| Clone Name | bags12l24 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein Length = 1334 Score = 434 bits (219), Expect = e-118 Identities = 408/471 (86%) Strand = Plus / Plus Query: 95 agttgagttaagtccagggcagctgcataagctagccgagctgatccatcgacaagaagt 154 |||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 89 agttgatttaagtccagggcagttgcataagctagccgatctgatccatcgacaagaagt 148 Query: 155 gcagaagcttcaagagctcaagttcgagtcatacgcagagcaacaaaactatctcaaaga 214 |||||||||||||||||| ||||| | || || |||||||||||||| |||||| || Sbjct: 149 ccagaagcttcaagagctcgagttcaactcgtatgcagagcaacaaaagtatctccgtga 208 Query: 215 cgccagagaggcccgtgataaggtgtaccatatccttgacagtgcacaggagatggttac 274 ||||| || ||||| ||||||||||| || |||||||||||||||| ||| ||| | | Sbjct: 209 cgccaatgatgcccgcgataaggtgtatcacatccttgacagtgcacgggacatgatagc 268 Query: 275 ggaggccgaggccgacaatgacgccaccaagcaagagattgctaaggatgtctatgagta 334 | ||||||| || || || |||||||||||||| |||| |||||||||||||| || Sbjct: 269 acaaaccgaggctgagaaggatgccaccaagcaagatattggcaaggatgtctatgacta 328 Query: 335 ctgcaccaaggccatcggaacatccctcaaattcatccgtagttacaacacccgtctcac 394 |||||||||||||||||||| ||| ||| |||||||||| |||||||||||||||||||| Sbjct: 329 ctgcaccaaggccatcggaatatctctccaattcatccggagttacaacacccgtctcac 388 Query: 395 ctatcttgacaagctcaagacccatagtgatgatctcatcaagcagctaaagtggcttga 454 ||| |||||||||||||||||||| |||||||||||||||||||||||||||| || | Sbjct: 389 ctaccttgacaagctcaagacccacagtgatgatctcatcaagcagctaaagttcctcaa 448 Query: 455 tccggtcacccaacagaaggaagctcagcgccttgctcttgaggcgggcatgtacaagaa 514 || | ||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| Sbjct: 449 tctagccacccaacagaaggaggcccagcgccttgcccttgaggctggcatgtataagaa 508 Query: 515 agccgcgcttgaaaatgctgaaaagtttcaacattttataccaaaccaatt 565 |||| |||| || ||||| ||||||||||||| ||| |||||| ||||| Sbjct: 509 agccacgctggagaatgccaaaaagtttcaacactttgcaccaaatcaatt 559
>gb|AC009476.3| Homo sapiens BAC clone RP11-207O14 from 2, complete sequence Length = 184406 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 526 aaaatgctgaaaagtttcaacatttta 552 ||||||||||||||||| ||||||||| Sbjct: 25044 aaaatgctgaaaagttttaacatttta 25018
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 tggccgccgtcgtcgccgtgg 53 ||||||||||||||||||||| Sbjct: 18014769 tggccgccgtcgtcgccgtgg 18014749
>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete sequence Length = 131589 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tggccgccgtcgtcgccgtgg 53 ||||||||||||||||||||| Sbjct: 101432 tggccgccgtcgtcgccgtgg 101452
>gb|AC099041.7| Oryza sativa chromosome 3 BAC OSJNBa0036E17 genomic sequence, complete sequence Length = 142896 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tggccgccgtcgtcgccgtgg 53 ||||||||||||||||||||| Sbjct: 7523 tggccgccgtcgtcgccgtgg 7543
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 tggccgccgtcgtcgccgtgg 53 ||||||||||||||||||||| Sbjct: 18008310 tggccgccgtcgtcgccgtgg 18008290
>gb|AC079258.4| Homo sapiens BAC clone RP11-410J22 from 2, complete sequence Length = 169408 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 543 caacattttataccaaaccaa 563 ||||||||||||||||||||| Sbjct: 144083 caacattttataccaaaccaa 144063
>dbj|AK067421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106J20, full insert sequence Length = 1309 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tggccgccgtcgtcgccgtgg 53 ||||||||||||||||||||| Sbjct: 420 tggccgccgtcgtcgccgtgg 440
>ref|XM_480836.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1308 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 421 ggccgccgtcgtcgccgtgg 440
>ref|XM_477162.1| Oryza sativa (japonica cultivar-group), mRNA Length = 558 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 483 ggccgccgtcgtcgccgtgg 464
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ccatggccgccgtcgtcgcc 49 |||||||||||||||||||| Sbjct: 6915 ccatggccgccgtcgtcgcc 6896
>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12, complete sequence Length = 187523 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 ccatggccgccgtcgtcgccgtgg 53 |||||||||||| ||||||||||| Sbjct: 68788 ccatggccgccggcgtcgccgtgg 68811
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tggccgccgtcgtcgccgtg 52 |||||||||||||||||||| Sbjct: 29796 tggccgccgtcgtcgccgtg 29777
