ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags12j19 |
|---|---|
| Clone Library Name | barley_pub |
>Y443_METJA (Q57885) Hypothetical protein MJ0443| Length = 227 Score = 42.7 bits (99), Expect = 7e-04 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 2/112 (1%) Frame = +1 Query: 190 KCADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLS--RAIGRLSGKGGK 363 K D V A GF+ +AL + D YV E+ D++ S R GR+ GK GK Sbjct: 72 KARDIVRAIGRGFN--PEIALKLVSDEYV--LEVIDIEDYASSDNSIRRLKGRVIGKEGK 127 Query: 364 TKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKL 519 ++ IE+ T + + + I+G +++A++++ L+ G+ K Y L Sbjct: 128 SRRYIESLTGANVSVYGNTVAIVGEHEPVQIAKEAVEMLLRGASHAKTYKFL 179
>SEY1_ASHGO (Q74ZD5) Protein SEY1| Length = 791 Score = 36.2 bits (82), Expect = 0.063 Identities = 24/72 (33%), Positives = 39/72 (54%) Frame = +1 Query: 67 AWLDIYTPVYEHMKVDIRMNLKAKRVELKTRHDTPDVSNLQKCADFVHAFMLGFDIADGV 246 AW +Y +++++K D +++ +R E K R+D DV L K + V A GF +A Sbjct: 549 AWTILYDIIHQYLKEDNVVSILRERFESKFRYDQNDVPRLWKNEEEVDA---GFKVAREH 605 Query: 247 ALLRLDDLYVDS 282 AL L+ L + S Sbjct: 606 ALNMLNTLSIAS 617
>DNAK_PSESM (Q87WP0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 33.5 bits (75), Expect = 0.41 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +1 Query: 253 LRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 432 +RL D +VD F+ + +L+G+ L A+ RL K K + +ST+T + + Sbjct: 234 IRLIDYFVDEFKKESGMSLKGDPL--AMQRLKEAAEKAKIELSSSTQTEVNLPYITADAT 291 Query: 433 G-SFVNIKVARDSLCSLI 483 G + +K++R L SL+ Sbjct: 292 GPKHLVVKISRSKLESLV 309
>SEY1_CANGA (Q6FLC5) Protein SEY1| Length = 783 Score = 33.1 bits (74), Expect = 0.53 Identities = 24/68 (35%), Positives = 35/68 (51%) Frame = +1 Query: 67 AWLDIYTPVYEHMKVDIRMNLKAKRVELKTRHDTPDVSNLQKCADFVHAFMLGFDIADGV 246 AW + T V++++K D ++L R E K R+D+ DV L K D + F +A Sbjct: 538 AWTLLETVVHDYLKEDTIVSLLRDRFESKFRYDSNDVPRLWKNEDEIDQ---SFRVAKEH 594 Query: 247 ALLRLDDL 270 AL LD L Sbjct: 595 ALEILDIL 602
>DNAK_PSEU2 (Q4ZNP7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 33.1 bits (74), Expect = 0.53 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +1 Query: 253 LRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 432 +RL D +VD F+ + L+G+ L A+ RL K K + +ST+T + + Sbjct: 234 IRLIDYFVDEFKKESGMNLKGDPL--AMQRLKEAAEKAKIELSSSTQTEVNLPYITADAT 291 Query: 433 G-SFVNIKVARDSLCSLI 483 G + +K++R L SL+ Sbjct: 292 GPKHLVVKISRSKLESLV 309
>DNAK_PSE14 (Q48E62) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 33.1 bits (74), Expect = 0.53 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +1 Query: 253 LRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 432 +RL D +VD F+ + L+G+ L A+ RL K K + +ST+T + + Sbjct: 234 IRLIDYFVDEFKKESGMNLKGDPL--AMQRLKEAAEKAKIELSSSTQTEVNLPYITADAT 291 Query: 433 G-SFVNIKVARDSLCSLI 483 G + +K++R L SL+ Sbjct: 292 GPKHLVVKISRSKLESLV 309
>COAT3_MIMIV (Q5UQN7) Probable capsid protein 3| Length = 2156 Score = 32.7 bits (73), Expect = 0.69 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Frame = +1 Query: 70 WLDIYTPVYEHMKVD------IRMNLKAKRVELKTRHDTPDVSNLQKCADFVHAFMLGFD 231 +L+I E+MK+ I+ + K + +K + D SN+QK D +H + FD Sbjct: 1769 FLNIINHTIENMKIPEIPDKLIKYCEQIKSMYIKHSDEIFDQSNIQKIRDNLHILKINFD 1828 Query: 232 IADGVALLRL 261 I D LL++ Sbjct: 1829 ITDKQLLLQM 1838
>XPP_YEAST (Q07825) Putative Xaa-Pro aminopeptidase (EC 3.4.11.9)| Length = 749 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 10/50 (20%) Frame = -2 Query: 199 PHTSEGCSHLVYH----------ALFSTQPFLP*GSCGCRPSCARRQGCR 80 P TS+G +H + H A S +PF P C C P RQG R Sbjct: 5 PSTSDGRAHSISHVPGTHMRGTSASHSPRPFRPCADCTCSPGLLSRQGRR 54
>Y078_NANEQ (Q74MJ0) UPF0027 protein NEQ078| Length = 477 Score = 32.0 bits (71), Expect = 1.2 Identities = 23/54 (42%), Positives = 31/54 (57%) Frame = +1 Query: 220 LGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIE 381 +GFDI GV LLR + L +D EIKD L + R + G+GGK K +I+ Sbjct: 91 VGFDINCGVRLLRTN-LTID--EIKDRLNLLVNEIFRNVPAGVGEGGKLKLSID 141
