ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags13a16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473874.1| Oryza sativa (japonica cultivar-group), predic... 78 4e-11
2emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 78 4e-11
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
4dbj|AK072038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
5dbj|AK070022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
6dbj|AK060828.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
7gb|AC027489.8| Homo sapiens chromosome , clone RP11-453M23, comp... 44 0.54
8gb|AC091108.5| Homo sapiens chromosome 18, clone RP11-765H19, co... 44 0.54
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
10dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.1
12gb|AC122235.5| Mus musculus BAC clone RP23-139H6 from chromosome... 42 2.1
13gb|AC124763.4| Mus musculus BAC clone RP23-158P17 from 12, compl... 42 2.1
14emb|AL133457.8| Human DNA sequence from clone RP1-149C7 on chrom... 42 2.1
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genom... 42 2.1
17gb|AC149875.2| Xenopus tropicalis clone CH216-151P11, complete s... 42 2.1
18gb|AY579780.1| Avian pneumovirus from USA, complete genome 40 8.5
19gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete... 40 8.5
20gb|AC111620.5| Rattus norvegicus 2 BAC CH230-123K4 (Children's H... 40 8.5
21gb|AC144714.4| Mus musculus BAC clone RP24-371M20 from chromosom... 40 8.5
22gb|AC165142.3| Mus musculus BAC clone RP24-484I1 from chromosome... 40 8.5
23gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
24gb|AC116690.15| Mus musculus chromosome 8, clone RP24-279I6, com... 40 8.5
25ref|XM_808720.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.5
26ref|XM_815199.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.5
27emb|CR956381.6| Pig DNA sequence from clone CH242-248C21 on chro... 40 8.5
28gb|AC158218.4| Mus musculus chromosome 8, clone RP23-196J23, com... 40 8.5
29emb|AL022327.17|HS355C18 Human DNA sequence from clone RP3-355C1... 40 8.5
30gb|AC079313.35| Homo sapiens 12q BAC RP11-753H16 (Roswell Park C... 40 8.5
31gb|AC162900.3| Mus musculus BAC clone RP23-416N10 from chromosom... 40 8.5
32gb|AC149383.2| Phakopsora pachyrhizi clone JGIAFNA-5A9, complete... 40 8.5
33gb|AC099565.2| Homo sapiens chromosome 1 clone RP4-651I17, compl... 40 8.5
34gb|AC096773.3| Homo sapiens BAC clone RP11-810P8 from 4, complet... 40 8.5
35gb|AC093566.3| Homo sapiens chromosome 8, clone CTD-2017M22, com... 40 8.5
36gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 8.5
37ref|XM_702261.1| PREDICTED: Danio rerio similar to dishevelled-a... 40 8.5
38ref|XM_679028.1| PREDICTED: Danio rerio similar to dishevelled-a... 40 8.5
39gb|AC159710.9| Mus musculus 10 BAC RP24-325N16 (Roswell Park Can... 40 8.5
40gb|AC025570.43| Homo sapiens 12 BAC RP11-681G7 (Roswell Park Can... 40 8.5
41gb|AC099476.6| Rattus norvegicus BAC CH230-159G8 (Children's Ho... 40 8.5
42dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
43gb|AC010920.11|AC010920 Drosophila melanogaster, chromosome X, r... 40 8.5
44gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, comp... 40 8.5
45gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, r... 40 8.5
46gb|AY590688.1| Avian pneumovirus strain Colorado, complete genome 40 8.5
47gb|AC137627.10| Homo sapiens 12 BAC RP11-592H6 (Roswell Park Can... 40 8.5
48gb|AC007539.8| Homo sapiens 12 BAC RCPI11-935C2 (Roswell Park Ca... 40 8.5
49gb|AC108667.9| Homo sapiens 3 BAC RP11-816B4 (Roswell Park Cance... 40 8.5
50ref|XM_576875.1| PREDICTED: Rattus norvegicus similar to RIKEN c... 40 8.5
51gb|AC112235.4| Homo sapiens BAC clone RP11-285D1 from 2, complet... 40 8.5
52ref|XM_573421.1| PREDICTED: Rattus norvegicus similar to LRRGT00... 40 8.5
53ref|XM_575955.1| PREDICTED: Rattus norvegicus similar to LRRGT00... 40 8.5
54ref|XM_342261.2| PREDICTED: Rattus norvegicus similar to LRRGT00... 40 8.5
55ref|XM_575399.1| PREDICTED: Rattus norvegicus similar to LRRGT00... 40 8.5
56ref|XM_574687.1| PREDICTED: Rattus norvegicus similar to ORF1 (L... 40 8.5
57tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete int... 40 8.5
58gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71... 40 8.5
59gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 ... 40 8.5
60gb|AF057301.1|AF057301 Mus musculus keratocan (Ktcn) gene, compl... 40 8.5
61gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
62gb|AC132376.4| Mus musculus BAC clone RP24-80J23 from 1, complet... 40 8.5
63emb|Z74474.1|CEK10C8 Caenorhabditis elegans Cosmid K10C8, comple... 40 8.5
64gb|DQ009484.1| Avian metapneumovirus, complete genome 40 8.5
65emb|AL732571.8| Mouse DNA sequence from clone RP23-23D11 on chro... 40 8.5 
>ref|XM_473874.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1317

