| Clone Name | bags12k01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK106255.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E10, full insert sequence Length = 1343 Score = 396 bits (200), Expect = e-107 Identities = 330/372 (88%), Gaps = 1/372 (0%) Strand = Plus / Plus Query: 3 ttgcttgagtatgcgcttgtttatggggaatataaggggattcccaagcagcagatccgc 62 ||||| ||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct: 568 ttgctcgagtacgcacttgtctatggggagtataaggggatccccaagcagcagatccgt 627 Query: 63 gattacatggccaaaggtcatgacattgtcttgagggtggatattcaaggtagcagcaac 122 ||||||||||| |||||| |||| ||||||||||| ||||| |||||||| ||||||||| Sbjct: 628 gattacatggcgaaaggttatgatattgtcttgagagtggacattcaagg-agcagcaac 686 Query: 123 tttgagagagatacttggcgaatctgcaattttcatctttctagttgcagagagcgagga 182 ||||||||||| ||||||||||| ||||| ||||||||| | ||||||||||| || || Sbjct: 687 cttgagagagattcttggcgaatcagcaatcttcatctttttggttgcagagagtgaaga 746 Query: 183 ggcacttgtcaaaaggctcattcaccgtaaaactgaaacgacagacatgcttcttgtcag 242 |||||||||||||||||| |||||||| ||||| ||||| |||| |||||||||||||| Sbjct: 747 ggcacttgtcaaaaggctaattcaccgcaaaacagaaacatcagatatgcttcttgtcag 806 Query: 243 aattgcaacagccagagaggaggtgagacggatgaaatattttgactacgtagttgtcaa 302 | ||||||| |||||||| ||||||| ||| ||||| ||||||| || ||||||||||| Sbjct: 807 agttgcaacggccagagaagaggtgaaacgcatgaacaattttgattatgtagttgtcaa 866 Query: 303 tgctgaagggaagcttgaggatgctgttaaacaggtggagtctatcattgatgctgagaa 362 | |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 867 ttctgaagggaatcttgagggggctgttaaacaggtggagtctatcattgatgctgagaa 926 Query: 363 ggcaaaagtcca 374 ||| || ||||| Sbjct: 927 ggctaaggtcca 938
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 351 bits (177), Expect = 1e-93 Identities = 286/321 (89%), Gaps = 1/321 (0%) Strand = Plus / Plus Query: 54 cagatccgcgattacatggccaaaggtcatgacattgtcttgagggtggatattcaaggt 113 |||||||| ||||||||||| |||||| |||| ||||||||||| ||||| |||||||| Sbjct: 11571458 cagatccgtgattacatggcgaaaggttatgatattgtcttgagagtggacattcaagg- 11571516 Query: 114 agcagcaactttgagagagatacttggcgaatctgcaattttcatctttctagttgcaga 173 ||||||||| ||||||||||| ||||||||||| ||||||||||||||| | |||||||| Sbjct: 11571517 agcagcaaccttgagagagattcttggcgaatcagcaattttcatctttttggttgcaga 11571576 Query: 174 gagcgaggaggcacttgtcaaaaggctcattcaccgtaaaactgaaacgacagacatgct 233 ||| || |||||||||||||||||||| |||||||| ||||| ||||| |||| ||||| Sbjct: 11571577 gagtgaagaggcacttgtcaaaaggctaattcaccgcaaaacagaaacatcagatatgct 11571636 Query: 234 tcttgtcagaattgcaacagccagagaggaggtgagacggatgaaatattttgactacgt 293 |||||||||| ||||||| |||||||| ||||||| ||| ||||| ||||||| || || Sbjct: 11571637 tcttgtcagagttgcaacggccagagaagaggtgaaacgcatgaacaattttgattatgt 11571696 Query: 294 agttgtcaatgctgaagggaagcttgaggatgctgttaaacaggtggagtctatcattga 353 |||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct: 11571697 agttgtcaattctgaagggaatcttgagggggctgttaaacaggtggagtctatcattga 11571756 Query: 354 tgctgagaaggcaaaagtcca 374 |||||||||||| || ||||| Sbjct: 11571757 tgctgagaaggctaaggtcca 11571777 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 3 ttgcttgagtatgcgcttgtttatggggaatataaggggattcccaagcagcag 56 ||||| ||||| || ||||| |||||||| ||||||||||| |||||||||||| Sbjct: 11569338 ttgctcgagtacgcacttgtctatggggagtataaggggatccccaagcagcag 11569391
