>SAM50_HUMAN (Q9Y512) Sorting and assembly machinery component 50 homolog|
          Length = 469

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
 Frame = +3

Query: 90  TMELSVGAII--PRIGPIPTPLMARVSFLSDDWLKSSLREHLMGVSVGL---LSTMNHNL 254
           T E S G     PR G         +  ++  +  SSLRE   G+S      +   +H +
Sbjct: 167 TKETSYGLSFFKPRPGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFPIWKTSHTV 226

Query: 255 AYNLSWRTIIDPARLSSSSIREQLEHSLLSSIKYTYKIDQRDSSMRPTRGYAFLSSSQVG 434
            +   WR +   +R +S ++R++  HSL SS+ +   ID R+SS+ P RG     + ++ 
Sbjct: 227 KWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELA 286

Query: 435 GLAPDSKSIRFVRQEFDLRV 494
           G       + F++++F+L++
Sbjct: 287 GYT--GGDVSFIKEDFELQL 304

>SAM50_SCHPO (Q10478) SAM50-like protein SpAC17C9.06|
          Length = 475

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 26/79 (32%), Positives = 38/79 (48%)
 Frame = +3

Query: 246 HNLAYNLSWRTIIDPARLSSSSIREQLEHSLLSSIKYTYKIDQRDSSMRPTRGYAFLSSS 425
           H L+ NL WR +      +S S+R +   SL  S+ YTY  D RD  M PT+G     + 
Sbjct: 232 HLLSQNLLWRQVTHLTEYASPSVRLEAGDSLKQSLSYTYTRDTRDHLMIPTKGDYVRQTL 291

Query: 426 QVGGLAPDSKSIRFVRQEF 482
           ++ G         F++ EF
Sbjct: 292 ELAGFGFLPGDASFLKSEF 310

>SAM50_CAEEL (P46576) SAM50-like protein gop-3 (Gro-1 operon protein 3)|
          Length = 434

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 27/87 (31%), Positives = 44/87 (50%)
 Frame = +3

Query: 246 HNLAYNLSWRTIIDPARLSSSSIREQLEHSLLSSIKYTYKIDQRDSSMRPTRGYAFLSSS 425
           H +  N  WRT+    R ++ S+REQ  H+L  S++    +D RD  +  +RG     + 
Sbjct: 202 HQVKLNAIWRTL-RATRDAAFSVREQAGHTLKFSLENAVAVDTRDRPILASRGILARFAQ 260

Query: 426 QVGGLAPDSKSIRFVRQEFDLRVAMPL 506
           +  G+  D+    FV+   DL+ A PL
Sbjct: 261 EYAGVFGDAS---FVKNTLDLQAAAPL 284

>RAD17_ARATH (Q9MBA3) Cell cycle checkpoint protein RAD17 (AtRAD17) (Radiation|
           sensitive 17)
          Length = 599

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = +3

Query: 177 DWLKSSLREHLMGVS--VGLLSTMNHNLAYNLSWRTIIDPARLSSSSIREQLEHSLLSSI 350
           D+LK+ LR +++ V+   G+  +   +L  ++   T+ +       +I ++  H+  S +
Sbjct: 124 DFLKNGLRNNVLLVTGQAGVGKSATIHLITSILGVTVHE-WNAPIPTIWQEHVHNTSSGL 182

Query: 351 KYTYKIDQRDSSMRPTRGYAFLSSSQVGGL 440
           KYT K+D+ ++ +  TR Y  ++SS   G+
Sbjct: 183 KYTSKLDEFENFVESTRKYGVMASSSTDGI 212

>GCN1L_HUMAN (Q92616) GCN1-like protein 1 (HsGCN1)|
          Length = 2670

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
 Frame = +3

Query: 162  SFLSDDWLKSSLREHLMGVSVGLLSTMNHNLAYNLSWRTIIDPARLSSSSIREQLEHSLL 341
            +FL+++ L + L++ L+    G+   + H  +  LS    + P RL +      ++  +L
Sbjct: 2454 AFLTEEELSAVLQQCLLADVSGIDWMVRHGRSLALSVAVNVAPGRLCAGRYSSDVQEMIL 2513

Query: 342  SSIKYTYKIDQRDSSMRPTRGYAFLSSSQV---GGLAPDSKSIRFVR----QEFDLRVAM 500
            SS       D+   ++   RG  FL    +   GG  P   S  FV+       D+R+  
Sbjct: 2514 SSA----TADRIPIAVSGVRGMGFLMRHHIETGGGQLPAKLSSLFVKCLQNPSSDIRLVA 2569

Query: 501  PLGVW 515
               +W
Sbjct: 2570 EKMIW 2574

>UL70_HCMVA (P17149) Probable primase (DNA replication protein UL70)|
          Length = 946

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +3

Query: 240 MNHNLAYNLSWRTIIDPARLSSSSIREQLEHSLLS-SIKYTYKIDQRDSSMRPTRGYAFL 416
           +NH +  +    T++DP     SS+   + H   S  + Y YK+DQ D       GY   
Sbjct: 664 LNHAVCLDAELHTLLDPISHPESSLDTGIYHHGRSVRLPYMYKMDQDD-------GYFMH 716

