>XYLT_ARATH (Q9LDH0) Beta-(1,2)-xylosyltransferase (EC 2.4.2.38)|
          Length = 534

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 313 KLVNSVDVMMGVHGAGLTNCVFLPQNATLIQIV 411
           + +    V++G HGAGLT+ V    N T+ +I+
Sbjct: 454 RAIQDASVIIGAHGAGLTHIVSATPNTTIFEII 486

>GCSP_YERPE (Q8ZHI8) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 958

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
 Frame = +1

Query: 88  MVDFNRFMRDAYSLPKETAAALGESPKVKPRLLIIKR-----HRTRMFL-------NLEE 231
           +++F +  +D   L   +A+ L E+      + + KR        R F+        L+ 
Sbjct: 126 LLNFQQLTQDLTGLDLASASLLDEATAAAESMALAKRASKLKDANRFFVADDVHPQTLDV 185

Query: 232 IIAMAEELGFEVVIDEANVSSDING-FAKLVNSVDVMMGVH 351
           ++  AE  GF+V++D A    +++G F  L+  V     +H
Sbjct: 186 VLTRAETFGFDVIVDRAEKVLELDGIFGVLLQQVGTTGELH 226

>HIS7_HAEIN (P44327) Histidine biosynthesis bifunctional protein hisB|
           [Includes: Histidinol-phosphatase (EC 3.1.3.15);
           Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
           (IGPD)]
          Length = 362

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 421 GLDWISRTDFGNPSEMMGLRYKQYAITVDESSLTDHYPRDHKIFKDP 561
           G D   +TDF  P  +M   ++   IT DE  +  H P ++ + + P
Sbjct: 58  GTDAFPQTDFDKPHNVMMALFESQGITFDEVLICPHKPEENCLCRKP 104

>GCSP_YERPS (Q666R7) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 959

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
 Frame = +1

Query: 88  MVDFNRFMRDAYSLPKETAAALGESPKVKPRLLIIKR-----HRTRMFL-------NLEE 231
           +++F +  +D   L   +A+ L E+      + + KR        R F+        L+ 
Sbjct: 127 LLNFQQLTQDLTGLDLASASLLDEATAAAESMALAKRASKLKDANRFFVADDVHPQTLDV 186

Query: 232 IIAMAEELGFEVVIDEANVSSDING-FAKLVNSVDVMMGVH 351
           ++  AE  GF+V++D A    +++G F  L+  V     +H
Sbjct: 187 VLTRAETFGFDVIVDRAEKVLELDGIFGVLLQQVGTTGELH 227

>PYRF_COREF (Q8FT43) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 280

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = +1

Query: 19  PSSARTPTWXFTIDASKSPHGVTMVDFNRFMRDAYSLPKETAAALGESPKVKPRLLIIKR 198
           P  +    W   +DA+       + +F+R   +A++   +T A       VKP++   +R
Sbjct: 25  PHESLLRAWGLPVDATG------LAEFSRICVEAFA---DTVAL------VKPQVAFYER 69

Query: 199 HRTRMFLNLEEIIAMAEELGFEVVID--EANVSSDINGFA 312
             +R F  LEE I    E G  VV D    ++ S + G+A
Sbjct: 70  FGSRGFAVLEETIGTLRERGCLVVSDAKRGDIGSTMAGYA 109

>TRMI_THET2 (Q8GBB2) tRNA (adenine-N(1)-)-methyltransferase (EC 2.1.1.36)|
           (tRNA(m1A58)-methyltransferase) (tRNA(m1A58)MTase)
          Length = 255

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 24/67 (35%), Positives = 32/67 (47%)
 Frame = -1

Query: 609 HEGAPDELEPSLVEGDGVLEDLMVPRVVIGEAALVDGDGVLLVPQAHHLRRVAEVGAGYP 430
           H G  +E E      DGV  DLM P  V+ +AAL       LV    ++ +V E+     
Sbjct: 150 HLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNITQVLEL----- 204

Query: 429 VQAAEGH 409
           V+AAE H
Sbjct: 205 VRAAEAH 211

>GPMI_STRCO (Q9L214) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 511

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
 Frame = -1

Query: 513 ALVDGDGVLLVPQAHHLRRVAE-------------VGAGYPVQAAEGHDLDERGVLRQED 373
           A+ DG  V       +L RVAE             +G GY +  A   DL ER V    D
Sbjct: 154 AITDGRDVADHTGEAYLTRVAELAAAAGTGQIATVIGRGYAMDKAGDLDLTERAVALVAD 213

Query: 372 AVGEPGAMHAHHHVHRVDKLGEAV 301
             G P A  AH  VH  ++  E V
Sbjct: 214 GRGSP-ADSAHSAVHSSERGDEWV 236

>XSC_ALCDF (Q84H44) Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15)|
          Length = 597

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 268 VIDEANVSSDINGFAKLVNSVDVMMGVHGAGLTNCV 375
           V+ E   +   +GFA++     V++G +G G++NCV
Sbjct: 57  VVHEQGAAHMADGFARVSGRTGVVIGQNGPGISNCV 92

>ATL4O_ARATH (Q8W571) RING-H2 finger protein ATL4O precursor|
          Length = 322

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = -1

Query: 552 EDLMVPRVVIGEAALVDGDGVLLVPQAHHLRRVAEVGAGYPVQAAEGHDLD------ERG 391
           ED  VP   + +  +VD + V  V ++HH R  +E+   +P   + GH +D      ER 
Sbjct: 178 EDDGVPLAAMRDHVVVDIETVE-VAKSHHRRLSSEISGKFPRSNSTGHSMDRFSDGTERF 236