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                       
Query: 243 agcatgaatctgctgcaagagaagaagcaaatgtggatccgaaacccaagggaaagaagc 302
           ||||||||||| |  || |||||| ||||||| |||| |  || ||||||| |||||| |
Sbjct: 548 agcatgaatcttccacaggagaagtagcaaatatggagcataagcccaaggaaaagaaac 607

                                                                       
Query: 303 aaaaaactgaacctgtgaaacagattgctgcacctgttcgatcgtcacctcgtttaactg 362
           | |||||| ||||||| ||||||||  || ||||| ||||| |||||||||||||| |||
Sbjct: 608 agaaaactaaacctgtcaaacagatctctacacctcttcgagcgtcacctcgtttagctg 667

                  
Query: 363 cactgaa 369
           | |||||
Sbjct: 668 cgctgaa 674
to top
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 105/127 (82%)
 Strand = Plus / Minus

                                                                          
Query: 243    agcatgaatctgctgcaagagaagaagcaaatgtggatccgaaacccaagggaaagaagc 302
              ||||||||||| |  || |||||| ||||||| |||| |  || ||||||| |||||| |
Sbjct: 136518 agcatgaatcttccacaggagaagtagcaaatatggagcataagcccaaggaaaagaaac 136459

                                                                          
Query: 303    aaaaaactgaacctgtgaaacagattgctgcacctgttcgatcgtcacctcgtttaactg 362
              | |||||| ||||||| ||||||||  || ||||| ||||| |||||||||||||| |||
Sbjct: 136458 agaaaactaaacctgtcaaacagatctctacacctcttcgagcgtcacctcgtttagctg 136399

                     
Query: 363    cactgaa 369
              | |||||
Sbjct: 136398 cgctgaa 136392
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 105/127 (82%)
 Strand = Plus / Minus

                                                                            
Query: 243      agcatgaatctgctgcaagagaagaagcaaatgtggatccgaaacccaagggaaagaagc 302
                ||||||||||| |  || |||||| ||||||| |||| |  || ||||||| |||||| |
Sbjct: 31154437 agcatgaatcttccacaggagaagtagcaaatatggagcataagcccaaggaaaagaaac 31154378

                                                                            
Query: 303      aaaaaactgaacctgtgaaacagattgctgcacctgttcgatcgtcacctcgtttaactg 362
                | |||||| ||||||| ||||||||  || ||||| ||||| |||||||||||||| |||
Sbjct: 31154377 agaaaactaaacctgtcaaacagatctctacacctcttcgagcgtcacctcgtttagctg 31154318

                       
Query: 363      cactgaa 369
                | |||||
Sbjct: 31154317 cgctgaa 31154311
to top
>dbj|AK072038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M16, full
           insert sequence
          Length = 1900

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                       
Query: 243 agcatgaatctgctgcaagagaagaagcaaatgtggatccgaaacccaagggaaagaagc 302
           ||||||||||| |  || |||||| ||||||| |||| |  || ||||||| |||||| |
Sbjct: 850 agcatgaatcttccacaggagaagtagcaaatatggagcataagcccaaggaaaagaaac 909

                                                                       
Query: 303 aaaaaactgaacctgtgaaacagattgctgcacctgttcgatcgtcacctcgtttaactg 362
           | |||||| ||||||| ||||||||  || ||||| ||||| |||||||||||||| |||
Sbjct: 910 agaaaactaaacctgtcaaacagatctctacacctcttcgagcgtcacctcgtttagctg 969

                  
Query: 363 cactgaa 369
           | |||||
Sbjct: 970 cgctgaa 976
to top
>dbj|AK070022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036C24, full
            insert sequence
          Length = 3235

