| Clone Name | bags12l05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008998.1| Triticum aestivum clone wdk2c.pk013.l7:fis, full insert mRNA sequence Length = 779 Score = 500 bits (252), Expect = e-138 Identities = 300/316 (94%) Strand = Plus / Minus Query: 266 gagctgcttattgactgagcagcttggagtcgcaggccacgatcttcaccttgctcacct 325 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 447 gagctgcttattggctgagtagcttggagtcgcaggccacgatcttcaccttgcccacct 388 Query: 326 gttcggtgatctcctcgttcttgaactgcgcgtcagttagaatgaacgtccagacgttgt 385 | ||||| ||||||| ||||||||||||||||| |||| ||||| ||||| ||||||| Sbjct: 387 gctcggtcgtctcctcattcttgaactgcgcgtcggttaatatgaatgtccacacgttgt 328 Query: 386 cgcagaacctgtaggtgtgcagatggcccttgacagtaaccttgctcttcacttggtttt 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 cgcagaacctgtaggtgtgcagatggcccttgacagtaaccttgctcttcacttggtttt 268 Query: 446 ccagcgcctccgtcatagacttgtcgaactggacgagcacttggatggcgagctcggggc 505 |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 267 ccagtgcctccgtcatagacttatcgaactggactagcacttggatggcgagctcggggc 208 Query: 506 tgagggtgccgctggagaccatctcgtcgagcgtctcggtgaggcacatgccgatggtgg 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 tgagggtgccgctggagaccatctcgtcgagcgtctcggtgaggcacatgccgatggtgg 148 Query: 566 accgcctgtagagctc 581 |||||||||| ||||| Sbjct: 147 accgcctgtacagctc 132
>gb|BT008987.1| Triticum aestivum clone wdk2c.pk009.e16:fis, full insert mRNA sequence Length = 725 Score = 478 bits (241), Expect = e-131 Identities = 298/317 (94%) Strand = Plus / Minus Query: 265 cgagctgcttattgactgagcagcttggagtcgcaggccacgatcttcaccttgctcacc 324 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| Sbjct: 439 cgagctgcttattggctgagtagcttggagtcgcaggccacgatcttcaccttgcccacc 380 Query: 325 tgttcggtgatctcctcgttcttgaactgcgcgtcagttagaatgaacgtccagacgttg 384 || ||||| ||||||||||||||||||||||||| || || ||||| ||||| |||||| Sbjct: 379 tgctcggtcgtctcctcgttcttgaactgcgcgtccgtcaggatgaatgtccacacgttg 320 Query: 385 tcgcagaacctgtaggtgtgcagatggcccttgacagtaaccttgctcttcacttggttt 444 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 319 tcgcagaacctgtaggtgtgcagatggcccttgacagtaaccttgctcttcacttgggtt 260 Query: 445 tccagcgcctccgtcatagacttgtcgaactggacgagcacttggatggcgagctcgggg 504 ||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct: 259 tccagtgcgtccgtcatagacttatcgaactggacaagcacttggatggcgagctcaggg 200 Query: 505 ctgagggtgccgctggagaccatctcgtcgagcgtctcggtgaggcacatgccgatggtg 564 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 199 ctgagggtgccgctggagaccatctcgtcgagcgtctcggtgaggcacatgccaatggtg 140 Query: 565 gaccgcctgtagagctc 581 ||||||||||| ||||| Sbjct: 139 gaccgcctgtacagctc 123 Score = 44.1 bits (22), Expect = 0.51 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 55 tatcaaaagttcagggnaaacaacattaca 84 |||||||||||||||| ||||||||||||| Sbjct: 640 tatcaaaagttcaggg-aaacaacattaca 612
>gb|AY104120.1| Zea mays PCO142836 mRNA sequence Length = 908 Score = 303 bits (153), Expect = 3e-79 Identities = 249/281 (88%) Strand = Plus / Minus Query: 301 gccacgatcttcaccttgctcacctgttcggtgatctcctcgttcttgaactgcgcgtca 360 ||||| ||||||||||||| |||||| || ||| ||||||||||||||| ||||| Sbjct: 440 gccacaatcttcaccttgcccacctgctccgtggcctcctcgttcttgaagcttgcgtct 381 Query: 361 gttagaatgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgaca 420 || | ||||| ||||| || ||||| |||||||||||||||||||| || ||||||||| Sbjct: 380 gtcaagatgaaggtccacacattgtcacagaacctgtaggtgtgcaggtgacccttgaca 321 Query: 421 gtaaccttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacg 480 ||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||| Sbjct: 320 gtaaccttgctcttcacttggttctccagagcatccgtcatggacttgtcgaactggacg 261 Query: 481 agcacttggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtc 540 || || ||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 260 aggacctggatagcgagctccgggctgagggtgccgttggagaccatctcgtcgagcgtc 201 Query: 541 tcggtgaggcacatgccgatggtggaccgcctgtagagctc 581 |||||||||||||||||||||||||||| || ||| ||||| Sbjct: 200 tcggtgaggcacatgccgatggtggacctccggtacagctc 160
