ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags12j19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187552.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 621 Score = 650 bits (328), Expect = 0.0 Identities = 493/548 (89%) Strand = Plus / Plus Query: 1 agcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcgccgctg 60 ||||||||| ||||||||| | | ||||| | |||||||| ||||||||| |||||||| Sbjct: 67 agcggcgggaggccacagttcaggaaggtgccggtgccgcagcaccgcttcgcgccgctc 126 Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacatccgc 120 |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 127 aagaaggcgtggatggatatctacacccccgtctacgagcacatgaagatcgacatccgc 186 Query: 121 atgaacctcaaggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagc 180 |||||||| ||||||| |||||| ||| |||||||||| || || ||||| || |||||| Sbjct: 187 atgaaccttaaggcaagaagggtggagctgaaaacaagacaagacacacctgacgtgagc 246 Query: 181 aaccttcagaagtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgat 240 ||||||||||||||||| ||||| || ||||||||||||||||| |||||||| || ||| Sbjct: 247 aaccttcagaagtgtgcagacttcgtacatgcttttatgcttggttttgacatcgccgat 306 Query: 241 ggcgttgccttgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtg 300 | ||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct: 307 gctgttgcgctgctccgtctcgatgacctgtatgtggattcctttgagatcaaggacgtg 366 Query: 301 aagacacttcggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggc 360 |||||||| || || ||||||||||| ||||| ||||||||| | || |||||||||||| Sbjct: 367 aagacactccgaggagagcatctgtcacgtgctattggccgcttgtcaggaaaaggaggc 426 Query: 361 aagaccaaatatgccatcgagaactctaccaggactcgcatagttattgctgatacgaag 420 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| Sbjct: 427 aagaccaaatatgccatcgagaattctacgaggactcgcatagttatcgctgatacgaag 486 Query: 421 atccacatacttggctcttttgttaacatcaaggttgccagggattcactctgtagtctt 480 ||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||| Sbjct: 487 atccatatacttggatcctttgttaacatcaaggttgctcgggattcactctgtagtctt 546 Query: 481 atcttaggttctcctgccggcaaggtctattctaagcttagggctgtatctgctaggttg 540 ||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| Sbjct: 547 atcttaggttctcctgcaggcaaagtctattctaagctaagggctgtttctgctaggtta 606 Query: 541 gcagaaag 548 |||||||| Sbjct: 607 gcagaaag 614
>dbj|AK071287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088J06, full insert sequence Length = 958 Score = 642 bits (324), Expect = 0.0 Identities = 492/548 (89%) Strand = Plus / Plus Query: 1 agcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcgccgctg 60 ||||||||| ||||||||| | | ||||| | |||||||| ||||||||| |||||||| Sbjct: 234 agcggcgggaggccacagttcaggaaggtgccggtgccgcagcaccgcttcgcgccgctc 293 Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacatccgc 120 |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 294 aagaaggcgtggatggatatctacacccccgtctacgagcacatgaagatcgacatccgc 353 Query: 121 atgaacctcaaggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagc 180 |||||||| ||||||| |||||| ||| |||||||||| || || ||||| || |||||| Sbjct: 354 atgaaccttaaggcaagaagggtggagctgaaaacaagacaagacacacctgacgtgagc 413 Query: 181 aaccttcagaagtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgat 240 ||||||||||||||||| ||||| || ||||||||||||||||| |||||||| || ||| Sbjct: 414 aaccttcagaagtgtgcagacttcgtacatgcttttatgcttggttttgacatcgccgat 473 Query: 241 ggcgttgccttgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtg 300 | ||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct: 474 gctgttgcgctgctccgtctcgatgacctgtatgtggattcctttgagatcaaggacgtg 533 Query: 