>NU124_SCHPO (Q09904) Nucleoporin nup124 (Nuclear pore protein nup124)| Length = 1159 Score = 31.2 bits (69), Expect = 2.0 Identities = 19/53 (35%), Positives = 32/53 (60%) Frame = -1 Query: 347 DRRPMARDRCSPRSVFTSLISKESTYRSSRRSKATPSAMSNPSIKACTKSAHF 189 + +P+++D +P+S F+S +KEST +R+S+ P PS KS+HF Sbjct: 431 EHQPLSKDTEAPKSQFSSSPTKEST---TRKSEVEP-----PSPSKEIKSSHF 475
>SOC1_ARATH (O64645) SUPPRESSOR OF CONSTANS OVEREXPRESSION 1 protein| (Agamous-like MADS-box protein AGL20) Length = 214 Score = 30.8 bits (68), Expect = 2.6 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +1 Query: 358 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVY 510 GKT+ IEN+T ++ + + +L + V D+ SLI+ SP GK+Y Sbjct: 4 GKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLY 55
>CBIO2_SULSO (Q97WT4) Putative cobalt import ATP-binding protein cbiO 2| Length = 530 Score = 30.4 bits (67), Expect = 3.4 Identities = 22/78 (28%), Positives = 39/78 (50%) Frame = +1 Query: 196 ADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYA 375 ADF+++ LG +I D + L+ + F D + LR + R R+ GKG + Sbjct: 234 ADFLYS--LGLEIPDYMLFLKKN-----GFRKIDYEYLRKTYTYRPPSRIGGKGEALYAS 286 Query: 376 IENSTRTRIVIADTKIHI 429 ++ T+ I + +TKI + Sbjct: 287 VKVKTKNGIYLINTKISL 304
>END4_SHIFL (Q83QW6) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 285 Score = 30.0 bits (66), Expect = 4.5 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = +1 Query: 172 DVSNLQKCADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLSRA 333 D S + C D HAF G+D+ + + D I K LRG HL+ A Sbjct: 170 DKSRVGVCIDTCHAFAAGYDLRTPA---ECEKTFADFARIVGFKYLRGMHLNDA 220
>END4_ECOL6 (Q8FFU0) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 285 Score = 30.0 bits (66), Expect = 4.5 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = +1 Query: 172 DVSNLQKCADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLSRA 333 D S + C D HAF G+D+ + + D I K LRG HL+ A Sbjct: 170 DKSRVGVCIDTCHAFAAGYDLRTPA---ECEKTFADFARIVGFKYLRGMHLNDA 220
>PI51C_HUMAN (O60331) Phosphatidylinositol-4-phosphate 5-kinase type-1 gamma (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type I gamma) (PtdIns(4)P-5-kinase gamma) (PtdInsPKIgamma) (PIP5KIgamma) Length = 668 Score = 30.0 bits (66), Expect = 4.5 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +1 Query: 100 HMKVDIRMNLKAKRVELKTRHDT-PDVSNLQKCADFVHAFMLGFDIADG-VALLRLDDLY 273 H+K D++ + +R K + + P +L D +L D V L+ D L Sbjct: 249 HLKFDLKGSTYKRRASKKEKEKSFPTYKDLDFMQDMPEGLLLDADTFSALVKTLQRDCLV 308 Query: 274 VDSFEIKDVKTLRGEH 321 ++SF+I D L G H Sbjct: 309 LESFKIMDYSLLLGVH 324
>PI51C_RAT (Q5I6B8) Phosphatidylinositol-4-phosphate 5-kinase type-1 gamma (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type I gamma) (PtdIns(4)P-5-kinase gamma) (PtdInsPKIgamma) (PIP5KIgamma) Length = 688 Score = 29.6 bits (65), Expect = 5.9 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +1 Query: 100 HMKVDIRMNLKAKRVELKTRHDT-PDVSNLQKCADFVHAFMLGFDIADG-VALLRLDDLY 273 H+K D++ + +R K + + P +L D +L D V L+ D L Sbjct: 249 HLKFDLKGSTYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLV 308 Query: 274 VDSFEIKDVKTLRGEH 321 ++SF+I D L G H Sbjct: 309 LESFKIMDYSLLLGVH 324
>AGL14_ARATH (Q38838) Agamous-like MADS-box protein AGL14| Length = 221 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +1 Query: 358 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVY 510 GKT+ IEN+T ++ + + +L + V D+ +LI+ SP GK+Y Sbjct: 4 GKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLY 55
>INSI1_HUMAN (O15503) Insulin-induced gene 1 protein (INSIG-1)| Length = 277 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 12 ATVPQGPGAAAPLCAAEEGVVGYLHPCLRAHEGRHPHE 125 AT+ P C VVG L+PC+ +H G PH+ Sbjct: 120 ATIFSSAWWVPPCCGTAAAVVGLLYPCIDSHLG-EPHK 156