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                        
Query: 243  agcatgaatctgctgcaagagaagaagcaaatgtggatccgaaacccaagggaaagaagc 302
            ||||||||||| |  || |||||| ||||||| |||| |  || ||||||| |||||| |
Sbjct: 2145 agcatgaatcttccacaggagaagtagcaaatatggagcataagcccaaggaaaagaaac 2204

                                                                        
Query: 303  aaaaaactgaacctgtgaaacagattgctgcacctgttcgatcgtcacctcgtttaactg 362
            | |||||| ||||||| ||||||||  || ||||| ||||| |||||||||||||| |||
Sbjct: 2205 agaaaactaaacctgtcaaacagatctctacacctcttcgagcgtcacctcgtttagctg 2264

                   
Query: 363  cactgaa 369
            | |||||
Sbjct: 2265 cgctgaa 2271
to top
>dbj|AK060828.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C01, full
           insert sequence
          Length = 1535

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 105/127 (82%)
 Strand = Plus / Plus

                                                                       
Query: 243 agcatgaatctgctgcaagagaagaagcaaatgtggatccgaaacccaagggaaagaagc 302
           ||||||||||| |  || |||||| ||||||| |||| |  || ||||||| |||||| |
Sbjct: 427 agcatgaatcttccacaggagaagtagcaaatatggagcataagcccaaggaaaagaaac 486

                                                                       
Query: 303 aaaaaactgaacctgtgaaacagattgctgcacctgttcgatcgtcacctcgtttaactg 362
           | |||||| ||||||| ||||||||  || ||||| ||||| |||||||||||||| |||
Sbjct: 487 agaaaactaaacctgtcaaacagatctctacacctcttcgagcgtcacctcgtttagctg 546

                  
Query: 363 cactgaa 369
           | |||||
Sbjct: 547 cgctgaa 553
to top
>gb|AC027489.8| Homo sapiens chromosome , clone RP11-453M23, complete sequence
          Length = 189706

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 46     aaacaagagaaaaaatgaggac 67
              ||||||||||||||||||||||
Sbjct: 163329 aaacaagagaaaaaatgaggac 163308
to top
>gb|AC091108.5| Homo sapiens chromosome 18, clone RP11-765H19, complete sequence
          Length = 164790

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 46    aaacaagagaaaaaatgaggac 67
             ||||||||||||||||||||||
Sbjct: 88465 aaacaagagaaaaaatgaggac 88486
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 41      actccaaacaagagaaaaaatg 62
               ||||||||||||||||||||||
Sbjct: 5914589 actccaaacaagagaaaaaatg 5914568
to top
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0016I09
          Length = 148517

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 41     actccaaacaagagaaaaaatg 62
              ||||||||||||||||||||||
Sbjct: 118330 actccaaacaagagaaaaaatg 118309
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 303      aaaaaactgaacctgtgaaac 323
                |||||||||||||||||||||
Sbjct: 35453039 aaaaaactgaacctgtgaaac 35453059
to top
>gb|AC122235.5| Mus musculus BAC clone RP23-139H6 from chromosome 12, complete sequence
          Length = 190293

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 478    taaaaatcgtaagtcaaaggc 498
              |||||||||||||||||||||
Sbjct: 120175 taaaaatcgtaagtcaaaggc 120155
to top
>gb|AC124763.4| Mus musculus BAC clone RP23-158P17 from 12, complete sequence
          Length = 208489

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 478    taaaaatcgtaagtcaaaggc 498
              |||||||||||||||||||||
Sbjct: 207188 taaaaatcgtaagtcaaaggc 207208
to top
>emb|AL133457.8| Human DNA sequence from clone RP1-149C7 on chromosome 6q15-16.3
             Contains STSs and GSSs, complete sequence
          Length = 85467

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 304   aaaaactgaacctgtgaaaca 324
             |||||||||||||||||||||
Sbjct: 41376 aaaaactgaacctgtgaaaca 41396
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 303      aaaaaactgaacctgtgaaac 323
                |||||||||||||||||||||
Sbjct: 35543111 aaaaaactgaacctgtgaaac 35543131
to top
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete
             sequence
          Length = 133846

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   aaaaaactgaacctgtgaaac 323
             |||||||||||||||||||||
Sbjct: 34587 aaaaaactgaacctgtgaaac 34567
to top
>gb|AC149875.2| Xenopus tropicalis clone CH216-151P11, complete sequence
          Length = 155394