301 aagacacttcggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggc 360 |||||||| || || ||||||||||| ||||| ||||||||| | || |||||||||||| Sbjct: 534 aagacactccgaggagagcatctgtcacgtgctattggccgcttgtcaggaaaaggaggc 593 Query: 361 aagaccaaatatgccatcgagaactctaccaggactcgcatagttattgctgatacgaag 420 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| Sbjct: 594 aagaccaaatatgccatcgagaattctacgaggactcgcatagttatcgctgatacgaag 653 Query: 421 atccacatacttggctcttttgttaacatcaaggttgccagggattcactctgtagtctt 480 ||||| |||||||| || ||||||||||||||||||| |||||||||||||||||||| Sbjct: 654 atccatatacttggatcccttgttaacatcaaggttgctcgggattcactctgtagtctt 713 Query: 481 atcttaggttctcctgccggcaaggtctattctaagcttagggctgtatctgctaggttg 540 ||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| Sbjct: 714 atcttaggttctcctgcaggcaaagtctattctaagctaagggctgtttctgctaggtta 773 Query: 541 gcagaaag 548 |||||||| Sbjct: 774 gcagaaag 781
>ref|NM_190854.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 663 Score = 603 bits (304), Expect = e-169 Identities = 487/548 (88%) Strand = Plus / Plus Query: 1 agcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcgccgctg 60 ||||||||| |||| |||| ||| ||||| | |||||||| ||||||||| || |||||| Sbjct: 109 agcggcgggaggccccagttccggaaggtgccggtgccgcagcaccgcttcgctccgctg 168 Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacatccgc 120 |||||||||||| |||| |||||||| || |||||||||||||||||| ||||||| ||| Sbjct: 169 aagaaggcgtggatggacatctacacgcccgtctacgagcacatgaagatcgacatacgc 228 Query: 121 atgaacctcaaggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagc 180 |||||||| ||||||| |||||| ||| | ||||||||||| || ||||||||||||||| Sbjct: 229 atgaacctgaaggcaagaagggtggagctaaaaacaaggcaagacacaccagatgtgagc 288 Query: 181 aaccttcagaagtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgat 240 || |||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||| Sbjct: 289 aatcttcagaagtgtgcagacttcgtgcatgcttttatgcttggatttgacatcgcagat 348 Query: 241 ggcgttgccttgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtg 300 | |||||| ||||| || ||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 349 gccgttgcattgctccgccttgatgacttgtatgtggattccttcgagatcaaggatgtg 408 Query: 301 aagacacttcggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggc 360 |||||||| ||||| ||||||||||| ||||| |||||||| | || || ||||||||| Sbjct: 409 aagacactccggggtgagcatctgtcacgtgctattggccgtttgtcagggaaaggaggc 468 Query: 361 aagaccaaatatgccatcgagaactctaccaggactcgcatagttattgctgatacgaag 420 ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||| Sbjct: 469 aagaccaaatacgccattgagaattctaccaggactcgcatagttattgctgacacaaag 528 Query: 421 atccacatacttggctcttttgttaacatcaaggttgccagggattcactctgtagtctt 480 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct: 529 atccacatacttggatcctttgttaacatcaaggttgctcgggattcactctgtagtctc 588 Query: 481 atcttaggttctcctgccggcaaggtctattctaagcttagggctgtatctgctaggttg 540 ||||||||||||||||| ||||| || ||||| ||||| ||||| || ||||| |||||| Sbjct: 589 atcttaggttctcctgctggcaaagtgtattcaaagctaagggccgtttctgccaggttg 648 Query: 541 gcagaaag 548 || ||||| Sbjct: 649 gctgaaag 656