>PI51C_MOUSE (O70161) Phosphatidylinositol-4-phosphate 5-kinase type-1 gamma (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type I gamma) (PtdIns(4)P-5-kinase gamma) (PtdInsPKIgamma) (PIP5KIgamma) Length = 661 Score = 29.6 bits (65), Expect = 5.9 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +1 Query: 100 HMKVDIRMNLKAKRVELKTRHDT-PDVSNLQKCADFVHAFMLGFDIADG-VALLRLDDLY 273 H+K D++ + +R K + + P +L D +L D V L+ D L Sbjct: 249 HLKFDLKGSTYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLV 308 Query: 274 VDSFEIKDVKTLRGEH 321 ++SF+I D L G H Sbjct: 309 LESFKIMDYSLLLGVH 324
>INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1)| Length = 257 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 12 ATVPQGPGAAAPLCAAEEGVVGYLHPCLRAHEGRHPHE 125 AT+ P C VVG L+PC+ +H G PH+ Sbjct: 100 ATIFSSAWWVPPCCGTAAAVVGLLYPCIDSHLG-EPHK 136
>INSI1_RAT (Q08755) Insulin-induced gene 1 protein (INSIG-1) (Insulin-induced| growth response protein CL-6) (Immediate-early protein CL-6) Length = 259 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 12 ATVPQGPGAAAPLCAAEEGVVGYLHPCLRAHEGRHPHE 125 AT+ P C VVG L+PC+ +H G PH+ Sbjct: 102 ATIFSSAWWVPPCCGTAAAVVGLLYPCIDSHLG-EPHK 138
>INSI1_MOUSE (Q8BGI3) Insulin-induced gene 1 protein (INSIG-1)| Length = 259 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 12 ATVPQGPGAAAPLCAAEEGVVGYLHPCLRAHEGRHPHE 125 AT+ P C VVG L+PC+ +H G PH+ Sbjct: 102 ATIFSSAWWVPPCCGTAAAVVGLLYPCIDSHLG-EPHK 138
>TRFM_MOUSE (Q9R0R1) Melanotransferrin precursor (Membrane-bound| transferrin-like protein p97) (MTf) Length = 738 Score = 29.6 bits (65), Expect = 5.9 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +1 Query: 295 DVKTLRGEHLSRAIGRLSG--KGGKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDS 468 D TLRGE + RA G++ G YA E+ + + V+A + SF ++ Sbjct: 416 DAVTLRGEDIYRA-GKVYGLVPAAGELYAEEDRSNSYFVVAVARRDSSYSFTLDELRGKR 474 Query: 469 LCSLILGSPAG 501 C LGSPAG Sbjct: 475 SCHPYLGSPAG 485
>YGCB_ECOLI (P38036) Hypothetical protein ygcB| Length = 888 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Frame = +1 Query: 64 KAWLDIYTPVYEHMKVDIRMNLKAKRVELKTRHDTPDVS--NLQKCADFVH 210 KAWL + +++ K DIR K+ LK TP ++ + Q C F H Sbjct: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNH 114
>MAD50_ORYSA (Q9XJ60) MADS-box transcription factor 50 (OsMADS50) (Protein| SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like) (OsSOC1) (Protein AGAMOUS-like 20) (RMADS208) Length = 230 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +1 Query: 358 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSA 534 GKT+ IEN T ++ + + +L + V D+ +LI+ SP GK+Y A + Sbjct: 4 GKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQ 63 Query: 535 RLAE 546 + E Sbjct: 64 KTIE 67
>MRAW_MYCPU (Q98Q75) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 299 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = +1 Query: 319 HLSRAIGRLSGKG-----GKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSL 471 H S + +LS KG + +AIE S + I+D + I +FVN KV D + Sbjct: 34 HSSEILKKLSSKGKLIGFDQDSFAIEKSRQRLSQISDNFVLINDNFVNFKVYLDKM 89
>MADS2_ORYSA (Q40702) MADS-box transcription factor 2 (OsMADS2) (RMADS219)| (NMADS1) Length = 209 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +1 Query: 349 GKGGKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVY 510 G+G IENST ++ + + IL I V D+ +++ S AGK+Y Sbjct: 2 GRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLY 55
>SYA_METKA (Q8TWY1) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 915 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/49 (26%), Positives = 25/49 (51%) Frame = +1 Query: 286 EIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 432 E+KDV+ +RG R G + +G + + ++ R R+ T H++ Sbjct: 563 EVKDVQKVRGVVFHRIDGDVPPEGAEVECEVDGERRMRLTRNHTATHVI 611 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,050,490 Number of Sequences: 219361 Number of extensions: 1748326 Number of successful extensions: 5286 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5087 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5284 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