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   aaaatatgccatcatcagagc 170
             |||||||||||||||||||||
Sbjct: 37730 aaaatatgccatcatcagagc 37710
to top
>gb|AY579780.1| Avian pneumovirus from USA, complete genome
          Length = 13134

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 457  aattaaaaagatggagcaagttaaaaat 484
            ||||||||||| ||| ||||||||||||
Sbjct: 6911 aattaaaaagaaggaccaagttaaaaat 6938
to top
>gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete sequence
          Length = 179396

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   aaatcgtaagtcaaaggcaa 500
             ||||||||||||||||||||
Sbjct: 25503 aaatcgtaagtcaaaggcaa 25522
to top
>gb|AC111620.5| Rattus norvegicus 2 BAC CH230-123K4 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 59971

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   atgccatcatcagagcccaa 174
             ||||||||||||||||||||
Sbjct: 13747 atgccatcatcagagcccaa 13766
to top
>gb|AC144714.4| Mus musculus BAC clone RP24-371M20 from chromosome 8, complete sequence
          Length = 176994

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 547    tacttctggaaatgctgaagacaa 570
              ||||||||||| ||||||||||||
Sbjct: 151478 tacttctggaactgctgaagacaa 151455
to top
>gb|AC165142.3| Mus musculus BAC clone RP24-484I1 from chromosome 7, complete sequence
          Length = 165049

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   actgaaaaaggaccaggaag 383
             ||||||||||||||||||||
Sbjct: 66833 actgaaaaaggaccaggaag 66814
to top
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0029P13, complete sequence
          Length = 158506

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    cggcggatttcaggggaaaa 87
             ||||||||||||||||||||
Sbjct: 80131 cggcggatttcaggggaaaa 80112
to top
>gb|AC116690.15| Mus musculus chromosome 8, clone RP24-279I6, complete sequence
          Length = 171583

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 553    tggaaatgctgaagacaagt 572
              ||||||||||||||||||||
Sbjct: 139859 tggaaatgctgaagacaagt 139840
to top
>ref|XM_808720.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506445.20) partial mRNA
          Length = 3042

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 321  aacagattgctgcacctgtt 340
            ||||||||||||||||||||
Sbjct: 1629 aacagattgctgcacctgtt 1610
to top
>ref|XM_815199.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053508277.340) partial mRNA
          Length = 3054

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 321  aacagattgctgcacctgtt 340
            ||||||||||||||||||||
Sbjct: 1638 aacagattgctgcacctgtt 1619
to top
>emb|CR956381.6| Pig DNA sequence from clone CH242-248C21 on chromosome 17, complete
             sequence
          Length = 58781

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   ccaaagggaggctggcagag 202
             ||||||||||||||||||||
Sbjct: 55862 ccaaagggaggctggcagag 55843
to top
>gb|AC158218.4| Mus musculus chromosome 8, clone RP23-196J23, complete sequence
          Length = 239980

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 553   tggaaatgctgaagacaagt 572
             ||||||||||||||||||||
Sbjct: 92977 tggaaatgctgaagacaagt 92958
to top
>emb|AL022327.17|HS355C18 Human DNA sequence from clone RP3-355C18 on chromosome 22q13.3 Contains
              the KIAA0027 gene, ESTs, STSs, GSSs and seven putative CpG
              islands, complete sequence
          Length = 101270

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    gggaggctggcagagttgaa 207
              ||||||||||||||||||||
Sbjct: 100189 gggaggctggcagagttgaa 100208
to top
>gb|AC079313.35| Homo sapiens 12q BAC RP11-753H16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160232

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 550    ttctggaaatgctgaagaca 569
              ||||||||||||||||||||
Sbjct: 121566 ttctggaaatgctgaagaca 121585
to top
>gb|AC162900.3| Mus musculus BAC clone RP23-416N10 from chromosome 1, complete sequence
          Length = 186662

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 215    atggctagagagaatgatcagagg 238
              ||||||| ||||||||||||||||
Sbjct: 126246 atggctaaagagaatgatcagagg 126269
to top
>gb|AC149383.2| Phakopsora pachyrhizi clone JGIAFNA-5A9, complete sequence
          Length = 39440

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 445   accgacagagcaaattaaaa 464
             ||||||||||||||||||||
Sbjct: 32383 accgacagagcaaattaaaa 32364
to top
>gb|AC099565.2| Homo sapiens chromosome 1 clone RP4-651I17, complete sequence
          Length = 108078

