ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9i03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
2gb|AY105083.1| Zea mays PCO082395 mRNA sequence 153 9e-34
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
4dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
5dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
6dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
7gb|AC018483.11| Drosophila melanogaster clone BACR11B22, complet... 42 2.4
8gb|AC096577.3| Homo sapiens BAC clone RP11-556I14 from 4, comple... 42 2.4
9gb|AC010847.11|AC010847 Drosophila melanogaster, chromosome X, r... 42 2.4
10gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 ... 42 2.4
11gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 ... 42 2.4
12gb|CP000223.1| Drosophila melanogaster genomic scaffold 21100002... 42 2.4
13gb|CP000191.1| Drosophila melanogaster genomic scaffold 21100002... 42 2.4
14gb|CP000189.1| Drosophila melanogaster genomic scaffold 21100002... 42 2.4
15ref|XM_632519.1| Dictyostelium discoideum NAD-dependent deacetyl... 40 9.6
16ref|XM_529075.1| PREDICTED: Pan troglodytes similar to tyrosine ... 40 9.6
17gb|AC115047.19| Mus musculus chromosome 10, clone RP24-330D16, c... 40 9.6
18ref|XM_712415.1| Candida albicans SC5314 hypothetical protein (C... 40 9.6
19ref|XM_712321.1| Candida albicans SC5314 hypothetical protein (C... 40 9.6
20ref|XM_706315.1| Candida albicans SC5314 hypothetical protein (C... 40 9.6
21ref|NM_024885.2| Homo sapiens TAF7-like RNA polymerase II, TATA ... 40 9.6
22gb|AC103411.8| Rattus norvegicus 15 BAC CH230-7J23 (Children's H... 40 9.6
23gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome... 40 9.6
24ref|XM_664191.2| Plasmodium berghei strain ANKA hypothetical pro... 40 9.6
25emb|AL359835.10| Human DNA sequence from clone RP11-191J5 on chr... 40 9.6
26emb|AL121882.10|HSJ223D17 Human DNA sequence from clone RP1-223D... 40 9.6
27emb|AL109801.14|HSJ738A13 Human DNA sequence from clone RP4-738A... 40 9.6
28emb|AL078595.12|HSDJ399J4 Human DNA sequence from clone RP3-399J... 40 9.6
29gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 40 9.6
30emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 9.6
31emb|CR378666.1| Photobacterium profundum SS9; segment 4/12 40 9.6
32gb|BC043391.1| Homo sapiens TAF7-like RNA polymerase II, TATA bo... 40 9.6
33emb|BX664713.6| Zebrafish DNA sequence from clone DKEY-27N8 in l... 40 9.6
34gb|AC007110.3| Homo sapiens chromosome 6, clone hRPK.472_J_18, c... 40 9.6
35emb|BX537317.7| Zebrafish DNA sequence from clone DKEY-148L4 in ... 40 9.6
36gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, comp... 40 9.6
37gb|AC010698.7| Drosophila melanogaster 3L BAC RP98-15K18 (Roswel... 40 9.6
38gb|AC105263.2| Drosophila melanogaster 3L BAC RP98-48G3 (Roswell... 40 9.6
39gb|AC151296.4| Mus musculus BAC clone RP23-127M7 from chromosome... 40 9.6
40gb|AF285595.1|AF285595 Homo sapiens TBP-associated factor II Q (... 40 9.6
41gb|AC007904.6|AC007904 Drosophila melanogaster, chromosome 3R, r... 40 9.6
42dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 9.6
43dbj|AK026810.1| Homo sapiens cDNA: FLJ23157 fis, clone LNG09620 40 9.6
44gb|AE003703.3| Drosophila melanogaster chromosome 3R, section 41... 40 9.6
45gb|AE003543.4| Drosophila melanogaster chromosome 3L, section 42... 40 9.6
46emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chr... 40 9.6
47emb|AL591973.1| Listeria monocytogenes strain EGD, complete geno... 40 9.6
48gb|AC140318.4| Mus musculus BAC clone RP23-400F19 from 9, comple... 40 9.6
49gb|AC132400.3| Mus musculus BAC clone RP23-400A19 from 1, comple... 40 9.6
50gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 9.6
51dbj|AP006734.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 9.6
52dbj|AB162016.1| Lotus japonicus CASTOR gene for ion channel, com... 40 9.6
53gb|AC162921.3| Mus musculus BAC clone RP23-342H1 from chromosome... 40 9.6 
>dbj|AK069946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035A19, full
            insert sequence
          Length = 2508

