ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12j22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (... 80 3e-13
2dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRN... 50 3e-04
3dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 3e-04
4dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 3e-04
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.018
6gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 44 0.018
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.018
8emb|AL445164.14| Human DNA sequence from clone RP4-736G20 on chr... 36 4.4
9emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encep... 36 4.4

>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA,
           complete cds
          Length = 1433

 Score = 79.8 bits (40), Expect = 3e-13
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 1   agtaacttcattgctcaggccatacgtggtgaagccctga 40
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agtaacttcattgctcaggccatacgtggtgaagccctga 775



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>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for
           UDP-glucuronic acid decarboxylase, complete cds
          Length = 1053

 Score = 50.1 bits (25), Expect = 3e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 1   agtaacttcattgctcaggccatacgtgg 29
           ||||||||||||||||||||| |||||||
Sbjct: 664 agtaacttcattgctcaggccgtacgtgg 692



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>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full
            insert sequence
          Length = 1811

 Score = 50.1 bits (25), Expect = 3e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 1    agtaacttcattgctcaggccatacgtgg 29
            ||||||||||||||||||||| |||||||
Sbjct: 1152 agtaacttcattgctcaggccgtacgtgg 1180



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>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full
           insert sequence
          Length = 1411

 Score = 50.1 bits (25), Expect = 3e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 1   agtaacttcattgctcaggccatacgtgg 29
           ||||||||||||||||||||| |||||||
Sbjct: 763 agtaacttcattgctcaggccgtacgtgg 791



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.018
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 1       agtaacttcattgctcaggccatacg 26
               ||||||||||||||||||||| ||||
Sbjct: 9411514 agtaacttcattgctcaggccgtacg 9411539



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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 44.1 bits (22), Expect = 0.018
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 1      agtaacttcattgctcaggccatacg 26
              ||||||||||||||||||||| ||||
Sbjct: 108914 agtaacttcattgctcaggccgtacg 108939



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.018
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 1       agtaacttcattgctcaggccatacg 26
               ||||||||||||||||||||| ||||
Sbjct: 9409635 agtaacttcattgctcaggccgtacg 9409660



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>emb|AL445164.14| Human DNA sequence from clone RP4-736G20 on chromosome Xq23-24 Contains
             part of a novel gene (KIAA1495), complete sequence
          Length = 31200

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 4     aacttcattgctcaggccatac 25
             ||||||||||||||| ||||||
Sbjct: 10121 aacttcattgctcagtccatac 10142



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>emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 238147

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 17     aggccatacgtggtgaag 34
              ||||||||||||||||||
Sbjct: 145351 aggccatacgtggtgaag 145368


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 213,585
Number of Sequences: 3902068
Number of extensions: 213585
Number of successful extensions: 48960
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48927
Number of HSP's gapped (non-prelim): 33
length of query: 40
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 20
effective length of database: 17,155,003,908
effective search space: 343100078160
effective search space used: 343100078160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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