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    aacaagagaaaaaatgagga 66
             ||||||||||||||||||||
Sbjct: 15545 aacaagagaaaaaatgagga 15526
to top
>gb|AC096773.3| Homo sapiens BAC clone RP11-810P8 from 4, complete sequence
          Length = 136403

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 508    tccagtaattcagaataaag 527
              ||||||||||||||||||||
Sbjct: 119138 tccagtaattcagaataaag 119119
to top
>gb|AC093566.3| Homo sapiens chromosome 8, clone CTD-2017M22, complete sequence
          Length = 177522

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    acaagagaaaaaatgaggac 67
             ||||||||||||||||||||
Sbjct: 32503 acaagagaaaaaatgaggac 32484
to top
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 67      ccggcggatttcaggggaaa 86
               ||||||||||||||||||||
Sbjct: 1249088 ccggcggatttcaggggaaa 1249069
to top
>ref|XM_702261.1| PREDICTED: Danio rerio similar to dishevelled-associated activator
           of morphogenesis 1, transcript variant 2 (LOC557451),
           mRNA
          Length = 3756

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 367 gaaaaaggaccaggaagagaataa 390
           ||||||||| ||||||||||||||
Sbjct: 267 gaaaaaggaacaggaagagaataa 290
to top
>ref|XM_679028.1| PREDICTED: Danio rerio similar to dishevelled-associated activator
           of morphogenesis 1, transcript variant 1 (LOC557451),
           mRNA
          Length = 3720

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 367 gaaaaaggaccaggaagagaataa 390
           ||||||||| ||||||||||||||
Sbjct: 267 gaaaaaggaacaggaagagaataa 290
to top
>gb|AC159710.9| Mus musculus 10 BAC RP24-325N16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 204302

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    atgagaattctgaaaatatg 157
              ||||||||||||||||||||
Sbjct: 146158 atgagaattctgaaaatatg 146139
to top
>gb|AC025570.43| Homo sapiens 12 BAC RP11-681G7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 64110

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   ttctggaaatgctgaagaca 569
             ||||||||||||||||||||
Sbjct: 23421 ttctggaaatgctgaagaca 23440
to top
>gb|AC099476.6| Rattus norvegicus  BAC CH230-159G8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 208229

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   atgccatcatcagagcccaa 174
             ||||||||||||||||||||
Sbjct: 77627 atgccatcatcagagcccaa 77608
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 68       cggcggatttcaggggaaaa 87
                ||||||||||||||||||||
Sbjct: 25353118 cggcggatttcaggggaaaa 25353099
to top
>gb|AC010920.11|AC010920 Drosophila melanogaster, chromosome X, region 14C-14D, BAC clone
              BACR47D09, complete sequence
          Length = 166935

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 481    aaatcgtaagtcaaaggcaa 500
              ||||||||||||||||||||
Sbjct: 157154 aaatcgtaagtcaaaggcaa 157173
to top
>gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, complete sequence
          Length = 192937

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   aaaactgaacctgtgaaaca 324
             ||||||||||||||||||||
Sbjct: 94659 aaaactgaacctgtgaaaca 94678
to top
>gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone
              BACR05I01, complete sequence
          Length = 187151

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     cggatttcaggggaaaaatc 90
              ||||||||||||||||||||
Sbjct: 141035 cggatttcaggggaaaaatc 141016
to top
>gb|AY590688.1| Avian pneumovirus strain Colorado, complete genome
          Length = 14150

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 457  aattaaaaagatggagcaagttaaaaat 484
            ||||||||||| ||| ||||||||||||
Sbjct: 7927 aattaaaaagaaggaccaagttaaaaat 7954
to top
>gb|AC137627.10| Homo sapiens 12 BAC RP11-592H6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155345

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   aaagatggagcaagttaaaa 482
             ||||||||||||||||||||
Sbjct: 10519 aaagatggagcaagttaaaa 10538
to top
>gb|AC007539.8| Homo sapiens 12 BAC RCPI11-935C2 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177147

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   aaagatggagcaagttaaaa 482
             ||||||||||||||||||||
Sbjct: 85923 aaagatggagcaagttaaaa 85942
to top
>gb|AC108667.9| Homo sapiens 3 BAC RP11-816B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 130669

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   aagagaagaagcaaatgtgg 278
             ||||||||||||||||||||
Sbjct: 92063 aagagaagaagcaaatgtgg 92044
to top
>ref|XM_576875.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2410116I05
           (LOC501464), mRNA
          Length = 1035