>dbj|AK065182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D19, full insert sequence Length = 906 Score = 272 bits (137), Expect = 1e-69 Identities = 266/309 (86%) Strand = Plus / Minus Query: 273 ttattgactgagcagcttggagtcgcaggccacgatcttcaccttgctcacctgttcggt 332 |||||| ||||| || ||||| || |||||||| ||||||||||||| || ||||| || Sbjct: 530 ttattggctgagtagtttggaatcacaggccacaatcttcaccttgccaacttgttctgt 471 Query: 333 gatctcctcgttcttgaactgcgcgtcagttagaatgaacgtccagacgttgtcgcagaa 392 |||||||||||||||| || ||||| | ||||| ||||| || ||||| ||||| Sbjct: 470 agtctcctcgttcttgaatgatgcttcagtcaagatgaatgtccatacattgtcacagaa 411 Query: 393 cctgtaggtgtgcagatggcccttgacagtaaccttgctcttcacttggttttccagcgc 452 |||||| |||||||| |||||||||| || |||||||||||| |||||||| |||| || Sbjct: 410 cctgtaagtgtgcaggtggcccttgatagaaaccttgctcttgacttggttctccaaggc 351 Query: 453 ctccgtcatagacttgtcgaactggacgagcacttggatggcgagctcggggctgagggt 512 |||||||||||||| || |||||||| || ||||| ||||||||||| ||||||||||| Sbjct: 350 ttccgtcatagacttatcaaactggacaagaacttgaatggcgagctccgggctgagggt 291 Query: 513 gccgctggagaccatctcgtcgagcgtctcggtgaggcacatgccgatggtggaccgcct 572 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || Sbjct: 290 gccgctggagaccatctcgtcgagcgtctcagtgaggcacatgccaatggtggacctccg 231 Query: 573 gtagagctc 581 ||||||||| Sbjct: 230 gtagagctc 222
>gb|AY643717.1| Oryza sativa (indica cultivar-group) transcription factor IIA gamma subunit (TFIIAy) mRNA, partial cds Length = 318 Score = 258 bits (130), Expect = 2e-65 Identities = 259/302 (85%) Strand = Plus / Minus Query: 280 ctgagcagcttggagtcgcaggccacgatcttcaccttgctcacctgttcggtgatctcc 339 ||||| || ||||| || |||||||| ||||||||||||| || ||||| || ||||| Sbjct: 314 ctgagtagtttggaatcacaggccacaatcttcaccttgccaacttgttctgtagtctcc 255 Query: 340 tcgttcttgaactgcgcgtcagttagaatgaacgtccagacgttgtcgcagaacctgtag 399 ||||||||||| || ||||| | ||||| ||||| || ||||| ||||||||||| Sbjct: 254 tcgttcttgaatgatgcttcagtcaagatgaatgtccatacattgtcacagaacctgtaa 195 Query: 400 gtgtgcagatggcccttgacagtaaccttgctcttcacttggttttccagcgcctccgtc 459 |||||||| |||||||||| || |||||||||||| |||||||| |||| || |||||| Sbjct: 194 gtgtgcaggtggcccttgatagaaaccttgctcttgacttggttctccaaggcttccgtc 135 Query: 460 atagacttgtcgaactggacgagcacttggatggcgagctcggggctgagggtgccgctg 519 |||||||| || |||||||| || ||||| ||||| ||||| |||||||||||||||||| Sbjct: 134 atagacttatcaaactggacaagaacttgaatggcaagctccgggctgagggtgccgctg 75 Query: 520 gagaccatctcgtcgagcgtctcggtgaggcacatgccgatggtggaccgcctgtagagc 579 ||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||| Sbjct: 74 gagaccatctcgtcgagcgtctcagtgaggcacatgccaatggtggacctccggtagagc 15 Query: 580 tc 581 || Sbjct: 14 tc 13
>gb|AY643716.1| Oryza sativa (indica cultivar-group) transcription factor IIA gamma subunit (TFIIAy) mRNA, partial cds Length = 318 Score = 250 bits (126), Expect = 4e-63 Identities = 258/302 (85%) Strand = Plus / Minus Query: 280 ctgagcagcttggagtcgcaggccacgatcttcaccttgctcacctgttcggtgatctcc 339 ||||| || ||||| || |||||||| ||||||||||||| || ||||| || ||||| Sbjct: 314 ctgagtagtttggaatcacaggccacaatcttcaccttgccaacttgttctgtagtctcc 255 Query: 340 tcgttcttgaactgcgcgtcagttagaatgaacgtccagacgttgtcgcagaacctgtag 399 ||||||||||| || ||||| | ||||| ||||| || ||||| ||||||||||| Sbjct: 254 tcgttcttgaatgatgcttcagtcaagatgaatgtccatacattgtcacagaacctgtaa 195 Query: 400 gtgtgcagatggcccttgacagtaaccttgctcttcacttggttttccagcgcctccgtc 459 |||||||| |||||||||| || |||||||||||| |||||||| |||| || |||||| Sbjct: 194 gtgtgcaggtggcccttgatagaaaccttgctcttgacttggttctccaaggcttccgtc 135 Query: 460 atagacttgtcgaactggacgagcacttggatggcgagctcggggctgagggtgccgctg 519 |||||||| || ||||| | || ||||| ||||||||||| |||||||||||||||||| Sbjct: 134 atagacttatcaaactgctcaagaacttgaatggcgagctccgggctgagggtgccgctg 75 Query: 520 gagaccatctcgtcgagcgtctcggtgaggcacatgccgatggtggaccgcctgtagagc 579 ||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||| Sbjct: 74 gagaccatctcgtcgagcgtctcagtgaggcacatgccaatggtggacctccggtagagc 15 Query: 580 tc 581 || Sbjct: 14 tc 13
>gb|BT017202.1| Zea mays clone EL01N0371G10.c mRNA sequence Length = 851 Score = 168 bits (85), Expect = 1e-38 Identities = 109/117 (93%) Strand = Plus / Minus Query: 465 cttgtcgaactggacgagcacttggatggcgagctcggggctgagggtgccgctggagac 524 |||||||||||||||||| || ||||| |||||||| ||||||||||||||| ||||||| Sbjct: 241 cttgtcgaactggacgaggacctggatagcgagctccgggctgagggtgccgttggagac 182 Query: 525 catctcgtcgagcgtctcggtgaggcacatgccgatggtggaccgcctgtagagctc 581 |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct: 181 catctcgtcgagcgtctcggtgaggcacatgccgatggtggacctccggtacagctc 125 Score = 139 bits (70), Expect = 1e-29 Identities = 142/166 (85%) Strand = Plus / Minus Query: 301 gccacgatcttcaccttgctcacctgttcggtgatctcctcgttcttgaactgcgcgtca 360 ||||| ||||||||||||| |||||| || ||| ||||||||||||||| ||||| Sbjct: 499 gccacaatcttcaccttgcccacctgctccgtggcctcctcgttcttgaagcttgcgtct 440 Query: 361 gttagaatgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgaca 420 || | ||||| ||||| || ||||| |||||||||||||||||||| || ||||||||| Sbjct: 439 gtcaagatgaaggtccacacattgtcacagaacctgtaggtgtgcaggtgacccttgaca 380 Query: 421 gtaaccttgctcttcacttggttttccagcgcctccgtcatagact 466 ||||||||||||||||||||||| ||||| || |||||||| |||| Sbjct: 379 gtaaccttgctcttcacttggttctccagagcatccgtcatggact 334
>gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0068N01, complete sequence Length = 152233 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 472 aactggacgagcacttggatggcgagctcggggctgagggtgccgctggagaccatctcg 531 |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 67807 aactggacaagaacttgaatggcgagctccgggctgagggtgccgctggagaccatctcg 67748 Query: 532 tcgagcgtctcggtgaggcacatgccgatggtggaccgcctgtagagctc 581 ||||||||||| |||||||||||||| |||||||||| || ||||||||| Sbjct: 67747 tcgagcgtctcagtgaggcacatgccaatggtggacctccggtagagctc 67698 Score = 77.8 bits (39), Expect = 4e-11 Identities = 117/143 (81%) Strand = Plus / Minus Query: 273 ttattgactgagcagcttggagtcgcaggccacgatcttcaccttgctcacctgttcggt 332 |||||| ||||| || ||||| || |||||||| ||||||||||||| || ||||| || Sbjct: 73195 ttattggctgagtagtttggaatcacaggccacaatcttcaccttgccaacttgttctgt 73136 Query: 333 gatctcctcgttcttgaactgcgcgtcagttagaatgaacgtccagacgttgtcgcagaa 392 |||||||||||||||| || ||||| | ||||| ||||| || ||||| ||||| Sbjct: 73135 agtctcctcgttcttgaatgatgcttcagtcaagatgaatgtccatacattgtcacagaa 73076 Query: 393 cctgtaggtgtgcagatggccct 415 |||||| |||||||| ||||||| Sbjct: 73075 cctgtaagtgtgcaggtggccct 73053 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 413 ccttgacagtaaccttgctcttcacttggttttccagcgcctccgtcatagact 466 |||||| || |||||||||||| |||||||| |||| || ||||||||||||| Sbjct: 67960 ccttgatagaaaccttgctcttgacttggttctccaaggcttccgtcatagact 67907
>gb|AF532975.1| Oryza sativa (indica cultivar-group) IR24 chromosome 5 BAC, complete sequence Length = 86190 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 472 aactggacgagcacttggatggcgagctcggggctgagggtgccgctggagaccatctcg 531 |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 67019 aactggacaagaacttgaatggcgagctccgggctgagggtgccgctggagaccatctcg 66960 Query: 532 tcgagcgtctcggtgaggcacatgccgatggtggaccgcctgtagagctc 581 ||||||||||| |||||||||||||| |||||||||| || ||||||||| Sbjct: 66959 tcgagcgtctcagtgaggcacatgccaatggtggacctccggtagagctc 66910 Score = 77.8 bits (39), Expect = 4e-11 Identities = 117/143 (81%) Strand = Plus / Minus Query: 273 ttattgactgagcagcttggagtcgcaggccacgatcttcaccttgctcacctgttcggt 332 |||||| ||||| || ||||| || |||||||| ||||||||||||| || ||||| || Sbjct: 72380 ttattggctgagtagtttggaatcacaggccacaatcttcaccttgccaacttgttctgt 72321 Query: 333 gatctcctcgttcttgaactgcgcgtcagttagaatgaacgtccagacgttgtcgcagaa 392 |||||||||||||||| || ||||| | ||||| ||||| || ||||| ||||| Sbjct: 72320 agtctcctcgttcttgaatgatgcttcagtcaagatgaatgtccatacattgtcacagaa 72261 Query: 393 cctgtaggtgtgcagatggccct 415 |||||| |||||||| ||||||| Sbjct: 72260 cctgtaagtgtgcaggtggccct 72238 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 413 ccttgacagtaaccttgctcttcacttggttttccagcgcctccgtcatagact 466 |||||| || |||||||||||| |||||||| |||| || ||||||||||||| Sbjct: 67172 ccttgatagaaaccttgctcttgacttggttctccaaggcttccgtcatagact 67119
>gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence Length = 151589 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 472 aactggacgagcacttggatggcgagctcggggctgagggtgccgctggagaccatctcg 531 |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 5958 aactggacaagaacttgaatggcgagctccgggctgagggtgccgctggagaccatctcg 5899 Query: 532 tcgagcgtctcggtgaggcacatgccgatggtggaccgcctgtagagctc 581 ||||||||||| |||||||||||||| |||||||||| || ||||||||| Sbjct: 5898 tcgagcgtctcagtgaggcacatgccaatggtggacctccggtagagctc 5849 Score = 77.8 bits (39), Expect = 4e-11 Identities = 117/143 (81%) Strand = Plus / Minus Query: 273 ttattgactgagcagcttggagtcgcaggccacgatcttcaccttgctcacctgttcggt 332 |||||| ||||| || ||||| || |||||||| ||||||||||||| || ||||| || Sbjct: 11346 ttattggctgagtagtttggaatcacaggccacaatcttcaccttgccaacttgttctgt 11287 Query: 333 gatctcctcgttcttgaactgcgcgtcagttagaatgaacgtccagacgttgtcgcagaa 392 |||||||||||||||| || ||||| | ||||| ||||| || ||||| ||||| Sbjct: 11286 agtctcctcgttcttgaatgatgcttcagtcaagatgaatgtccatacattgtcacagaa 11227 Query: 393 cctgtaggtgtgcagatggccct 415 |||||| |||||||| ||||||| Sbjct: 11226 cctgtaagtgtgcaggtggccct 11204 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 413 ccttgacagtaaccttgctcttcacttggttttccagcgcctccgtcatagact 466 |||||| || |||||||||||| |||||||| |||| || ||||||||||||| Sbjct: 6111 ccttgatagaaaccttgctcttgacttggttctccaaggcttccgtcatagact 6058