 Score =  202 bits (102), Expect = 1e-48
 Identities = 202/234 (86%), Gaps = 1/234 (0%)
 Strand = Plus / Minus

                                                                        
Query: 453  atccattcagacagtaaggagttcacttcatcaggaacttcatcgtgcggagcatgacct 512
            ||||||||  |||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2132 atccattcgcacagcaaggagttcacttcatcaggaacttcatcatgtggagcatgacct 2073

                                                                        
Query: 513  gcatttaactccctaatctggaccttcctgcaatgctctctaagcatcgaaatgaatgac 572
            |||| || ||| ||||| |||||||| ||||||||||| |||||||| ||||  ||||||
Sbjct: 2072 gcatctagctctctaatatggaccttgctgcaatgctccctaagcatggaaacaaatgac 2013

                                                                        
Query: 573  tcagattttacaagcggatctttcattccctgaataactaagatgttccctccaaaagaa 632
            |  ||||||  ||| ||||||||||||||||||| || |||||| || || |||||||||
Sbjct: 2012 ttggattttgtaagtggatctttcattccctgaacaattaagatttttccaccaaaagaa 1953

                                                                  
Query: 633  tcgaatagaaaattaagaggaattgaaagatttgaagttgaatatgctctcaat 686
            || |||| ||| || |||||||| |||||| |||||  ||||||||||||||||
Sbjct: 1952 tcaaataaaaagttgagaggaatggaaaga-ttgaaactgaatatgctctcaat 1900
to top
>gb|AY105083.1| Zea mays PCO082395 mRNA sequence
          Length = 647

 Score =  153 bits (77), Expect = 9e-34
 Identities = 177/209 (84%), Gaps = 1/209 (0%)
 Strand = Plus / Minus

                                                                       
Query: 477 acttcatcaggaacttcatcgtgcggagcatgacctgcatttaactccctaatctggacc 536
           |||||||| ||||||||||| || ||||||||||||||||||||||| || || || |||
Sbjct: 472 acttcatctggaacttcatcatgtggagcatgacctgcatttaactctctgatttgaacc 413

                                                                       
Query: 537 ttcctgcaatgctctctaagcatcgaaatgaatgactcagattttacaagcggatctttc 596
           || |||||||| ||||  ||||| |  |  |||| ||||||||||  ||| || ||||||
Sbjct: 412 ttgctgcaatgttctcggagcatggtgacaaatgcctcagattttgtaagggggtctttc 353

                                                                       
Query: 597 attccctgaataactaagatgttccctccaaaagaatcgaatagaaaattaagaggaatt 656
           || ||||| |||||||| || ||||||||||||||||| ||||  || ||||||||||||
Sbjct: 352 ataccctggataactaatatcttccctccaaaagaatcaaataagaagttaagaggaatt 293

                                        
Query: 657 gaaagatttgaagttgaatatgctctcaa 685
           |||||| |||||||||||||  |||||||
Sbjct: 292 gaaaga-ttgaagttgaatacactctcaa 265



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 628 aagaatcgaatagaaaattaagaggaattgaaagatttgaagttgaatatgctctcaa 685
           ||||||| ||||  || |||||||||||||||||| |||||||||||||  |||||||
Sbjct: 142 aagaatcaaataagaagttaagaggaattgaaaga-ttgaagttgaatacactctcaa 86
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                            
Query: 453      atccattcagacagtaaggagttcacttcatcaggaacttcatcgtgcggagcatgacct 512
                ||||||||  |||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 20601532 atccattcgcacagcaaggagttcacttcatcaggaacttcatcatgtggagcatgacct 20601473

                 
Query: 513      g 513
                |
Sbjct: 20601472 g 20601472



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                            
Query: 509      acctgcatttaactccctaatctggaccttcctgcaatgctctctaagcatcgaaatgaa 568
                |||||||| || ||| ||||| |||||||| ||||||||||| |||||||| ||||  ||
Sbjct: 20601370 acctgcatctagctctctaatatggaccttgctgcaatgctccctaagcatggaaacaaa 20601311

                                                   
Query: 569      tgactcagattttacaagcggatctttcattccct 603
                |||||  ||||||  ||| ||||||||||||||||
Sbjct: 20601310 tgacttggattttgtaagtggatctttcattccct 20601276