>gb|AC121541.31| Mus musculus chromosome 5, clone RP24-132B11, complete sequence Length = 171770 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 aacatccctcaaattcatcc 372 |||||||||||||||||||| Sbjct: 5340 aacatccctcaaattcatcc 5321
>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence Length = 121737 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 tgaaaagtttcaacatttta 552 |||||||||||||||||||| Sbjct: 35533 tgaaaagtttcaacatttta 35552
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 8099020 ggccgccgtcgtcgccgtgg 8099039
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 7203491 ggccgccgtcgtcgccgtgg 7203472
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 ccatggccgccgtcgtcgccgtgg 53 |||||||||||| ||||||||||| Sbjct: 4974203 ccatggccgccggcgtcgccgtgg 4974226
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aagctagccgagctgatcca 142 |||||||||||||||||||| Sbjct: 28285604 aagctagccgagctgatcca 28285623
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 37007576 ggccgccgtcgtcgccgtgg 37007557
>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence Length = 156582 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 tgaaaagtttcaacatttta 552 |||||||||||||||||||| Sbjct: 99813 tgaaaagtttcaacatttta 99794
>gb|AC084675.1|CBRG47J11 Caenorhabditis briggsae cosmid G47J11, complete sequence Length = 43967 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 ctgaaaagtttcaacatttt 551 |||||||||||||||||||| Sbjct: 9689 ctgaaaagtttcaacatttt 9708
>dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1402_H07 Length = 140620 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 97880 ggccgccgtcgtcgccgtgg 97861
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 8717 ggccgccgtcgtcgccgtgg 8698
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 tggccgccgtcgtcgccgtg 52 |||||||||||||||||||| Sbjct: 1478132 tggccgccgtcgtcgccgtg 1478151
>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21 Length = 144076 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 43975 ggccgccgtcgtcgccgtgg 43956
>dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1047A05 Length = 157517 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 67331 ggccgccgtcgtcgccgtgg 67350
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1743_B12 Length = 175645 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aagctagccgagctgatcca 142 |||||||||||||||||||| Sbjct: 77361 aagctagccgagctgatcca 77380
>dbj|AK121291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109F03, full insert sequence Length = 2972 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 41 ggccgccgtcgtcgccgtgg 60
>dbj|AK120342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061K19, full insert sequence Length = 2496 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 397 ggccgccgtcgtcgccgtgg 416
>dbj|AK101346.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034K22, full insert sequence Length = 2131 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 59 ggccgccgtcgtcgccgtgg 78
>dbj|AK067554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108L07, full insert sequence Length = 1178 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ggccgccgtcgtcgccgtgg 53 |||||||||||||||||||| Sbjct: 59 ggccgccgtcgtcgccgtgg 78
>dbj|AK065336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O22, full insert sequence Length = 2140 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aagctagccgagctgatcca 142 |||||||||||||||||||| Sbjct: 532 aagctagccgagctgatcca 551
>emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, complete sequence Length = 322774 Score = 40.1 bits (20), Expect = 7.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 524 tgaaaatgctgaaaagtttcaacatttt 551 ||||||||||||||| |||||||||||| Sbjct: 220711 tgaaaatgctgaaaa-tttcaacatttt 220685 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,752,330 Number of Sequences: 3902068 Number of extensions: 4752330 Number of successful extensions: 101459 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 100896 Number of HSP's gapped (non-prelim): 563 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)