Query: 390 VLRQEDAV 367
            LR  D V
Sbjct: 237 TLRLPDDV 244

>GLMS_ECOLI (P17169) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 608

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
 Frame = -1

Query: 504 DGDGVLLVPQAHHLRRVAEVGAGYPV-QAAEGHDLDE-RGVLRQEDAV-GEPGAMHAHHH 334
           D  G+ +V    H+ R+  +G    + QAAE H L    G+     A  GEP  ++AH H
Sbjct: 29  DSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPH 88

Query: 333 VHRVDKLGEAVDVGAHVGLVDHH--LESQLLGHG 238
           V       E + V  H G++++H  L  +L   G
Sbjct: 89  V------SEHI-VVVHNGIIENHEPLREELKARG 115

>GLMS_ECO57 (Q8XEG2) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 608

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
 Frame = -1

Query: 504 DGDGVLLVPQAHHLRRVAEVGAGYPV-QAAEGHDLDE-RGVLRQEDAV-GEPGAMHAHHH 334
           D  G+ +V    H+ R+  +G    + QAAE H L    G+     A  GEP  ++AH H
Sbjct: 29  DSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPH 88

Query: 333 VHRVDKLGEAVDVGAHVGLVDHH--LESQLLGHG 238
           V       E + V  H G++++H  L  +L   G
Sbjct: 89  V------SEHI-VVVHNGIIENHEPLREELKARG 115

>POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2301

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +1

Query: 4    TASXTPSSARTPTWXFTIDASKSPHGVT---MVDFNRFMRDAYSLPKETAAALGESPKVK 174
            T +  P+  R  T+ FT+ A   PH  T   M+D  +   +      + A    + P + 
Sbjct: 1414 TVAHYPAVDRRITFDFTVTAG--PHCTTSNGMLDIEKAFDEIPGSKPQLACFSADCPLLH 1471

Query: 175  PRLLIIKRHRTRMFLNLEEIIAMAEE 252
             R ++   +RT+   NL++++ M  +
Sbjct: 1472 KRGVMFTCNRTKAVYNLQQVVKMVND 1497

>ADD1_STRCO (O86737) Probable adenosine deaminase 1 (EC 3.5.4.4) (Adenosine|
           aminohydrolase 1)
          Length = 387

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +3

Query: 420 RPGLDIPHRLRQPVGDDGPAVQAVRHHRRREQP---HRSLPEGP*DLQGPHL-LPQARVR 587
           RP  D P    QP+    P  +A R  R  E+P   H   P+ P DL      LP+A + 
Sbjct: 2   RPAYDDPRTTDQPITRARPPPRAARGRRLGEEPLTEHLVDPDVPRDLHAFIAGLPKAELH 61

Query: 588 VH 593
           VH
Sbjct: 62  VH 63

>YIA2_RHISP (P17984) Insertion element ISR1 hypothetical 17 kDa protein A2|
          Length = 161

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 450 RQPVGDDGPAVQAVRHHRRREQPHRSLPEGP 542
           R  VG   PA +A RHHR+R++    L  GP
Sbjct: 16  RAGVGRRHPAARAARHHRQRQRHGVHLERGP 46

>POLG_TMEVG (P08545) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2303

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +1

Query: 4    TASXTPSSARTPTWXFTIDAS---KSPHGVTMVDFNRFMRDAYSLPKETAAALGESPKVK 174
            T +  P+  R  T+ FT+ A    K+P G  M+D  +   +      + A    + P + 
Sbjct: 1416 TVAHYPAVDRRITFDFTVTAGPHCKTPAG--MLDIEKAFDEIPGSKPQLACFSADCPLLH 1473

Query: 175  PRLLIIKRHRTRMFLNLEEIIAMAEE 252
             R ++   +RT+   NL++++ M  +
Sbjct: 1474 KRGVMFTCNRTKTVYNLQQVVKMVND 1499

>SYFA_METKA (Q8TYM5) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 524

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -1

Query: 465 LRRVAEVGAGYPVQAAEGHDLDERGVLRQEDAVGEPGAMHAHHHVHRVDKLGEAVDVGAH 286
           L  +AE G   P + AE  D+D   V+R    + E G + +    H V +LG+     A 
Sbjct: 18  LIHLAESGEATPEELAESLDVDLGPVMRSLYWLEERGLIESEEETHEVYELGDEGKEYAE 77

Query: 285 VGL 277
            GL
Sbjct: 78  EGL 80

>UXUA_HAEIN (P44488) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)|
          Length = 394

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +1

Query: 193 KRHRTRMFLNLEEIIAMAEELGFEVVIDEANVSSDINGFAKLVNSVDVM 339
           ++ RT +   L EI+ +A+E+G ++ I   +    I G  ++V++++ M
Sbjct: 206 EKFRTHLAYFLNEIVPVAQEIGIKMAIHPDDPPRPILGLPRIVSTIEDM 254

>DOIAD_STRFR (Q53U21) 2-deoxy-scyllo-inosamine dehydrogenase (EC 1.1.1.-) (DOIA|
           dehydrogenase)
          Length = 340

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = -1

Query: 531 VVIGEAALVDGDGVLLVPQAHHLRRVAEVGAGYPVQAAEGHDLDERGVLRQEDAVGEPGA 352
           +++ +A  + G  V  V +    RR A +  G P  AA G D      L + D    P  
Sbjct: 174 LLLVQAVRLRGGTVTAVAEPVPERRAAALALGVP--AAVGGDPGALVELTRSDPAAVPDV 231

Query: 351 -MHAHHHVHRVDKLGEAVDVGAHVGLVDHHLE 259
            + A  +   V +  EAV  G  VGLV + +E
Sbjct: 232 VLEASGYPTAVQEAVEAVRPGGRVGLVGYRIE 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,014,819
Number of Sequences: 219361
Number of extensions: 1638938
Number of successful extensions: 6578
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6567
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)