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 73/86 (84%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                            
Query: 601      cctgaataactaagatgttccctccaaaagaatcgaatagaaaattaagaggaattgaaa 660
                |||||| || |||||| || || ||||||||||| |||| ||| || |||||||| ||||
Sbjct: 20601168 cctgaacaattaagatttttccaccaaaagaatcaaataaaaagttgagaggaatggaaa 20601109

                                          
Query: 661      gatttgaagttgaatatgctctcaat 686
                || |||||  ||||||||||||||||
Sbjct: 20601108 ga-ttgaaactgaatatgctctcaat 20601084



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 189      gttgctgtcgtggagtgctaatgctt 214
                ||||||||| ||||||||||||||||
Sbjct: 20607366 gttgctgtcatggagtgctaatgctt 20607341
to top
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1254_E07
          Length = 124028

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                          
Query: 453    atccattcagacagtaaggagttcacttcatcaggaacttcatcgtgcggagcatgacct 512
              ||||||||  |||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 119179 atccattcgcacagcaaggagttcacttcatcaggaacttcatcatgtggagcatgacct 119120

               
Query: 513    g 513
              |
Sbjct: 119119 g 119119



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                          
Query: 509    acctgcatttaactccctaatctggaccttcctgcaatgctctctaagcatcgaaatgaa 568
              |||||||| || ||| ||||| |||||||| ||||||||||| |||||||| ||||  ||
Sbjct: 119017 acctgcatctagctctctaatatggaccttgctgcaatgctccctaagcatggaaacaaa 118958

                                                 
Query: 569    tgactcagattttacaagcggatctttcattccct 603
              |||||  ||||||  ||| ||||||||||||||||
Sbjct: 118957 tgacttggattttgtaagtggatctttcattccct 118923



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 73/86 (84%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                          
Query: 601    cctgaataactaagatgttccctccaaaagaatcgaatagaaaattaagaggaattgaaa 660
              |||||| || |||||| || || ||||||||||| |||| ||| || |||||||| ||||
Sbjct: 118815 cctgaacaattaagatttttccaccaaaagaatcaaataaaaagttgagaggaatggaaa 118756

                                        
Query: 661    gatttgaagttgaatatgctctcaat 686
              || |||||  ||||||||||||||||
Sbjct: 118755 ga-ttgaaactgaatatgctctcaat 118731
to top
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0515E01
          Length = 140063

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 453   atccattcagacagtaaggagttcacttcatcaggaacttcatcgtgcggagcatgacct 512
             ||||||||  |||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 67190 atccattcgcacagcaaggagttcacttcatcaggaacttcatcatgtggagcatgacct 67131

              
Query: 513   g 513
             |
Sbjct: 67130 g 67130



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 509   acctgcatttaactccctaatctggaccttcctgcaatgctctctaagcatcgaaatgaa 568
             |||||||| || ||| ||||| |||||||| ||||||||||| |||||||| ||||  ||
Sbjct: 67028 acctgcatctagctctctaatatggaccttgctgcaatgctccctaagcatggaaacaaa 66969

                                                
Query: 569   tgactcagattttacaagcggatctttcattccct 603
             |||||  ||||||  ||| ||||||||||||||||
Sbjct: 66968 tgacttggattttgtaagtggatctttcattccct 66934



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 73/86 (84%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                         
Query: 601   cctgaataactaagatgttccctccaaaagaatcgaatagaaaattaagaggaattgaaa 660
             |||||| || |||||| || || ||||||||||| |||| ||| || |||||||| ||||
Sbjct: 66826 cctgaacaattaagatttttccaccaaaagaatcaaataaaaagttgagaggaatggaaa 66767

                                       
Query: 661   gatttgaagttgaatatgctctcaat 686
             || |||||  ||||||||||||||||
Sbjct: 66766 ga-ttgaaactgaatatgctctcaat 66742



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 189   gttgctgtcgtggagtgctaatgctt 214
             ||||||||| ||||||||||||||||
Sbjct: 73024 gttgctgtcatggagtgctaatgctt 72999
to top
>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
           BAC clone:OJ1112_E07
          Length = 132055

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 189 gttgctgtcgtggagtgctaatgctt 214
           ||||||||| ||||||||||||||||
Sbjct: 977 gttgctgtcatggagtgctaatgctt 952
to top
>gb|AC018483.11| Drosophila melanogaster clone BACR11B22, complete sequence
          Length = 176595

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 473   gttcacttcatcaggaacttc 493
             |||||||||||||||||||||
Sbjct: 58304 gttcacttcatcaggaacttc 58324
to top
>gb|AC096577.3| Homo sapiens BAC clone RP11-556I14 from 4, complete sequence
          Length = 156095