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042L15, from chromosome 3, complete sequence Length = 172475 Score = 351 bits (177), Expect = 1e-93 Identities = 286/321 (89%), Gaps = 1/321 (0%) Strand = Plus / Plus Query: 54 cagatccgcgattacatggccaaaggtcatgacattgtcttgagggtggatattcaaggt 113 |||||||| ||||||||||| |||||| |||| ||||||||||| ||||| |||||||| Sbjct: 122030 cagatccgtgattacatggcgaaaggttatgatattgtcttgagagtggacattcaagg- 122088 Query: 114 agcagcaactttgagagagatacttggcgaatctgcaattttcatctttctagttgcaga 173 ||||||||| ||||||||||| ||||||||||| ||||||||||||||| | |||||||| Sbjct: 122089 agcagcaaccttgagagagattcttggcgaatcagcaattttcatctttttggttgcaga 122148 Query: 174 gagcgaggaggcacttgtcaaaaggctcattcaccgtaaaactgaaacgacagacatgct 233 ||| || |||||||||||||||||||| |||||||| ||||| ||||| |||| ||||| Sbjct: 122149 gagtgaagaggcacttgtcaaaaggctaattcaccgcaaaacagaaacatcagatatgct 122208 Query: 234 tcttgtcagaattgcaacagccagagaggaggtgagacggatgaaatattttgactacgt 293 |||||||||| ||||||| |||||||| ||||||| ||| ||||| ||||||| || || Sbjct: 122209 tcttgtcagagttgcaacggccagagaagaggtgaaacgcatgaacaattttgattatgt 122268 Query: 294 agttgtcaatgctgaagggaagcttgaggatgctgttaaacaggtggagtctatcattga 353 |||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct: 122269 agttgtcaattctgaagggaatcttgagggggctgttaaacaggtggagtctatcattga 122328 Query: 354 tgctgagaaggcaaaagtcca 374 |||||||||||| || ||||| Sbjct: 122329 tgctgagaaggctaaggtcca 122349 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 3 ttgcttgagtatgcgcttgtttatggggaatataaggggattcccaagcagcag 56 ||||| ||||| || ||||| |||||||| ||||||||||| |||||||||||| Sbjct: 119910 ttgctcgagtacgcacttgtctatggggagtataaggggatccccaagcagcag 119963
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 351 bits (177), Expect = 1e-93 Identities = 286/321 (89%), Gaps = 1/321 (0%) Strand = Plus / Plus Query: 54 cagatccgcgattacatggccaaaggtcatgacattgtcttgagggtggatattcaaggt 113 |||||||| ||||||||||| |||||| |||| ||||||||||| ||||| |||||||| Sbjct: 11568221 cagatccgtgattacatggcgaaaggttatgatattgtcttgagagtggacattcaagg- 11568279 Query: 114 agcagcaactttgagagagatacttggcgaatctgcaattttcatctttctagttgcaga 173 ||||||||| ||||||||||| ||||||||||| ||||||||||||||| | |||||||| Sbjct: 11568280 agcagcaaccttgagagagattcttggcgaatcagcaattttcatctttttggttgcaga 11568339 Query: 174 gagcgaggaggcacttgtcaaaaggctcattcaccgtaaaactgaaacgacagacatgct 233 ||| || |||||||||||||||||||| |||||||| ||||| ||||| |||| ||||| Sbjct: 11568340 gagtgaagaggcacttgtcaaaaggctaattcaccgcaaaacagaaacatcagatatgct 11568399 Query: 234 tcttgtcagaattgcaacagccagagaggaggtgagacggatgaaatattttgactacgt 293 |||||||||| ||||||| |||||||| ||||||| ||| ||||| ||||||| || || Sbjct: 11568400 tcttgtcagagttgcaacggccagagaagaggtgaaacgcatgaacaattttgattatgt 11568459 Query: 294 agttgtcaatgctgaagggaagcttgaggatgctgttaaacaggtggagtctatcattga 353 |||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct: 11568460 agttgtcaattctgaagggaatcttgagggggctgttaaacaggtggagtctatcattga 11568519 Query: 354 tgctgagaaggcaaaagtcca 374 |||||||||||| || ||||| Sbjct: 11568520 tgctgagaaggctaaggtcca 11568540 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 3 ttgcttgagtatgcgcttgtttatggggaatataaggggattcccaagcagcag 56 ||||| ||||| || ||||| |||||||| ||||||||||| |||||||||||| Sbjct: 11566101 ttgctcgagtacgcacttgtctatggggagtataaggggatccccaagcagcag 11566154