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 472 aactggacgagcacttggatggcgagctcggggctgagggtgccgctggagaccatctcg 531 |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 406160 aactggacaagaacttgaatggcgagctccgggctgagggtgccgctggagaccatctcg 406101 Query: 532 tcgagcgtctcggtgaggcacatgccgatggtggaccgcctgtagagctc 581 ||||||||||| |||||||||||||| |||||||||| || ||||||||| Sbjct: 406100 tcgagcgtctcagtgaggcacatgccaatggtggacctccggtagagctc 406051 Score = 77.8 bits (39), Expect = 4e-11 Identities = 117/143 (81%) Strand = Plus / Minus Query: 273 ttattgactgagcagcttggagtcgcaggccacgatcttcaccttgctcacctgttcggt 332 |||||| ||||| || ||||| || |||||||| ||||||||||||| || ||||| || Sbjct: 411548 ttattggctgagtagtttggaatcacaggccacaatcttcaccttgccaacttgttctgt 411489 Query: 333 gatctcctcgttcttgaactgcgcgtcagttagaatgaacgtccagacgttgtcgcagaa 392 |||||||||||||||| || ||||| | ||||| ||||| || ||||| ||||| Sbjct: 411488 agtctcctcgttcttgaatgatgcttcagtcaagatgaatgtccatacattgtcacagaa 411429 Query: 393 cctgtaggtgtgcagatggccct 415 |||||| |||||||| ||||||| Sbjct: 411428 cctgtaagtgtgcaggtggccct 411406 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 413 ccttgacagtaaccttgctcttcacttggttttccagcgcctccgtcatagact 466 |||||| || |||||||||||| |||||||| |||| || ||||||||||||| Sbjct: 406313 ccttgatagaaaccttgctcttgacttggttctccaaggcttccgtcatagact 406260 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 accatctcgtcgagcgtctc 542 |||||||||||||||||||| Sbjct: 13899356 accatctcgtcgagcgtctc 13899337
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 121 bits (61), Expect = 3e-24 Identities = 103/117 (88%) Strand = Plus / Minus Query: 465 cttgtcgaactggacgagcacttggatggcgagctcggggctgagggtgccgctggagac 524 |||||| ||||| ||||| |||||||||||||||||||||||||| | || |||||||| Sbjct: 42811956 cttgtcaaactgcacgaggacttggatggcgagctcggggctgagcgccccactggagac 42811897 Query: 525 catctcgtcgagcgtctcggtgaggcacatgccgatggtggaccgcctgtagagctc 581 ||| ||||| ||||| |||||||||||||| ||||||||||||| || ||| ||||| Sbjct: 42811896 catgtcgtccagcgtgtcggtgaggcacataccgatggtggacctccggtacagctc 42811840 Score = 87.7 bits (44), Expect = 4e-14 Identities = 109/128 (85%), Gaps = 2/128 (1%) Strand = Plus / Minus Query: 289 ttggagtcgcaggccacgatcttcaccttgctcacctgt-tcggtgatctcctcgttctt 347 ||||| |||||||||||||||||||||||| | | ||| || || ||||| |||||||| Sbjct: 42813119 ttggaatcgcaggccacgatcttcaccttgtttat-tgtctctgtaatctcttcgttctt 42813061 Query: 348 gaactgcgcgtcagttagaatgaacgtccagacgttgtcgcagaacctgtaggtgtgcag 407 ||| || || ||||| ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 42813060 gaaaattgcatctgttaggatgaaagtccacacattgtcgcagaacctgtaggtgtgcag 42813001 Query: 408 atggccct 415 |||||||| Sbjct: 42813000 atggccct 42812993 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 413 ccttgacagtaaccttgctcttcac 437 ||||||||||||||||||||||||| Sbjct: 42812094 ccttgacagtaaccttgctcttcac 42812070
>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1656_A11 Length = 148887 Score = 121 bits (61), Expect = 3e-24 Identities = 103/117 (88%) Strand = Plus / Minus Query: 465 cttgtcgaactggacgagcacttggatggcgagctcggggctgagggtgccgctggagac 524 |||||| ||||| ||||| |||||||||||||||||||||||||| | || |||||||| Sbjct: 144721 cttgtcaaactgcacgaggacttggatggcgagctcggggctgagcgccccactggagac 144662 Query: 525 catctcgtcgagcgtctcggtgaggcacatgccgatggtggaccgcctgtagagctc 581 ||| ||||| ||||| |||||||||||||| ||||||||||||| || ||| ||||| Sbjct: 144661 catgtcgtccagcgtgtcggtgaggcacataccgatggtggacctccggtacagctc 144605 Score = 87.7 bits (44), Expect = 4e-14 Identities = 109/128 (85%), Gaps = 2/128 (1%) Strand = Plus / Minus Query: 289 ttggagtcgcaggccacgatcttcaccttgctcacctgt-tcggtgatctcctcgttctt 347 ||||| |||||||||||||||||||||||| | | ||| || || ||||| |||||||| Sbjct: 145884 ttggaatcgcaggccacgatcttcaccttgtttat-tgtctctgtaatctcttcgttctt 145826 Query: 348 gaactgcgcgtcagttagaatgaacgtccagacgttgtcgcagaacctgtaggtgtgcag 407 ||| || || ||||| ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 145825 gaaaattgcatctgttaggatgaaagtccacacattgtcgcagaacctgtaggtgtgcag 145766 Query: 408 atggccct 415 |||||||| Sbjct: 145765 atggccct 145758 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 413 ccttgacagtaaccttgctcttcac 437 ||||||||||||||||||||||||| Sbjct: 144859 ccttgacagtaaccttgctcttcac 144835
