ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags12l05 |
|---|---|
| Clone Library Name | barley_pub |
>T2AG_ORYSA (Q94HL5) Transcription initiation factor IIA gamma chain| (TFIIA-gamma) Length = 106 Score = 196 bits (499), Expect = 3e-50 Identities = 97/103 (94%), Positives = 100/103 (97%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKGHL 405 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKV++KGHL Sbjct: 4 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHL 63 Query: 404 HTYRFCDNVWTFILTDAQFKNEEITEQVSKVKIVACDSKLLSQ 276 HTYRFCDNVWTFILT+A FKNEE TEQV KVKIVACDSKLLSQ Sbjct: 64 HTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106
>T2AG_ARATH (Q39236) Transcription initiation factor IIA gamma chain| (TFIIA-gamma) Length = 106 Score = 181 bits (459), Expect = 1e-45 Identities = 88/103 (85%), Positives = 97/103 (94%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKGHL 405 FELYRRSTIGMCLTETLDEMV SGTLSPELAIQVLVQFDKSMTEALE+QVK+KV++KGHL Sbjct: 4 FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHL 63 Query: 404 HTYRFCDNVWTFILTDAQFKNEEITEQVSKVKIVACDSKLLSQ 276 HTYRFCDNVWTFIL DA FK+++ E VS+VKIVACDSKLL+Q Sbjct: 64 HTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106
>T2AG_ONCMY (Q90YG6) Transcription initiation factor IIA gamma chain (TFIIA P12| subunit) (TFIIA-12) (TFIIAS) (TFIIA-gamma) Length = 108 Score = 117 bits (294), Expect = 2e-26 Identities = 52/99 (52%), Positives = 76/99 (76%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKGHL 405 ++LYR +T+G L E+LDE++ + ++P+LA+QVL+QFDK++ AL N+V+++V KG L Sbjct: 3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFKGSL 62 Query: 404 HTYRFCDNVWTFILTDAQFKNEEITEQVSKVKIVACDSK 288 +TYRFCDNVWTF+L D +F+ +V KVKIVACD K Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101
>T2AG_RAT (O08950) Transcription initiation factor IIA gamma chain (TFIIA P12| subunit) (TFIIA-12) (TFIIAS) (TFIIA-gamma) Length = 109 Score = 116 bits (290), Expect = 5e-26 Identities = 54/101 (53%), Positives = 79/101 (78%), Gaps = 2/101 (1%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKGHL 405 ++LYR +T+G L E+LDE++ S ++P+LA+QVL+QFDK++ AL +V+++V +G L Sbjct: 3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSL 62 Query: 404 HTYRFCDNVWTFILTDAQFKNEEITE--QVSKVKIVACDSK 288 +TYRFCDNVWTF+L D +F+ E+TE +V KVKIVACD K Sbjct: 63 NTYRFCDNVWTFVLNDVEFR--EVTELIKVDKVKIVACDGK 101
>T2AG_MOUSE (Q80ZM7) Putative transcription initiation factor IIA gamma chain| (TFIIA P12 subunit) (TFIIA-12) (TFIIAS) (TFIIA-gamma) Length = 109 Score = 116 bits (290), Expect = 5e-26 Identities = 54/101 (53%), Positives = 79/101 (78%), Gaps = 2/101 (1%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKGHL 405 ++LYR +T+G L E+LDE++ S ++P+LA+QVL+QFDK++ AL +V+++V +G L Sbjct: 3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSL 62 Query: 404 HTYRFCDNVWTFILTDAQFKNEEITE--QVSKVKIVACDSK 288 +TYRFCDNVWTF+L D +F+ E+TE +V KVKIVACD K Sbjct: 63 NTYRFCDNVWTFVLNDVEFR--EVTELIKVDKVKIVACDGK 101
>T2AG_HUMAN (P52657) Transcription initiation factor IIA gamma chain (TFIIA P12| subunit) (TFIIA-12) (TFIIAS) (TFIIA-gamma) Length = 109 Score = 115 bits (289), Expect = 7e-26 Identities = 54/101 (53%), Positives = 79/101 (78%), Gaps = 2/101 (1%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKGHL 405 ++LYR +T+G L E+LDE++ S ++P+LA+QVL+QFDK++ AL +V+++V +G L Sbjct: 3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSL 62 Query: 404 HTYRFCDNVWTFILTDAQFKNEEITE--QVSKVKIVACDSK 288 +TYRFCDNVWTF+L D +F+ E+TE +V KVKIVACD K Sbjct: 63 NTYRFCDNVWTFVLNDVEFR--EVTELIKVDKVKIVACDGK 101