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 496 bits (250), Expect = e-137 Identities = 376/418 (89%) Strand = Plus / Minus Query: 131 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 190 |||||| |||||| ||| |||||||||| || || ||||| || |||||||||||||||| Sbjct: 836773 aggcaagaagggtggagctgaaaacaagacaagacacacctgacgtgagcaaccttcaga 836714 Query: 191 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 250 ||||||| ||||| || ||||||||||||||||| |||||||| || |||| ||||| Sbjct: 836713 agtgtgcagacttcgtacatgcttttatgcttggttttgacatcgccgatgctgttgcgc 836654 Query: 251 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 310 |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 836653 tgctccgtctcgatgacctgtatgtggattcctttgagatcaaggacgtgaagacactcc 836594 Query: 311 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 370 | || ||||||||||| ||||| ||||||||| | || |||||||||||||||||||||| Sbjct: 836593 gaggagagcatctgtcacgtgctattggccgcttgtcaggaaaaggaggcaagaccaaat 836534 Query: 371 atgccatcgagaactctaccaggactcgcatagttattgctgatacgaagatccacatac 430 ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 836533 atgccatcgagaattctacgaggactcgcatagttatcgctgatacgaagatccatatac 836474 Query: 431 ttggctcttttgttaacatcaaggttgccagggattcactctgtagtcttatcttaggtt 490 |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 836473 ttggatcctttgttaacatcaaggttgctcgggattcactctgtagtcttatcttaggtt 836414 Query: 491 ctcctgccggcaaggtctattctaagcttagggctgtatctgctaggttggcagaaag 548 ||||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||| Sbjct: 836413 ctcctgcaggcaaagtctattctaagctaagggctgtttctgctaggttagcagaaag 836356 Score = 161 bits (81), Expect = 3e-36 Identities = 120/133 (90%) Strand = Plus / Minus Query: 1 agcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcgccgctg 60 ||||||||| ||||||||| | | ||||| | |||||||| ||||||||| |||||||| Sbjct: 837873 agcggcgggaggccacagttcaggaaggtgccggtgccgcagcaccgcttcgcgccgctc 837814 Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacatccgc 120 |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 837813 aagaaggcgtggatggatatctacacccccgtctacgagcacatgaagatcgacatccgc 837754 Query: 121 atgaacctcaagg 133 |||||||| |||| Sbjct: 837753 atgaaccttaagg 837741
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 496 bits (250), Expect = e-137 Identities = 376/418 (89%) Strand = Plus / Minus Query: 131 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 190 |||||| |||||| ||| |||||||||| || || ||||| || |||||||||||||||| Sbjct: 836771 aggcaagaagggtggagctgaaaacaagacaagacacacctgacgtgagcaaccttcaga 836712 Query: 191 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 250 ||||||| ||||| || ||||||||||||||||| |||||||| || |||| ||||| Sbjct: 836711 agtgtgcagacttcgtacatgcttttatgcttggttttgacatcgccgatgctgttgcgc 836652 Query: 251 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 310 |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 836651 tgctccgtctcgatgacctgtatgtggattcctttgagatcaaggacgtgaagacactcc 836592 Query: 311 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 370 | || ||||||||||| ||||| ||||||||| | || |||||||||||||||||||||| Sbjct: 836591 gaggagagcatctgtcacgtgctattggccgcttgtcaggaaaaggaggcaagaccaaat 836532 Query: 371 atgccatcgagaactctaccaggactcgcatagttattgctgatacgaagatccacatac 430 ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 836531 atgccatcgagaattctacgaggactcgcatagttatcgctgatacgaagatccatatac 836472 Query: 431 ttggctcttttgttaacatcaaggttgccagggattcactctgtagtcttatcttaggtt 490 |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 836471 ttggatcctttgttaacatcaaggttgctcgggattcactctgtagtcttatcttaggtt 836412 Query: 491 ctcctgccggcaaggtctattctaagcttagggctgtatctgctaggttggcagaaag 548 ||||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||| Sbjct: 836411 ctcctgcaggcaaagtctattctaagctaagggctgtttctgctaggttagcagaaag 836354 Score = 161 bits (81), Expect = 3e-36 Identities = 120/133 (90%) Strand = Plus / Minus Query: 1 agcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcgccgctg 60 ||||||||| ||||||||| | | ||||| | |||||||| ||||||||| |||||||| Sbjct: 837871 agcggcgggaggccacagttcaggaaggtgccggtgccgcagcaccgcttcgcgccgctc 837812 Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacatccgc 120 |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 837811 aagaaggcgtggatggatatctacacccccgtctacgagcacatgaagatcgacatccgc 837752 Query: 121 atgaacctcaagg 133 |||||||| |||| Sbjct: 837751 atgaaccttaagg 837739