>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518C01 Length = 173555 Score = 121 bits (61), Expect = 3e-24 Identities = 103/117 (88%) Strand = Plus / Minus Query: 465 cttgtcgaactggacgagcacttggatggcgagctcggggctgagggtgccgctggagac 524 |||||| ||||| ||||| |||||||||||||||||||||||||| | || |||||||| Sbjct: 5690 cttgtcaaactgcacgaggacttggatggcgagctcggggctgagcgccccactggagac 5631 Query: 525 catctcgtcgagcgtctcggtgaggcacatgccgatggtggaccgcctgtagagctc 581 ||| ||||| ||||| |||||||||||||| ||||||||||||| || ||| ||||| Sbjct: 5630 catgtcgtccagcgtgtcggtgaggcacataccgatggtggacctccggtacagctc 5574 Score = 87.7 bits (44), Expect = 4e-14 Identities = 109/128 (85%), Gaps = 2/128 (1%) Strand = Plus / Minus Query: 289 ttggagtcgcaggccacgatcttcaccttgctcacctgt-tcggtgatctcctcgttctt 347 ||||| |||||||||||||||||||||||| | | ||| || || ||||| |||||||| Sbjct: 6853 ttggaatcgcaggccacgatcttcaccttgtttat-tgtctctgtaatctcttcgttctt 6795 Query: 348 gaactgcgcgtcagttagaatgaacgtccagacgttgtcgcagaacctgtaggtgtgcag 407 ||| || || ||||| ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 6794 gaaaattgcatctgttaggatgaaagtccacacattgtcgcagaacctgtaggtgtgcag 6735 Query: 408 atggccct 415 |||||||| Sbjct: 6734 atggccct 6727 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 413 ccttgacagtaaccttgctcttcac 437 ||||||||||||||||||||||||| Sbjct: 5828 ccttgacagtaaccttgctcttcac 5804
>ref|NM_118577.3| Arabidopsis thaliana RNA polymerase II transcription factor AT4G24440 transcript variant AT4G24440.1 mRNA, complete cds Length = 692 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 393 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 334 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 333 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 274 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 273 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 214 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 213 agacacatcccgatcgtcgatctcctgtacagctcaaa 176
>ref|NM_179103.1| Arabidopsis thaliana RNA polymerase II transcription factor AT4G24440 transcript variant AT4G24440.2 mRNA, complete cds Length = 654 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 356 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 297 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 296 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 237 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 236 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 177 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 176 agacacatcccgatcgtcgatctcctgtacagctcaaa 139
>gb|AY463599.1| Arabidopsis thaliana TFIIA-S (At4g24440) mRNA, partial cds Length = 318 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 227 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 168 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 167 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 108 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 107 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 48 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 47 agacacatcccgatcgtcgatctcctgtacagctcaaa 10
>gb|AY096423.1| Arabidopsis thaliana putative transcription factor IIA small subunit (At4g24440) mRNA, complete cds Length = 352 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 227 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 168 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 167 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 108 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 107 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 48 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 47 agacacatcccgatcgtcgatctcctgtacagctcaaa 10
>gb|AY072192.1| Arabidopsis thaliana putative transcription factor IIA small subunit (At4g24440) mRNA, complete cds Length = 691 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 356 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 297 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 296 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 237 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 236 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 177 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 176 agacacatcccgatcgtcgatctcctgtacagctcaaa 139