>gb|AC124960.26| Medicago truncatula clone mth2-26j24, complete sequence Length = 125894 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 281 attttgactacgtagttgtcaatgctgaagggaagcttgaggatgctgttaaacaggtgg 340 ||||||| || || || ||||||||| | || ||||||||| ||||||| ||| | ||| Sbjct: 118872 attttgattatgttgtggtcaatgctaagggtaagcttgagaatgctgtgaaattgttgg 118931 Query: 341 agtctatcattgatgctgagaa 362 ||||||| |||||||||||||| Sbjct: 118932 agtctattattgatgctgagaa 118953
>emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chromosome 4, complete sequence Length = 123244 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 79 gtcatgacattgtcttgagggtggat 104 ||||||||| |||||||||||||||| Sbjct: 116472 gtcatgacactgtcttgagggtggat 116497
>ref|NM_111495.2| Arabidopsis thaliana guanylate kinase AT3G06200 mRNA, complete cds Length = 1225 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 18 cttgtttatggggaatataaggggattcccaagcagcagat 58 ||||||||||| ||||| || |||||||| ||| ||||||| Sbjct: 556 cttgtttatggagaatacaaagggattccaaagaagcagat 596
>gb|AY317098.1| Foot-and-mouth disease virus HKN/2002, complete genome Length = 8104 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 gaaggcaaaagtccagaagcg 380 ||||||||||||||||||||| Sbjct: 1618 gaaggcaaaagtccagaagcg 1638
>gb|AC149058.7| Mus musculus BAC clone RP23-338G5 from chromosome 7, complete sequence Length = 219369 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cagagagcgaggaggcacttg 190 ||||||||||||||||||||| Sbjct: 144205 cagagagcgaggaggcacttg 144225
>gb|AC018907.5|ATAC018907 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence Length = 93478 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 18 cttgtttatggggaatataaggggattcccaagcagcagat 58 ||||||||||| ||||| || |||||||| ||| ||||||| Sbjct: 44342 cttgtttatggagaatacaaagggattccaaagaagcagat 44382
>gb|AF446862.1|AF446862 Arabidopsis thaliana AT3g06200/F28L1_14 mRNA, complete cds Length = 849 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 18 cttgtttatggggaatataaggggattcccaagcagcagat 58 ||||||||||| ||||| || |||||||| ||| ||||||| Sbjct: 472 cttgtttatggagaatacaaagggattccaaagaagcagat 512
>gb|AF378877.1|AF378877 Arabidopsis thaliana AT3g06200/F28L1_14 mRNA, complete cds Length = 1209 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 18 cttgtttatggggaatataaggggattcccaagcagcagat 58 ||||||||||| ||||| || |||||||| ||| ||||||| Sbjct: 555 cttgtttatggagaatacaaagggattccaaagaagcagat 595
>emb|BX294131.7| Zebrafish DNA sequence from clone CH211-254O18, complete sequence Length = 164141 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 253 gccagagaggaggtgagacgg 273 ||||||||||||||||||||| Sbjct: 90149 gccagagaggaggtgagacgg 90169
>emb|AL713987.7| Zebrafish DNA sequence from clone BUSM1-145B16 in linkage group 9, complete sequence Length = 113891 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 ctgcaattttcatctttctagttgc 170 ||||| ||||||||||||||||||| Sbjct: 11741 ctgcagttttcatctttctagttgc 11765