Query: 417 SSSQVGGLAPDS---KSIRFVRQEFDLR 491
                  + PD+     + FVR + DLR
Sbjct: 717 RRLLPLFIVPDAYREHPLGFVRAQLDLR 744

>AK1D1_MOUSE (Q8VCX1) 3-oxo-5-beta-steroid 4-dehydrogenase (EC 1.3.99.6)|
           (Delta(4)-3-ketosteroid 5-beta-reductase) (Aldo-keto
           reductase family 1 member D1)
          Length = 325

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 317 PYGTGGQPRWVNYSSP*EIVSKVMVHRGEQTNRNPHQV 204
           P GT   P WVN SSP  +  +++   G++ N+   Q+
Sbjct: 220 PLGTCRNPSWVNVSSPPLLNDELLTSLGKKYNKTQAQI 257

>DYHC_SCHPO (O13290) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4196

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/40 (27%), Positives = 27/40 (67%)
 Frame = -3

Query: 256 ARLWFIVESKPTETPIRCSLSEDFNQSSERNDTRAISGVG 137
           ++++++ +S+  E+P+R S+S DF+  S   + R ++ +G
Sbjct: 707 SKIFYLTQSESAESPLRLSVSIDFDPCSFCKEIRTLAHLG 746

>5HT6R_PANTR (Q5IS65) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin|
           receptor 6)
          Length = 440

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 63  ASGLLGLDQTMELSVGAIIPRIGPIPTPLMARVSFLSDDWLKSSLREHLMGV 218
           + G  GL  T +L +     R  P+PT   A V+F + D  +  LR H +G+
Sbjct: 386 SGGSSGLRLTAQLLLPGEATRDPPLPTRAAAAVNFFNIDPAEPELRPHPLGI 437

>AK1D1_RAT (P31210) 3-oxo-5-beta-steroid 4-dehydrogenase (EC 1.3.99.6)|
           (Delta(4)-3-ketosteroid 5-beta-reductase) (Aldo-keto
           reductase family 1 member D1)
          Length = 326

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 317 PYGTGGQPRWVNYSSP*EIVSKVMVHRGEQTNRNPHQV 204
           P GT   P WVN SSP  +  +++   G++ N+   Q+
Sbjct: 221 PLGTCRNPLWVNVSSPPLLKDELLTSLGKKYNKTQAQI 258

>RIBF_MYCPN (P75587) Putative riboflavin biosynthesis protein ribF [Includes:|
           Riboflavin kinase (EC 2.7.1.26) (Flavokinase); FMN
           adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase)
           (FAD synthetase)]
          Length = 269

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +3

Query: 129 GPIPTPLMARVSFLSDDWL------KSSLREHLMGVSVGLLSTMNHNLAYNLSWRTIIDP 290
           GP+   L+A +  L  DWL      +  L++H   V V     + HN++    +  II P
Sbjct: 26  GPVVALLIANIPSLQSDWLYEPKQRQVQLQQHFQSV-VHSYDVIEHNISAQAFFDQIISP 84

Query: 291 AR 296
            R
Sbjct: 85  LR 86

>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc|
            binding protein 2) (Protein associated with Myc)
            (Pam/highwire/rpm-1 protein)
          Length = 4641

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = +3

Query: 189  SSLREHLMGV--SVGLLSTMNHNLAYNLSWRTIIDPARLSSSSIREQLEHSLLSSIKYTY 362
            + L+EH++G+  S   L+ +   +  +     I+   R+ ++ +RE+ EH++ S      
Sbjct: 3909 ADLKEHMVGIIFSRSKLTNLQKQVCAH-----IVQAIRMEATRVREEWEHAISSKENANS 3963

Query: 363  KIDQRDSSMRPTRGYAFLSSSQVGGLAPDSKSIRFVRQEFDL 488
            + +  D+S   +  Y F   S V  L+  +   +++ Q+  L
Sbjct: 3964 QPNDEDAS---SDAYCFELLSMVLALSGSNVGRQYLAQQLTL 4002

>OTX1L_BRARE (Q90267) Homeobox protein Otx1l (ZOTX3)|
          Length = 338

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = -3

Query: 235 ESKPTETPIRCSLSEDFNQSSERNDTRAISGVGI-------GPILGIMAPTLSSIV*SKP 77
           ES    TP   S S   + SS  ++  A+SGVG+        P+  I +P   S V + P
Sbjct: 123 ESSGHFTPPAVSSSSSSSSSSSGSNPSALSGVGLISSSSSGTPVPSIWSPAPVSPVPAPP 182

Query: 76  RRPDASQVLTVS 41
             PD S   + S
Sbjct: 183 SLPDISPPASAS 194

>GLMM_CORGL (Q8NST4) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 447

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 102 SVGAIIPRIGPIPTPLMARVSFLSDDWLKSSLREHLMGVSVGLLSTMNHN 251
           S G  + R+G IPTP    V+FL+DD+          G  +G++ + +HN
Sbjct: 70  SQGVDVIRVGVIPTP---AVAFLTDDY----------GADMGVMISASHN 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,384,935
Number of Sequences: 219361
Number of extensions: 1456587
Number of successful extensions: 3701
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3701
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)