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 496 bits (250), Expect = e-137 Identities = 376/418 (89%) Strand = Plus / Minus Query: 131 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 190 |||||| |||||| ||| |||||||||| || || ||||| || |||||||||||||||| Sbjct: 132318 aggcaagaagggtggagctgaaaacaagacaagacacacctgacgtgagcaaccttcaga 132259 Query: 191 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 250 ||||||| ||||| || ||||||||||||||||| |||||||| || |||| ||||| Sbjct: 132258 agtgtgcagacttcgtacatgcttttatgcttggttttgacatcgccgatgctgttgcgc 132199 Query: 251 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 310 |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 132198 tgctccgtctcgatgacctgtatgtggattcctttgagatcaaggacgtgaagacactcc 132139 Query: 311 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 370 | || ||||||||||| ||||| ||||||||| | || |||||||||||||||||||||| Sbjct: 132138 gaggagagcatctgtcacgtgctattggccgcttgtcaggaaaaggaggcaagaccaaat 132079 Query: 371 atgccatcgagaactctaccaggactcgcatagttattgctgatacgaagatccacatac 430 ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 132078 atgccatcgagaattctacgaggactcgcatagttatcgctgatacgaagatccatatac 132019 Query: 431 ttggctcttttgttaacatcaaggttgccagggattcactctgtagtcttatcttaggtt 490 |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 132018 ttggatcctttgttaacatcaaggttgctcgggattcactctgtagtcttatcttaggtt 131959 Query: 491 ctcctgccggcaaggtctattctaagcttagggctgtatctgctaggttggcagaaag 548 ||||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||| Sbjct: 131958 ctcctgcaggcaaagtctattctaagctaagggctgtttctgctaggttagcagaaag 131901 Score = 161 bits (81), Expect = 3e-36 Identities = 120/133 (90%) Strand = Plus / Minus Query: 1 agcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcgccgctg 60 ||||||||| ||||||||| | | ||||| | |||||||| ||||||||| |||||||| Sbjct: 133418 agcggcgggaggccacagttcaggaaggtgccggtgccgcagcaccgcttcgcgccgctc 133359 Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacatccgc 120 |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 133358 aagaaggcgtggatggatatctacacccccgtctacgagcacatgaagatcgacatccgc 133299 Query: 121 atgaacctcaagg 133 |||||||| |||| Sbjct: 133298 atgaaccttaagg 133286
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 472 bits (238), Expect = e-130 Identities = 373/418 (89%) Strand = Plus / Minus Query: 131 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 190 |||||| |||||| ||| | ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 33476283 aggcaagaagggtggagctaaaaacaaggcaagacacaccagatgtgagcaatcttcaga 33476224 Query: 191 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 250 ||||||| ||||| ||||||||||||||||||||||||||||| || |||| |||||| | Sbjct: 33476223 agtgtgcagacttcgtgcatgcttttatgcttggatttgacatcgcagatgccgttgcat 33476164 Query: 251 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 310 |||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||| | Sbjct: 33476163 tgctccgccttgatgacttgtatgtggattccttcgagatcaaggatgtgaagacactcc 33476104 Query: 311 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 370 |||| ||||||||||| ||||| |||||||| | || || ||||||||||||||||||| Sbjct: 