ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12l24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein 434 e-118
2gb|AC009476.3| Homo sapiens BAC clone RP11-207O14 from 2, comple... 46 0.12
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.9
4gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genom... 42 1.9
5gb|AC099041.7| Oryza sativa chromosome 3 BAC OSJNBa0036E17 genom... 42 1.9
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
7gb|AC079258.4| Homo sapiens BAC clone RP11-410J22 from 2, comple... 42 1.9
8dbj|AK067421.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
9ref|XM_480836.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.7
10ref|XM_477162.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.7
11gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 40 7.7
12gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
13gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic m... 40 7.7
14gb|AC121541.31| Mus musculus chromosome 5, clone RP24-132B11, co... 40 7.7
15gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complet... 40 7.7
16dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
18dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
20dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
21gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, compl... 40 7.7
22gb|AC084675.1|CBRG47J11 Caenorhabditis briggsae cosmid G47J11, c... 40 7.7
23dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
24dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
25dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.7
26dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
27dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
28dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
29dbj|AK121291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
30dbj|AK120342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
31dbj|AK101346.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
32dbj|AK067554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
33dbj|AK065336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
34emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, compl... 40 7.7

>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein
          Length = 1334

 Score =  434 bits (219), Expect = e-118
 Identities = 408/471 (86%)
 Strand = Plus / Plus

                                                                       
Query: 95  agttgagttaagtccagggcagctgcataagctagccgagctgatccatcgacaagaagt 154
           |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 89  agttgatttaagtccagggcagttgcataagctagccgatctgatccatcgacaagaagt 148

                                                                       
Query: 155 gcagaagcttcaagagctcaagttcgagtcatacgcagagcaacaaaactatctcaaaga 214
            |||||||||||||||||| ||||| | || || |||||||||||||| ||||||   ||
Sbjct: 149 ccagaagcttcaagagctcgagttcaactcgtatgcagagcaacaaaagtatctccgtga 208

                                                                       
Query: 215 cgccagagaggcccgtgataaggtgtaccatatccttgacagtgcacaggagatggttac 274
           |||||  || ||||| ||||||||||| || |||||||||||||||| ||| ||| |  |
Sbjct: 209 cgccaatgatgcccgcgataaggtgtatcacatccttgacagtgcacgggacatgatagc 268

                                                                       
Query: 275 ggaggccgaggccgacaatgacgccaccaagcaagagattgctaaggatgtctatgagta 334
             |  ||||||| || || || |||||||||||||| ||||  |||||||||||||| ||
Sbjct: 269 acaaaccgaggctgagaaggatgccaccaagcaagatattggcaaggatgtctatgacta 328

                                                                       
Query: 335 ctgcaccaaggccatcggaacatccctcaaattcatccgtagttacaacacccgtctcac 394
           |||||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 329 ctgcaccaaggccatcggaatatctctccaattcatccggagttacaacacccgtctcac 388

                                                                       
Query: 395 ctatcttgacaagctcaagacccatagtgatgatctcatcaagcagctaaagtggcttga 454
           ||| |||||||||||||||||||| ||||||||||||||||||||||||||||  ||  |
Sbjct: 389 ctaccttgacaagctcaagacccacagtgatgatctcatcaagcagctaaagttcctcaa 448

                                                                       
Query: 455 tccggtcacccaacagaaggaagctcagcgccttgctcttgaggcgggcatgtacaagaa 514
           ||  | ||||||||||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 449 tctagccacccaacagaaggaggcccagcgccttgcccttgaggctggcatgtataagaa 508

                                                              
Query: 515 agccgcgcttgaaaatgctgaaaagtttcaacattttataccaaaccaatt 565
           |||| |||| || |||||  ||||||||||||| |||  |||||| |||||
Sbjct: 509 agccacgctggagaatgccaaaaagtttcaacactttgcaccaaatcaatt 559



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>gb|AC009476.3| Homo sapiens BAC clone RP11-207O14 from 2, complete sequence
          Length = 184406

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 526   aaaatgctgaaaagtttcaacatttta 552
             ||||||||||||||||| |||||||||
Sbjct: 25044 aaaatgctgaaaagttttaacatttta 25018



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 33       tggccgccgtcgtcgccgtgg 53
                |||||||||||||||||||||
Sbjct: 18014769 tggccgccgtcgtcgccgtgg 18014749



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>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete
              sequence
          Length = 131589

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     tggccgccgtcgtcgccgtgg 53
              |||||||||||||||||||||
Sbjct: 101432 tggccgccgtcgtcgccgtgg 101452



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>gb|AC099041.7| Oryza sativa chromosome 3 BAC OSJNBa0036E17 genomic sequence,
            complete sequence
          Length = 142896

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 33   tggccgccgtcgtcgccgtgg 53
            |||||||||||||||||||||
Sbjct: 7523 tggccgccgtcgtcgccgtgg 7543



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 33       tggccgccgtcgtcgccgtgg 53
                |||||||||||||||||||||
Sbjct: 18008310 tggccgccgtcgtcgccgtgg 18008290



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>gb|AC079258.4| Homo sapiens BAC clone RP11-410J22 from 2, complete sequence
          Length = 169408

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 543    caacattttataccaaaccaa 563
              |||||||||||||||||||||
Sbjct: 144083 caacattttataccaaaccaa 144063



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>dbj|AK067421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106J20, full
           insert sequence
          Length = 1309

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 33  tggccgccgtcgtcgccgtgg 53
           |||||||||||||||||||||
Sbjct: 420 tggccgccgtcgtcgccgtgg 440



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>ref|XM_480836.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1308