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 30/32 (93%), Gaps = 2/32 (6%)
 Strand = Plus / Minus

                                              
Query: 434    ttcagtcttgttcgttttcatccattcagaca 465
              ||||||||||||  ||||||||||||||||||
Sbjct: 128960 ttcagtcttgtt--ttttcatccattcagaca 128931
to top
>gb|AC010847.11|AC010847 Drosophila melanogaster, chromosome X, region 18D-18D, BAC clone
              BACR10M08, complete sequence
          Length = 180213

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 473    gttcacttcatcaggaacttc 493
              |||||||||||||||||||||
Sbjct: 138157 gttcacttcatcaggaacttc 138177
to top
>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete
              sequence
          Length = 585533

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 473    gttcacttcatcaggaacttc 493
              |||||||||||||||||||||
Sbjct: 486812 gttcacttcatcaggaacttc 486792
to top
>gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 of 74 of the complete
              sequence
          Length = 346474

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 473    gttcacttcatcaggaacttc 493
              |||||||||||||||||||||
Sbjct: 243923 gttcacttcatcaggaacttc 243943
to top
>gb|CP000223.1| Drosophila melanogaster genomic scaffold 211000022280790
          Length = 626829

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 473   gttcacttcatcaggaacttc 493
             |||||||||||||||||||||
Sbjct: 67567 gttcacttcatcaggaacttc 67587
to top
>gb|CP000191.1| Drosophila melanogaster genomic scaffold 211000022280172
          Length = 132906

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 473   gttcacttcatcaggaacttc 493
             |||||||||||||||||||||
Sbjct: 92348 gttcacttcatcaggaacttc 92328
to top
>gb|CP000189.1| Drosophila melanogaster genomic scaffold 211000022280229
          Length = 169547

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 473    gttcacttcatcaggaacttc 493
              |||||||||||||||||||||
Sbjct: 127238 gttcacttcatcaggaacttc 127258
to top
>ref|XM_632519.1| Dictyostelium discoideum NAD-dependent deacetylase (DDB0216432),
            partial mRNA
          Length = 2337

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 641  aaaattaagaggaattgaaagatt 664
            |||||||| |||||||||||||||
Sbjct: 1404 aaaattaaaaggaattgaaagatt 1427
to top
>ref|XM_529075.1| PREDICTED: Pan troglodytes similar to tyrosine kinase (LOC473702),
            mRNA
          Length = 2673

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 477  acttcatcaggaacttcatc 496
            ||||||||||||||||||||
Sbjct: 2096 acttcatcaggaacttcatc 2077
to top
>gb|AC115047.19| Mus musculus chromosome 10, clone RP24-330D16, complete sequence
          Length = 193923

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 635    gaatagaaaattaagaggaa 654
              ||||||||||||||||||||
Sbjct: 151348 gaatagaaaattaagaggaa 151367
to top
>ref|XM_712415.1| Candida albicans SC5314 hypothetical protein (CaO19_8186), mRNA
          Length = 1659

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gataaatgcaataatgatgtaatg 348
           ||||||||||||||||||| ||||
Sbjct: 236 gataaatgcaataatgatggaatg 213
to top
>ref|XM_712321.1| Candida albicans SC5314 hypothetical protein (CaO19_551), mRNA
          Length = 1659

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gataaatgcaataatgatgtaatg 348
           ||||||||||||||||||| ||||
Sbjct: 236 gataaatgcaataatgatggaatg 213
to top
>ref|XM_706315.1| Candida albicans SC5314 hypothetical protein (CaO19.6654), mRNA
          Length = 924

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 659 aagatttgaagttgaatatg 678
           ||||||||||||||||||||
Sbjct: 224 aagatttgaagttgaatatg 243
to top
>ref|NM_024885.2| Homo sapiens TAF7-like RNA polymerase II, TATA box binding protein
           (TBP)-associated factor, 50kDa (TAF7L), mRNA
          Length = 2357

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 477 acttcatcaggaacttcatc 496
           ||||||||||||||||||||
Sbjct: 305 acttcatcaggaacttcatc 286
to top
>gb|AC103411.8| Rattus norvegicus 15 BAC CH230-7J23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216935

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   acagtggagaggttgctgtc 197
             ||||||||||||||||||||
Sbjct: 23112 acagtggagaggttgctgtc 23131
to top
>gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome 1, complete sequence
          Length = 170885