>T2AG_PAROL (Q9IA78) Transcription initiation factor IIA gamma chain (TFIIA P12| subunit) (TFIIA-12) (TFIIAS) (TFIIA-gamma) Length = 111 Score = 114 bits (286), Expect = 2e-25 Identities = 50/99 (50%), Positives = 76/99 (76%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKGHL 405 ++LYR +T+G L E+LDE++ + ++P+LA+QVL+QFDK++ AL ++V+++V +G L Sbjct: 3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALASRVRNRVNFRGSL 62 Query: 404 HTYRFCDNVWTFILTDAQFKNEEITEQVSKVKIVACDSK 288 +TYRFCDNVWTF+L D +F+ +V KVKIVACD K Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101
>T2AG_SCHPO (O74948) Probable transcription initiation factor IIA small chain| Length = 107 Score = 112 bits (281), Expect = 6e-25 Identities = 53/99 (53%), Positives = 75/99 (75%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKGHL 405 +ELYRRS I LT+ LD+++S G +SP+LA++VL FDKSMTEAL +V+S++T KGHL Sbjct: 5 YELYRRSRIS--LTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 62 Query: 404 HTYRFCDNVWTFILTDAQFKNEEITEQVSKVKIVACDSK 288 TYRFCD VWTFI+ + F+ + T +K++IVAC ++ Sbjct: 63 DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 101
>T2AG_DROME (P52656) Transcription initiation factor IIA gamma chain (TFIIA P14| subunit) (TFIIA-14) (dTFIIA-S) (TFIIA-gamma) Length = 106 Score = 111 bits (277), Expect = 2e-24 Identities = 53/100 (53%), Positives = 73/100 (73%), Gaps = 1/100 (1%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVK-GH 408 ++LYR +T+G L E+LDE++ G ++P LA +VL+QFDKS+ AL +VK++VT K G Sbjct: 3 YQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAGK 62 Query: 407 LHTYRFCDNVWTFILTDAQFKNEEITEQVSKVKIVACDSK 288 L+TYRFCDNVWT +L D +F+ +V KVKIVACD K Sbjct: 63 LNTYRFCDNVWTLMLNDVEFREVHEIVKVDKVKIVACDGK 102
>TOA2_YEAST (P32774) Transcription initiation factor IIA small chain (TFIIA| 13.5 kDa subunit) Length = 122 Score = 95.5 bits (236), Expect = 1e-19 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 14/113 (12%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKGHL 405 +ELYRRSTIG L + LD ++S G + LA++VL FDK + E L++ +SK+TVKG+L Sbjct: 7 YELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVKGNL 66 Query: 404 HTYRFCDNVWTFILTDAQFKNEEITE--------------QVSKVKIVACDSK 288 TY FCD+VWTFI+ + Q E+ V K++IVAC+SK Sbjct: 67 DTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIVACNSK 119
>YMYD_CAEEL (Q9BIB4) Transcription initiation factor IIA small chain homolog| Length = 139 Score = 87.8 bits (216), Expect = 2e-17 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 3/105 (2%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVT-VKGH 408 + LYR +T+G L +TL++M S G L+ LA +VL QFDKSM + + K K+ Sbjct: 4 YALYRGTTLGQALDKTLEDMESEGLLTKSLASKVLQQFDKSMNKQISRLPKEKMNFCATQ 63 Query: 407 LHTYRFCDNVWTFILTDAQFKNEE--ITEQVSKVKIVACDSKLLS 279 L TYR+CDNVWTFIL + K+ + E + K+K+VACD + S Sbjct: 64 LLTYRYCDNVWTFILNNVTLKDPQRSFDEPIDKLKVVACDGRQTS 108
>T2AH_DROME (Q9W5B9) Transcription initiation factor IIA gamma-2 chain| (TFIIA-gamma-2) Length = 107 Score = 84.0 bits (206), Expect = 3e-16 Identities = 41/97 (42%), Positives = 67/97 (69%), Gaps = 1/97 (1%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKGH- 408 ++ YR +T+G L +TLDEM+ G ++ ++A VL+++DKS++ AL++ S ++ Sbjct: 3 YQHYRATTLGRTLQDTLDEMMERGDITKKIANLVLLRYDKSISTALKDHGTSNMSFTAER 62 Query: 407 LHTYRFCDNVWTFILTDAQFKNEEITEQVSKVKIVAC 297 L T+R CDNVWT IL DA+F+ ++ + +V VKIVAC Sbjct: 63 LETFRCCDNVWTLILKDAEFREDQHSLKVDVVKIVAC 99