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  ggccgccgtcgtcgccgtgg 53
           ||||||||||||||||||||
Sbjct: 421 ggccgccgtcgtcgccgtgg 440



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>ref|XM_477162.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 558

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  ggccgccgtcgtcgccgtgg 53
           ||||||||||||||||||||
Sbjct: 483 ggccgccgtcgtcgccgtgg 464



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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   ccatggccgccgtcgtcgcc 49
            ||||||||||||||||||||
Sbjct: 6915 ccatggccgccgtcgtcgcc 6896



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>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12,
             complete sequence
          Length = 187523

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    ccatggccgccgtcgtcgccgtgg 53
             |||||||||||| |||||||||||
Sbjct: 68788 ccatggccgccggcgtcgccgtgg 68811



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>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis
             gene cluster, partial sequence
          Length = 103450

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    tggccgccgtcgtcgccgtg 52
             ||||||||||||||||||||
Sbjct: 29796 tggccgccgtcgtcgccgtg 29777



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>gb|AC121541.31| Mus musculus chromosome 5, clone RP24-132B11, complete sequence
          Length = 171770

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  aacatccctcaaattcatcc 372
            ||||||||||||||||||||
Sbjct: 5340 aacatccctcaaattcatcc 5321



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>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence
          Length = 121737

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 533   tgaaaagtttcaacatttta 552
             ||||||||||||||||||||
Sbjct: 35533 tgaaaagtttcaacatttta 35552



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 34      ggccgccgtcgtcgccgtgg 53
               ||||||||||||||||||||
Sbjct: 8099020 ggccgccgtcgtcgccgtgg 8099039



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 34      ggccgccgtcgtcgccgtgg 53
               ||||||||||||||||||||
Sbjct: 7203491 ggccgccgtcgtcgccgtgg 7203472



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 30      ccatggccgccgtcgtcgccgtgg 53
               |||||||||||| |||||||||||
Sbjct: 4974203 ccatggccgccggcgtcgccgtgg 4974226



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 123      aagctagccgagctgatcca 142
                ||||||||||||||||||||
Sbjct: 28285604 aagctagccgagctgatcca 28285623



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 34       ggccgccgtcgtcgccgtgg 53
                ||||||||||||||||||||
Sbjct: 37007576 ggccgccgtcgtcgccgtgg 37007557



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>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence
          Length = 156582

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 533   tgaaaagtttcaacatttta 552
             ||||||||||||||||||||
Sbjct: 99813 tgaaaagtttcaacatttta 99794



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>gb|AC084675.1|CBRG47J11 Caenorhabditis briggsae cosmid G47J11, complete sequence
          Length = 43967

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 532  ctgaaaagtttcaacatttt 551
            ||||||||||||||||||||
Sbjct: 9689 ctgaaaagtttcaacatttt 9708



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>dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1402_H07
          Length = 140620

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    ggccgccgtcgtcgccgtgg 53
             ||||||||||||||||||||
Sbjct: 97880 ggccgccgtcgtcgccgtgg 97861



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>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0683F02
          Length = 153388

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   ggccgccgtcgtcgccgtgg 53
            ||||||||||||||||||||
Sbjct: 8717 ggccgccgtcgtcgccgtgg 8698



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 33      tggccgccgtcgtcgccgtg 52
               ||||||||||||||||||||
Sbjct: 1478132 tggccgccgtcgtcgccgtg 1478151



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>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0016A21
          Length = 144076

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    ggccgccgtcgtcgccgtgg 53
             ||||||||||||||||||||
Sbjct: 43975 ggccgccgtcgtcgccgtgg 43956



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>dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1047A05
          Length = 157517

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    ggccgccgtcgtcgccgtgg 53
             ||||||||||||||||||||
Sbjct: 67331 ggccgccgtcgtcgccgtgg 67350



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>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1743_B12
          Length = 175645

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   aagctagccgagctgatcca 142
             ||||||||||||||||||||
Sbjct: 77361 aagctagccgagctgatcca 77380



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>dbj|AK121291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109F03,
          full insert sequence
          Length = 2972

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 34 ggccgccgtcgtcgccgtgg 53
          ||||||||||||||||||||
Sbjct: 41 ggccgccgtcgtcgccgtgg 60



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>dbj|AK120342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061K19, full
           insert sequence
          Length = 2496

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  ggccgccgtcgtcgccgtgg 53
           ||||||||||||||||||||
Sbjct: 397 ggccgccgtcgtcgccgtgg 416



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>dbj|AK101346.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034K22,
          full insert sequence
          Length = 2131

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 34 ggccgccgtcgtcgccgtgg 53
          ||||||||||||||||||||
Sbjct: 59 ggccgccgtcgtcgccgtgg 78



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>dbj|AK067554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108L07,
          full insert sequence
          Length = 1178

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 34 ggccgccgtcgtcgccgtgg 53
          ||||||||||||||||||||
Sbjct: 59 ggccgccgtcgtcgccgtgg 78



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>dbj|AK065336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O22, full
           insert sequence
          Length = 2140

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 123 aagctagccgagctgatcca 142
           ||||||||||||||||||||
Sbjct: 532 aagctagccgagctgatcca 551



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>emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, complete sequence
          Length = 322774

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 524    tgaaaatgctgaaaagtttcaacatttt 551
              ||||||||||||||| ||||||||||||
Sbjct: 220711 tgaaaatgctgaaaa-tttcaacatttt 220685


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,752,330
Number of Sequences: 3902068
Number of extensions: 4752330
Number of successful extensions: 101459
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 100896
Number of HSP's gapped (non-prelim): 563
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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