>emb|AJ223634.1|ATAJ3634 Arabidopsis thaliana mRNA for transcription factor IIA small subunit Length = 702 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 383 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 324 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 323 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 264 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 263 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 204 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 203 agacacatcccgatcgtcgatctcctgtacagctcaaa 166
>emb|BX828763.1|CNS0A3DJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL37ZA01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 660 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 361 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 302 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 301 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 242 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 241 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 182 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 181 agacacatcccgatcgtcgatctcctgtacagctcaaa 144
>emb|BX828955.1|CNS0A2QH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL54ZE06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 649 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 371 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 312 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 311 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 252 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 251 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 192 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 191 agacacatcccgatcgtcgatctcctgtacagctcaaa 154
>emb|BX828928.1|CNS0A2QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL51ZH04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 645 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 346 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 287 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 286 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 227 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 226 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 167 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 166 agacacatcccgatcgtcgatctcctgtacagctcaaa 129
>emb|BX828919.1|CNS0A2NC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL50ZH02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 677 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 380 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatgggcacc 321 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 320 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 261 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 260 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 201 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 200 agacacatcccgatcgtcgatctcctgtacagctcaaa 163
>emb|BX828891.1|CNS0A2NR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL48ZB08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 667 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 382 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 323 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 322 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 263 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 262 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 203 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 202 agacacatcccgatcgtcgatctcctgtacagctcaaa 165
>gb|AY085740.1| Arabidopsis thaliana clone 17563 mRNA, complete sequence Length = 690 Score = 83.8 bits (42), Expect = 6e-13 Identities = 174/218 (79%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttgacagtaacc 426 ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||| | ||| Sbjct: 393 atgaaggtccagacattgtcacagaacctgtaagtgtgcaggtgtcccttgatggacacc 334 Query: 427 ttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcact 486 ||| ||||||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct: 333 ttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggact 274 Query: 487 tggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggtg 546 ||||| || ||||| ||||| || || ||||| ||||||||||| | ||||| || Sbjct: 273 tggatagctagctcagggctcagcgtaccgctctgaaccatctcgtccaaagtctccgtc 214 Query: 547 aggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 213 agacacatcccgatcgtcgatctcctgtacagctcaaa 176