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    taatgatgtaatgcatgctc 355
              ||||||||||||||||||||
Sbjct: 158629 taatgatgtaatgcatgctc 158648
to top
>ref|XM_664191.2| Plasmodium berghei strain ANKA hypothetical protein (PB300042.00.0)
           partial mRNA
          Length = 606

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 641 aaaattaagaggaattgaaa 660
           ||||||||||||||||||||
Sbjct: 534 aaaattaagaggaattgaaa 553
to top
>emb|AL359835.10| Human DNA sequence from clone RP11-191J5 on chromosome 1q31.1-31.3
              Contains STSs and GSSs, complete sequence
          Length = 172747

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 536    cttcctgcaatgctctctaa 555
              ||||||||||||||||||||
Sbjct: 104355 cttcctgcaatgctctctaa 104374
to top
>emb|AL121882.10|HSJ223D17 Human DNA sequence from clone RP1-223D17 on chromosome Xq13.2-21.1,
            complete sequence
          Length = 87791

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   cacatgaaagcaaaaaagag 106
            ||||||||||||||||||||
Sbjct: 3608 cacatgaaagcaaaaaagag 3627
to top
>emb|AL109801.14|HSJ738A13 Human DNA sequence from clone RP4-738A13 on chromosome Xq21.31-22.1
             Contains the 5' end of the TAF7L gene for TAF7-like RNA
             polymerase II 50kDa TATA box binding protein
             (TBP)-associated factor and a CpG island, complete
             sequence
          Length = 46775

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   acttcatcaggaacttcatc 496
             ||||||||||||||||||||
Sbjct: 15960 acttcatcaggaacttcatc 15979
to top
>emb|AL078595.12|HSDJ399J4 Human DNA sequence from clone RP3-399J4 on chromosome 6q15-16.3 Contains
              a cytochrome B pseudogene and a ribosomal protein (RPL7A)
              pseudogene, complete sequence
          Length = 124280

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 448    ttttcatccattcagacagt 467
              ||||||||||||||||||||
Sbjct: 123418 ttttcatccattcagacagt 123437
to top
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 659     aagatttgaagttgaatatgctct 682
               ||||||||||||||||||| ||||
Sbjct: 1343450 aagatttgaagttgaatattctct 1343427
to top
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    tgatatcactccggactcta 174
              ||||||||||||||||||||
Sbjct: 457500 tgatatcactccggactcta 457481
to top
>emb|CR378666.1| Photobacterium profundum SS9; segment 4/12
          Length = 348313

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     ctgaagattgcacatgaaag 96
              ||||||||||||||||||||
Sbjct: 249019 ctgaagattgcacatgaaag 249000
to top
>gb|BC043391.1| Homo sapiens TAF7-like RNA polymerase II, TATA box binding protein
           (TBP)-associated factor, 50kDa, mRNA (cDNA clone
           MGC:50682 IMAGE:6154641), complete cds
          Length = 2357

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 477 acttcatcaggaacttcatc 496
           ||||||||||||||||||||
Sbjct: 305 acttcatcaggaacttcatc 286
to top
>emb|BX664713.6| Zebrafish DNA sequence from clone DKEY-27N8 in linkage group 8,
             complete sequence
          Length = 126218

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   cttgttcgttttcatccatt 459
             ||||||||||||||||||||
Sbjct: 72721 cttgttcgttttcatccatt 72702
to top
>gb|AC007110.3| Homo sapiens chromosome 6, clone hRPK.472_J_18, complete sequence
          Length = 148336

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   ttttcatccattcagacagt 467
             ||||||||||||||||||||
Sbjct: 84692 ttttcatccattcagacagt 84673
to top
>emb|BX537317.7| Zebrafish DNA sequence from clone DKEY-148L4 in linkage group 8,
             complete sequence
          Length = 191141

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 440   cttgttcgttttcatccatt 459
             ||||||||||||||||||||
Sbjct: 32668 cttgttcgttttcatccatt 32687
to top
>gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, complete sequence
          Length = 256719

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     aaagcaaaaaagaggacaga 112
              ||||||||||||||||||||
Sbjct: 128634 aaagcaaaaaagaggacaga 128615
to top
>gb|AC010698.7| Drosophila melanogaster 3L BAC RP98-15K18 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 174631

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 626    aaaagaatcgaatagaaaat 645
              ||||||||||||||||||||
Sbjct: 160735 aaaagaatcgaatagaaaat 160754
to top
>gb|AC105263.2| Drosophila melanogaster 3L BAC RP98-48G3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 153440