>T2AG_CAEEL (Q9NEX2) Probable transcription initiation factor IIA gamma chain| (TFIIA P12 subunit) (TFIIA-12) (TFIIAS) (TFIIA-gamma) Length = 113 Score = 79.7 bits (195), Expect = 6e-15 Identities = 38/104 (36%), Positives = 62/104 (59%), Gaps = 1/104 (0%) Frame = -2 Query: 584 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVTVKG-H 408 ++LYR +T+G L +TLD+ V + L+ +++ FDKS+ + L ++ K+KV + Sbjct: 6 YQLYRNTTLGQALQKTLDDFVGDQMIPDSLSKKIMDSFDKSINKILPHKAKNKVNFRADK 65 Query: 407 LHTYRFCDNVWTFILTDAQFKNEEITEQVSKVKIVACDSKLLSQ 276 L YR+CDNVWTFI+ ++ V ++KIVACD + Q Sbjct: 66 LRAYRYCDNVWTFIVEQIDLRDAVEGGTVDRLKIVACDGQTKGQ 109
>SCG1_HUMAN (P05060) Secretogranin-1 precursor (Secretogranin I) (SgI)| (Chromogranin B) (CgB) [Contains: GAWK peptide; CCB peptide] Length = 677 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/78 (29%), Positives = 32/78 (41%) Frame = -1 Query: 540 DARRDGLQRHPQPRARHPSARPVRQVYDGGAGKPSEEQGYCQGPSAHLQVLRQRLDVHSN 361 DA + +R +PR H +RP R G PSEE+G+ Q S V L + Sbjct: 269 DATSEVDKRRTRPRHHHGRSRPDRS--SQGGSLPSEEKGHPQEESEESNVSMASLGEKRD 326 Query: 360 *RAVQERGDHRTGEQGED 307 + R E GE+ Sbjct: 327 HHSTHYRASEEEPEYGEE 344
>GR65A_DROME (Q8IQ72) Putative chemosensory receptor 65a| Length = 408 Score = 31.2 bits (69), Expect = 2.3 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 17/92 (18%) Frame = +2 Query: 11 LLAATYSSSHH------------QLCSIKSSGXTTL---QRNKXWEKVLRMRCHA--LAL 139 +L ATYS HH +L S+ SG + Q EK++R+R + + + Sbjct: 224 VLIATYSELHHCTRRISNDMDKLRLHSVHESGQFMVLVKQLQGITEKLIRLRQNVFHITV 283 Query: 140 HGMRFYRCPWKAKAAMSVVAFFSSRGRDSNEF 235 +R +R W ++ FFS +D N F Sbjct: 284 RIIRHFRFHWLCAIIYGLLPFFSLTAKDQNGF 315
>MSRA_VIBCH (Q9KP30) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 212 Score = 29.6 bits (65), Expect = 6.7 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Frame = -1 Query: 462 YDGGAGKPSEEQGYCQGPSAHLQVLR-----QRLDVHSN*RAVQERGDHRTG-EQGEDRG 301 Y GG + C G + H +V+R +RL + RA ER D G QG DRG Sbjct: 72 YSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFWERHDPTQGMRQGNDRG 131
>MRS2_ASPFU (Q4WCV3) Inner membrane magnesium transporter mrs2, mitochondrial| precursor (RNA-splicing protein mrs2) Length = 597 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Frame = -1 Query: 549 PHRDARRDGLQRHPQPRAR-HPSARPVRQVYDGGAGK-----PSEEQGYCQGPSAHLQVL 388 PHR + L R P P AR H S+RP + G AG+ P Y + S + L Sbjct: 67 PHRTTLQTSLVRTPTPAARSHSSSRPRLWLCAGQAGRSSSIFPLSNAPYSRSASTKSRPL 126 Query: 387 RQRL 376 +RL Sbjct: 127 LRRL 130
>GAGO_DROME (Q8I7Q0) Retrovirus-related Gag polyprotein from transposon opus| Length = 417 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/94 (27%), Positives = 42/94 (44%) Frame = -1 Query: 576 LQAVHHRHVPHRDARRDGLQRHPQPRARHPSARPVRQVYDGGAGKPSEEQGYCQGPSAHL 397 LQ V R+ ++ + G R P +H + P R + G+G+ S+ QGP Sbjct: 244 LQNVMSRNFTAQNYQPSGAPRFAGPY-QHQARPPFRTPFSPGSGRFSQNSYRTQGP---- 298 Query: 396 QVLRQRLDVHSN*RAVQERGDHRTGEQGEDRGLR 295 RQ + + SN R+ Q +G Q E G++ Sbjct: 299 ---RQAIKMESN-RSGQSYQSGYSGRQEEGSGIK 328
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 29.3 bits (64), Expect = 8.7 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 19/104 (18%) Frame = -1 Query: 555 HVPHRDARRDGLQRHPQPRARHPSARPVRQVYDGG--------------AGKPSEEQGYC 418 H R + G Q+ P P + RQ +GG G+ +E GY Sbjct: 260 HQQGRQGQEGGYQQRP-PGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQ 318 Query: 417 QGPSA-----HLQVLRQRLDVHSN*RAVQERGDHRTGEQGEDRG 301 Q PS H Q + + + + Q++G H+ G QG++ G Sbjct: 319 QRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGG 362 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,790,147 Number of Sequences: 219361 Number of extensions: 1121388 Number of successful extensions: 3837 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3698 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3817 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