>gb|AF220549.1|AF220549 Paralichthys olivaceus TFIIA P12 subunit mRNA, complete cds Length = 706 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 370 aacgtccagacgttgtcgcagaacctgtaggtgtgcaga 408 |||||||| ||||||||||||||||||||||||| |||| Sbjct: 314 aacgtccacacgttgtcgcagaacctgtaggtgttcaga 276
>ref|NM_208370.1| Eremothecium gossypii ABR071Wp (ABR071W), mRNA Length = 339 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttga 418 ||||||||||| |||| ||||||||||| ||| |||| ||| |||||||||| Sbjct: 236 atgaacgtccacacgtcgtcgcagaaccggtacgtgtccaggtggcccttga 185
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcagatggcccttga 418 ||||||||||| |||| ||||||||||| ||| |||| ||| |||||||||| Sbjct: 520534 atgaacgtccacacgtcgtcgcagaaccggtacgtgtccaggtggcccttga 520483
>emb|X98862.1|ATTFIIAS A.thaliana mRNA for small subunit of TFIIA Length = 701 Score = 54.0 bits (27), Expect = 5e-04 Identities = 173/219 (78%), Gaps = 2/219 (0%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtg-tgcagatggcccttgacagtaac 425 ||||| |||||||| ||||| | ||||||||| ||| ||||| || ||||||| | || Sbjct: 384 atgaaggtccagacattgtcac-gaacctgtaagtggtgcaggtgtcccttgatggacac 326 Query: 426 cttgctcttcacttggttttccagcgcctccgtcatagacttgtcgaactggacgagcac 485 |||| ||||||||||| | ||||| || || ||||| |||||||| || || || || || Sbjct: 325 cttggtcttcacttggctctccagagcttcagtcatggacttgtcaaattgaacaaggac 266 Query: 486 ttggatggcgagctcggggctgagggtgccgctggagaccatctcgtcgagcgtctcggt 545 |||||| || ||||| ||||| | ||| ||||| ||||||||||| | ||||| || Sbjct: 265 ttggatagctagctcagggctcacggtaccgctttgaaccatctcgtccaaagtctccgt 206 Query: 546 gaggcacatgccgatggtggaccgcctgtagagctcaaa 584 || ||||| ||||| || || | |||||| |||||||| Sbjct: 205 cagacacatcccgatcgtcgatctcctgtacagctcaaa 167
>emb|X83271.1|DMDTFIIAS D.melanogaster dTFIIA-S gene Length = 1476 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 294 gtcgcaggccacgatcttcaccttg 318 ||||||||||||||||||||||||| Sbjct: 1066 gtcgcaggccacgatcttcaccttg 1042
>emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BAC clone T22A6 (ESSA project) Length = 108459 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcag 407 ||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 85510 atgaaggtccagacattgtcacagaacctgtaagtgtgcag 85470
>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61 Length = 198402 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 367 atgaacgtccagacgttgtcgcagaacctgtaggtgtgcag 407 ||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 102167 atgaaggtccagacattgtcacagaacctgtaagtgtgcag 102127
>gb|AY113478.1| Drosophila melanogaster RE44302 full insert cDNA Length = 607 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 294 gtcgcaggccacgatcttcaccttg 318 ||||||||||||||||||||||||| Sbjct: 379 gtcgcaggccacgatcttcaccttg 355
>ref|NM_079743.2| Drosophila melanogaster Transcription-factor-IIA-S CG5163-RA (TfIIA-S), mRNA Length = 614 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 294 gtcgcaggccacgatcttcaccttg 318 ||||||||||||||||||||||||| Sbjct: 401 gtcgcaggccacgatcttcaccttg 377
>gb|AC007929.8|AC007929 Drosophila melanogaster, chromosome 3R, region 95A-95C, BAC clone BACR05C11, complete sequence Length = 171376 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 294 gtcgcaggccacgatcttcaccttg 318 ||||||||||||||||||||||||| Sbjct: 56034 gtcgcaggccacgatcttcaccttg 56058
>gb|AE003745.4| Drosophila melanogaster chromosome 3R, section 83 of 118 of the complete sequence Length = 230236 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 294 gtcgcaggccacgatcttcaccttg 318 ||||||||||||||||||||||||| Sbjct: 88926 gtcgcaggccacgatcttcaccttg 88950
>ref|NM_001020605.1| Danio rerio zgc:110584 (zgc:110584), mRNA Length = 768 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 370 aacgtccagacgttgtcgcagaacctgtaggtgtgcaga 408 |||||||||||||| || ||||||||||| |||| |||| Sbjct: 324 aacgtccagacgttatcacagaacctgtatgtgttcaga 286
>emb|CR450827.5| Zebrafish DNA sequence from clone CH211-112G6 in linkage group 13, complete sequence Length = 174505 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 370 aacgtccagacgttgtcgcagaacctgtaggtgtgcaga 408 |||||||||||||| || ||||||||||| |||| |||| Sbjct: 66930 aacgtccagacgttatcacagaacctgtatgtgttcaga 66968
>emb|CR456682.4| Zebrafish DNA sequence from clone CH211-32G19 in linkage group 13, complete sequence Length = 193213 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 370 aacgtccagacgttgtcgcagaacctgtaggtgtgcaga 408 |||||||||||||| || ||||||||||| |||| |||| Sbjct: 132825 aacgtccagacgttatcacagaacctgtatgtgttcaga 132787
