ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC018757.6| Homo sapiens chromosome 5 clone CTB-45J8, complet... 42 1.8
2gb|AC008625.5|AC008625 Homo sapiens chromosome 5 clone CTB-157D1... 42 1.8
3gb|AC008675.5|AC008675 Homo sapiens chromosome 5 clone CTB-45I8,... 42 1.8
4gb|AC148186.3| Saimiri boliviensis boliviensis clone CH254-359M1... 42 1.8
5ref|XM_659593.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.0
6gb|AC125039.4| Mus musculus BAC clone RP23-335C3 from chromosome... 40 7.0
7emb|AL732479.6| Human DNA sequence from clone RP11-351D13 on chr... 40 7.0
8emb|AJ296143.1|FRU296143 Fugu rubripes vipr1B gene for vasoactiv... 40 7.0
9emb|BX324123.4| Zebrafish DNA sequence from clone DKEY-106L3 in ... 40 7.0
10gb|AC068629.35| Homo sapiens 12 BAC RP11-162A11 (Roswell Park Ca... 40 7.0
11emb|AJ630611.1| Homo sapiens t(8;14)(q24;q32) translocation brea... 40 7.0
12gb|AC107317.3| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 7.0
13gb|AC114488.3| Homo sapiens chromosome 1 clone RP11-73M7, comple... 40 7.0
14emb|AL355052.3|CNS05TC4 Human chromosome 14 DNA sequence BAC R-1... 40 7.0
15emb|AL122127.6|CNS01DT2 Human chromosome 14 DNA sequence BAC R-4... 40 7.0
16dbj|AP001077.6| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.0
17dbj|AP005482.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.0
18ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) ... 40 7.0
19gb|AC152000.3| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 7.0
20gb|U39737.1|HSU39737 Human Ig gamma-1 heavy chain switch region 40 7.0

>gb|AC018757.6| Homo sapiens chromosome 5 clone CTB-45J8, complete sequence
          Length = 186418

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 299    ggagtgaagcagcttcatctg 319
              |||||||||||||||||||||
Sbjct: 174578 ggagtgaagcagcttcatctg 174598



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>gb|AC008625.5|AC008625 Homo sapiens chromosome 5 clone CTB-157D17, complete sequence
          Length = 137592

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 299   ggagtgaagcagcttcatctg 319
             |||||||||||||||||||||
Sbjct: 58716 ggagtgaagcagcttcatctg 58696



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>gb|AC008675.5|AC008675 Homo sapiens chromosome 5 clone CTB-45I8, complete sequence
          Length = 186415

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 299   ggagtgaagcagcttcatctg 319
             |||||||||||||||||||||
Sbjct: 11841 ggagtgaagcagcttcatctg 11821



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>gb|AC148186.3| Saimiri boliviensis boliviensis clone CH254-359M10, complete sequence
          Length = 189199

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 455   gggaagcaggaggagcaagtc 475
             |||||||||||||||||||||
Sbjct: 59354 gggaagcaggaggagcaagtc 59374



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>ref|XM_659593.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7081.2), mRNA
          Length = 1725

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 421 cactctgcctgcagatgttc 440
           ||||||||||||||||||||
Sbjct: 254 cactctgcctgcagatgttc 235



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>gb|AC125039.4| Mus musculus BAC clone RP23-335C3 from chromosome 6, complete sequence
          Length = 222535

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   gcagaagcaggaagttcagg 284
             ||||||||||||||||||||
Sbjct: 77590 gcagaagcaggaagttcagg 77609



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>emb|AL732479.6| Human DNA sequence from clone RP11-351D13 on chromosome 10, complete
             sequence
          Length = 97781

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   gtggagctggaggaagagac 204
             ||||||||||||||||||||
Sbjct: 80587 gtggagctggaggaagagac 80568



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>emb|AJ296143.1|FRU296143 Fugu rubripes vipr1B gene for vasoactive intestinal peptide receptor,
            exons 1-12
          Length = 9516

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  tgatctgggtgctgaagttg 236
            ||||||||||||||||||||
Sbjct: 9370 tgatctgggtgctgaagttg 9351



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>emb|BX324123.4| Zebrafish DNA sequence from clone DKEY-106L3 in linkage group 10,
             complete sequence
          Length = 158061

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   tgcagaagttactgatgcag 356
             ||||||||||||||||||||
Sbjct: 38183 tgcagaagttactgatgcag 38164



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>gb|AC068629.35| Homo sapiens 12 BAC RP11-162A11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 191117

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   gagctggaggaagagacaag 207
             ||||||||||||||||||||
Sbjct: 45581 gagctggaggaagagacaag 45600



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>emb|AJ630611.1| Homo sapiens t(8;14)(q24;q32) translocation breakpoint in Burkitt's
           lymphoma, c-myc gene position 2334
          Length = 250

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 454 tgggaagcaggaggagcaag 473
           ||||||||||||||||||||
Sbjct: 81  tgggaagcaggaggagcaag 100



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>gb|AC107317.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-340A17, complete
              sequence
          Length = 228371

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    gtggagctggaggaagagac 204
              ||||||||||||||||||||
Sbjct: 144780 gtggagctggaggaagagac 144761



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>gb|AC114488.3| Homo sapiens chromosome 1 clone RP11-73M7, complete sequence
          Length = 184854

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   gagctggaggaagagacaag 207
             ||||||||||||||||||||
Sbjct: 73592 gagctggaggaagagacaag 73611



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>emb|AL355052.3|CNS05TC4 Human chromosome 14 DNA sequence BAC R-1070A8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 179712

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 228   ctgaagttgccccgagtgaagtccctgt 255
             |||||||||||| ||||||| |||||||
Sbjct: 83853 ctgaagttgcccagagtgaattccctgt 83880



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>emb|AL122127.6|CNS01DT2 Human chromosome 14 DNA sequence BAC R-417P24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169802

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   tgggaagcaggaggagcaag 473
             ||||||||||||||||||||
Sbjct: 15619 tgggaagcaggaggagcaag 15600



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>dbj|AP001077.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-767P20, complete
             sequence
          Length = 199652

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   tggagctggaggaagagaca 205
             ||||||||||||||||||||
Sbjct: 98900 tggagctggaggaagagaca 98881



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>dbj|AP005482.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-973H7, complete
              sequence
          Length = 170560

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    tggagctggaggaagagaca 205
              ||||||||||||||||||||
Sbjct: 148378 tggagctggaggaagagaca 148359



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>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14
          Length = 1279711

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 454     tgggaagcaggaggagcaag 473
               ||||||||||||||||||||
Sbjct: 1077619 tgggaagcaggaggagcaag 1077638



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>gb|AC152000.3| Ornithorhynchus anatinus chromosome UNK clone OABb-501A1, complete
              sequence
          Length = 149165

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    gcagaagcaggaagttcagg 284
              ||||||||||||||||||||
Sbjct: 107955 gcagaagcaggaagttcagg 107936



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>gb|U39737.1|HSU39737 Human Ig gamma-1 heavy chain switch region
          Length = 4171

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 454  tgggaagcaggaggagcaag 473
            ||||||||||||||||||||
Sbjct: 1633 tgggaagcaggaggagcaag 1652


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,968,135
Number of Sequences: 3902068
Number of extensions: 3968135
Number of successful extensions: 82462
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82403
Number of HSP's gapped (non-prelim): 59
length of query: 515
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 492
effective length of database: 17,143,297,704
effective search space: 8434502470368
effective search space used: 8434502470368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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