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 626    aaaagaatcgaatagaaaat 645
              ||||||||||||||||||||
Sbjct: 125635 aaaagaatcgaatagaaaat 125616
to top
>gb|AC151296.4| Mus musculus BAC clone RP23-127M7 from chromosome 8, complete sequence
          Length = 210633

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tgtatcatgagtgactctga 145
             ||||||||||||||||||||
Sbjct: 79214 tgtatcatgagtgactctga 79233
to top
>gb|AF285595.1|AF285595 Homo sapiens TBP-associated factor II Q (TAF2Q) mRNA, complete cds
          Length = 1576

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 477 acttcatcaggaacttcatc 496
           ||||||||||||||||||||
Sbjct: 153 acttcatcaggaacttcatc 134
to top
>gb|AC007904.6|AC007904 Drosophila melanogaster, chromosome 3R, region 88B-88B, BAC clone
              BACR01H04, complete sequence
          Length = 190325

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    tcgataaatgcaataatgat 342
              ||||||||||||||||||||
Sbjct: 128586 tcgataaatgcaataatgat 128567
to top
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    tgatatcactccggactcta 174
              ||||||||||||||||||||
Sbjct: 510928 tgatatcactccggactcta 510909
to top
>dbj|AK026810.1| Homo sapiens cDNA: FLJ23157 fis, clone LNG09620
          Length = 2144

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 477 acttcatcaggaacttcatc 496
           ||||||||||||||||||||
Sbjct: 297 acttcatcaggaacttcatc 278
to top
>gb|AE003703.3| Drosophila melanogaster chromosome 3R, section 41 of 118 of the complete
              sequence
          Length = 223948

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    tcgataaatgcaataatgat 342
              ||||||||||||||||||||
Sbjct: 212207 tcgataaatgcaataatgat 212188
to top
>gb|AE003543.4| Drosophila melanogaster chromosome 3L, section 42 of 83 of the complete
              sequence
          Length = 276132

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 626    aaaagaatcgaatagaaaat 645
              ||||||||||||||||||||
Sbjct: 111681 aaaagaatcgaatagaaaat 111662
to top
>emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chromosome 2, complete
              sequence
          Length = 187665

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 636    aatagaaaattaagaggaat 655
              ||||||||||||||||||||
Sbjct: 123721 aatagaaaattaagaggaat 123740
to top
>emb|AL591973.1| Listeria monocytogenes strain EGD, complete genome, segment 1/12
          Length = 200050

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 175   agaacagtggagaggttgctgtcg 198
             |||| |||||||||||||||||||
Sbjct: 98784 agaaaagtggagaggttgctgtcg 98761
to top
>gb|AC140318.4| Mus musculus BAC clone RP23-400F19 from 9, complete sequence
          Length = 180211

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 649   gaggaattgaaagatttgaa 668
             ||||||||||||||||||||
Sbjct: 99221 gaggaattgaaagatttgaa 99202
to top
>gb|AC132400.3| Mus musculus BAC clone RP23-400A19 from 1, complete sequence
          Length = 218935

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   taatgatgtaatgcatgctc 355
             ||||||||||||||||||||
Sbjct: 64622 taatgatgtaatgcatgctc 64641
to top
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 175    agaacagtggagaggttgctgtcg 198
              |||| |||||||||||||||||||
Sbjct: 108932 agaaaagtggagaggttgctgtcg 108909
to top
>dbj|AP006734.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02K14, TM0918c,
             complete sequence
          Length = 26540

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 635   gaatagaaaattaagaggaa 654
             ||||||||||||||||||||
Sbjct: 20180 gaatagaaaattaagaggaa 20199
to top
>dbj|AB162016.1| Lotus japonicus CASTOR gene for ion channel, complete cds
          Length = 17000

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 635  gaatagaaaattaagaggaa 654
            ||||||||||||||||||||
Sbjct: 9025 gaatagaaaattaagaggaa 9044
to top
>gb|AC162921.3| Mus musculus BAC clone RP23-342H1 from chromosome 9, complete sequence
          Length = 254666

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 649   gaggaattgaaagatttgaa 668
             ||||||||||||||||||||
Sbjct: 24099 gaggaattgaaagatttgaa 24118


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,996,891
Number of Sequences: 3902068
Number of extensions: 5996891
Number of successful extensions: 118093
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 117857
Number of HSP's gapped (non-prelim): 230
length of query: 699
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 676
effective length of database: 17,143,297,704
effective search space: 11588869247904
effective search space used: 11588869247904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top