>gb|BC095322.1| Danio rerio zgc:110584, mRNA (cDNA clone MGC:110584 IMAGE:7160924), complete cds Length = 768 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 370 aacgtccagacgttgtcgcagaacctgtaggtgtgcaga 408 |||||||||||||| || ||||||||||| |||| |||| Sbjct: 324 aacgtccagacgttatcacagaacctgtatgtgttcaga 286
>gb|AC147895.2| Xenopus tropicalis clone CH216-3D8, complete sequence Length = 212769 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 aggtgtgcagatggcccttga 418 ||||||||||||||||||||| Sbjct: 30440 aggtgtgcagatggcccttga 30460
>emb|Z97205.1|HS155D22 Human DNA sequence from clone RP1-155D22 on chromosome 6q27 Contains a novel gene, complete sequence Length = 148851 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 ctcttcacttggttttccagc 450 ||||||||||||||||||||| Sbjct: 462 ctcttcacttggttttccagc 442
>emb|BX005812.1|CNS08CNC Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA1BH10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 496 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 cgtccagacgttgtcgcagaa 392 ||||||||||||||||||||| Sbjct: 326 cgtccagacgttgtcgcagaa 306
>ref|XM_313653.2| Anopheles gambiae str. PEST ENSANGP00000013128 (ENSANGG00000010639), mRNA Length = 691 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 cgtccagacgttgtcgcagaa 392 ||||||||||||||||||||| Sbjct: 248 cgtccagacgttgtcgcagaa 228
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 ggtgatctcctcgttcttga 349 |||||||||||||||||||| Sbjct: 1445753 ggtgatctcctcgttcttga 1445772
>gb|AY440650.1| Armigeres subalbatus ASAP ID: 41525 transcription factor IIA S mRNA sequence Length = 635 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 372 cgtccagacgttgtcgcagaacctgtaggtgt 403 |||||| |||||||||||||||| ||| |||| Sbjct: 345 cgtccacacgttgtcgcagaaccggtacgtgt 314
>gb|AC135430.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0671E09, complete sequence Length = 158472 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 accatctcgtcgagcgtctc 542 |||||||||||||||||||| Sbjct: 116858 accatctcgtcgagcgtctc 116839
>ref|XM_445378.1| Candida glabrata CBS138, CAGL0C04719g partial mRNA Length = 585 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tgatctcctcgttcttgaac 351 |||||||||||||||||||| Sbjct: 247 tgatctcctcgttcttgaac 228
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 aggcgaaggcggcgatgtcg 190 |||||||||||||||||||| Sbjct: 711660 aggcgaaggcggcgatgtcg 711641
>emb|CR380949.1| Candida glabrata strain CBS138 chromosome C complete sequence Length = 558804 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tgatctcctcgttcttgaac 351 |||||||||||||||||||| Sbjct: 443072 tgatctcctcgttcttgaac 443091
>emb|AL929588.11| Mouse DNA sequence from clone RP23-87L24 on chromosome 2, complete sequence Length = 134787 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tacaggtgcccatggaaggc 174 |||||||||||||||||||| Sbjct: 3898 tacaggtgcccatggaaggc 3879
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 ggcgaaggcggcgatgtcgg 191 |||||||||||||||||||| Sbjct: 243417 ggcgaaggcggcgatgtcgg 243398
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 catctcgtcgagcgtctcgg 544 |||||||||||||||||||| Sbjct: 2318799 catctcgtcgagcgtctcgg 2318780
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 accatctcgtcgagcgtctc 542 |||||||||||||||||||| Sbjct: 29964640 accatctcgtcgagcgtctc 29964621
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ggcgaaggcggcgatgtcgg 191 |||||||||||||||||||| Sbjct: 2459049 ggcgaaggcggcgatgtcgg 2459068
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 accatctcgtcgagcgtctc 542 |||||||||||||||||||| Sbjct: 64916 accatctcgtcgagcgtctc 64897
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ggaaggcgaaggcggcgatg 187 |||||||||||||||||||| Sbjct: 4732375 ggaaggcgaaggcggcgatg 4732394
>gb|M35372.1|DROROUGHA Drosophila virilis rough gene Length = 7589 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 gtccagacgttgtcgcagaa 392 |||||||||||||||||||| Sbjct: 76 gtccagacgttgtcgcagaa 95 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,567,098 Number of Sequences: 3902068 Number of extensions: 3567098 Number of successful extensions: 62921 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62336 Number of HSP's gapped (non-prelim): 572 length of query: 585 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 562 effective length of database: 17,143,297,704 effective search space: 9634533309648 effective search space used: 9634533309648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)