>gb|AC109305.6| Mus musculus chromosome 1, clone RP24-350F5, complete sequence Length = 184088 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tctgcaattttcatctttct 164 |||||||||||||||||||| Sbjct: 32159 tctgcaattttcatctttct 32178
>gb|U00065.1| Caenorhabditis elegans cosmid D1044, complete sequence Length = 40301 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 atctgcaattttcatctttc 163 |||||||||||||||||||| Sbjct: 16626 atctgcaattttcatctttc 16645
>emb|CR450794.8| Zebrafish DNA sequence from clone CH211-259I2 in linkage group 14, complete sequence Length = 176875 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 agcagcaactttgagagaga 133 |||||||||||||||||||| Sbjct: 37094 agcagcaactttgagagaga 37075
>gb|AC121575.4| Mus musculus BAC clone RP23-241P4 from 1, complete sequence Length = 193725 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tctgcaattttcatctttct 164 |||||||||||||||||||| Sbjct: 61245 tctgcaattttcatctttct 61264
>gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete sequence Length = 127018 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 aagggaagcttgaggatgctgtta 331 |||| ||||||||||||||||||| Sbjct: 48694 aaggaaagcttgaggatgctgtta 48671
>gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete sequence Length = 125303 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 aagggaagcttgaggatgctgtta 331 |||| ||||||||||||||||||| Sbjct: 78324 aaggaaagcttgaggatgctgtta 78347
>emb|AL121952.18|HSDJ472M2 Human DNA sequence from clone RP3-472M2 on chromosome 6q25.1-26 Contains the 3' end of the gene for KIAA1116 and a ribosomal protein L17 (60S ribosomal protein L17) (RPL17)(rpL17) pseudogene, complete sequence Length = 107506 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 ttcaaggtagcagcaactttgaga 129 ||||||||| |||||||||||||| Sbjct: 69495 ttcaaggtaacagcaactttgaga 69472
>gb|AC097356.2| Homo sapiens chromosome 3 clone RP11-107K23, complete sequence Length = 147267 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gccagagaggaggtgagacg 272 |||||||||||||||||||| Sbjct: 61027 gccagagaggaggtgagacg 61046
>gb|AC142129.4| Rattus norvegicus BAC CH230-183M21 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 215272 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 aaaggtcatgacattgtcttgagg 98 ||||||||||||||||||| |||| Sbjct: 91589 aaaggtcatgacattgtctggagg 91612
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aagcttgaggatgctgttaa 332 |||||||||||||||||||| Sbjct: 8813770 aagcttgaggatgctgttaa 8813751
>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0613F08 Length = 142937 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aagcttgaggatgctgttaa 332 |||||||||||||||||||| Sbjct: 18788 aagcttgaggatgctgttaa 18769
>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052K15 Length = 156250 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aagcttgaggatgctgttaa 332 |||||||||||||||||||| Sbjct: 112849 aagcttgaggatgctgttaa 112830 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,662,360 Number of Sequences: 3902068 Number of extensions: 3662360 Number of successful extensions: 83136 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83048 Number of HSP's gapped (non-prelim): 84 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)