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 atgccatcatcagagcccaa 174
           ||||||||||||||||||||
Sbjct: 148 atgccatcatcagagcccaa 167
to top
>gb|AC112235.4| Homo sapiens BAC clone RP11-285D1 from 2, complete sequence
          Length = 30304

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 284   aaacccaagggaaagaagcaaaaa 307
             |||||||||||| |||||||||||
Sbjct: 15608 aaacccaagggacagaagcaaaaa 15585
to top
>ref|XM_573421.1| PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC498203),
           mRNA
          Length = 821

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 atgccatcatcagagcccaa 174
           ||||||||||||||||||||
Sbjct: 216 atgccatcatcagagcccaa 235
to top
>ref|XM_575955.1| PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500586),
           mRNA
          Length = 740

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 atgccatcatcagagcccaa 174
           ||||||||||||||||||||
Sbjct: 216 atgccatcatcagagcccaa 235
to top
>ref|XM_342261.2| PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC361962),
           mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 atgccatcatcagagcccaa 174
           ||||||||||||||||||||
Sbjct: 469 atgccatcatcagagcccaa 488
to top
>ref|XM_575399.1| PREDICTED: Rattus norvegicus similar to LRRGT00176 (LOC500043),
           mRNA
          Length = 1893

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 atgccatcatcagagcccaa 174
           ||||||||||||||||||||
Sbjct: 869 atgccatcatcagagcccaa 888
to top
>ref|XM_574687.1| PREDICTED: Rattus norvegicus similar to ORF1 (LOC499372), mRNA
          Length = 1079

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 atgccatcatcagagcccaa 174
           ||||||||||||||||||||
Sbjct: 54  atgccatcatcagagcccaa 73
to top
>tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete interleukin-1 gene cluster (Draft
             Contig) including IL1A (IL1F1), IL1B (IL1F2), IL1RN
             (IL1F3), IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1F10
          Length = 495475

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 284   aaacccaagggaaagaagcaaaaa 307
             |||||||||||| |||||||||||
Sbjct: 63624 aaacccaagggacagaagcaaaaa 63601
to top
>gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71 of 118 of the
             complete sequence
          Length = 235707

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    cggatttcaggggaaaaatc 90
             ||||||||||||||||||||
Sbjct: 64898 cggatttcaggggaaaaatc 64879
to top
>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete
              sequence
          Length = 304712

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 481    aaatcgtaagtcaaaggcaa 500
              ||||||||||||||||||||
Sbjct: 176436 aaatcgtaagtcaaaggcaa 176455
to top
>gb|AF057301.1|AF057301 Mus musculus keratocan (Ktcn) gene, complete cds
          Length = 6483

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  atgagaattctgaaaatatg 157
            ||||||||||||||||||||
Sbjct: 4182 atgagaattctgaaaatatg 4163
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 68       cggcggatttcaggggaaaa 87
                ||||||||||||||||||||
Sbjct: 25671788 cggcggatttcaggggaaaa 25671769
to top
>gb|AC132376.4| Mus musculus BAC clone RP24-80J23 from 1, complete sequence
          Length = 191858

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 215   atggctagagagaatgatcagagg 238
             ||||||| ||||||||||||||||
Sbjct: 27083 atggctaaagagaatgatcagagg 27106
to top
>emb|Z74474.1|CEK10C8 Caenorhabditis elegans Cosmid K10C8, complete sequence
          Length = 21077

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   tgagaattctgaaaatatgc 158
             ||||||||||||||||||||
Sbjct: 10850 tgagaattctgaaaatatgc 10869
to top
>gb|DQ009484.1| Avian metapneumovirus, complete genome
          Length = 14071

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 457  aattaaaaagatggagcaagttaaaaat 484
            ||||||||||| ||| ||||||||||||
Sbjct: 7887 aattaaaaagaaggaccaagttaaaaat 7914
to top
>emb|AL732571.8| Mouse DNA sequence from clone RP23-23D11 on chromosome 4, complete
            sequence
          Length = 214061

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  caagggaaagaagcaaaaaa 308
            ||||||||||||||||||||
Sbjct: 6729 caagggaaagaagcaaaaaa 6710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,884,977
Number of Sequences: 3902068
Number of extensions: 6884977
Number of successful extensions: 137349
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137084
Number of HSP's gapped (non-prelim): 265
length of query: 623
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 600
effective length of database: 17,143,297,704
effective search space: 10285978622400
effective search space used: 10285978622400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top