33476103 ggggtgagcatctgtcacgtgctattggccgtttgtcagggaaaggaggcaagaccaaat 33476044 Query: 371 atgccatcgagaactctaccaggactcgcatagttattgctgatacgaagatccacatac 430 | ||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 33476043 acgccattgagaattctaccaggactcgcatagttattgctgacacaaagatccacatac 33475984 Query: 431 ttggctcttttgttaacatcaaggttgccagggattcactctgtagtcttatcttaggtt 490 |||| || |||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 33475983 ttggatcctttgttaacatcaaggttgctcgggattcactctgtagtctcatcttaggtt 33475924 Query: 491 ctcctgccggcaaggtctattctaagcttagggctgtatctgctaggttggcagaaag 548 ||||||| ||||| || ||||| ||||| ||||| || ||||| |||||||| ||||| Sbjct: 33475923 ctcctgctggcaaagtgtattcaaagctaagggccgtttctgccaggttggctgaaag 33475866 Score = 137 bits (69), Expect = 4e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 1 agcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcgccgctg 60 ||||||||| |||| |||| ||| ||||| | |||||||| ||||||||| || |||||| Sbjct: 33477339 agcggcgggaggccccagttccggaaggtgccggtgccgcagcaccgcttcgctccgctg 33477280 Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacatccgc 120 |||||||||||| |||| |||||||| || |||||||||||||||||| ||||||| ||| Sbjct: 33477279 aagaaggcgtggatggacatctacacgcccgtctacgagcacatgaagatcgacatacgc 33477220 Query: 121 atgaacctcaagg 133 |||||||| |||| Sbjct: 33477219 atgaacctgaagg 33477207
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 472 bits (238), Expect = e-130 Identities = 373/418 (89%) Strand = Plus / Minus Query: 131 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 190 |||||| |||||| ||| | ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 21480 aggcaagaagggtggagctaaaaacaaggcaagacacaccagatgtgagcaatcttcaga 21421 Query: 191 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 250 ||||||| ||||| ||||||||||||||||||||||||||||| || |||| |||||| | Sbjct: 21420 agtgtgcagacttcgtgcatgcttttatgcttggatttgacatcgcagatgccgttgcat 21361 Query: 251 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 310 |||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||| | Sbjct: 21360 tgctccgccttgatgacttgtatgtggattccttcgagatcaaggatgtgaagacactcc 21301 Query: 311 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 370 |||| ||||||||||| ||||| |||||||| | || || ||||||||||||||||||| Sbjct: 21300 ggggtgagcatctgtcacgtgctattggccgtttgtcagggaaaggaggcaagaccaaat 21241 Query: 371 atgccatcgagaactctaccaggactcgcatagttattgctgatacgaagatccacatac 430 | ||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 21240 acgccattgagaattctaccaggactcgcatagttattgctgacacaaagatccacatac 21181 Query: 431 ttggctcttttgttaacatcaaggttgccagggattcactctgtagtcttatcttaggtt 490 |||| || |||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 21180 ttggatcctttgttaacatcaaggttgctcgggattcactctgtagtctcatcttaggtt 21121 Query: 491 ctcctgccggcaaggtctattctaagcttagggctgtatctgctaggttggcagaaag 548 ||||||| ||||| || ||||| ||||| ||||| || ||||| |||||||| ||||| Sbjct: 21120 ctcctgctggcaaagtgtattcaaagctaagggccgtttctgccaggttggctgaaag 21063 Score = 137 bits (69), Expect = 4e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 1 agcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcgccgctg 60 ||||||||| |||| |||| ||| ||||| | |||||||| ||||||||| || |||||| Sbjct: 22536 agcggcgggaggccccagttccggaaggtgccggtgccgcagcaccgcttcgctccgctg 22477 Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacatccgc 120 |||||||||||| |||| |||||||| || |||||||||||||||||| ||||||| ||| Sbjct: 22476 aagaaggcgtggatggacatctacacgcccgtctacgagcacatgaagatcgacatacgc 22417 Query: 121 atgaacctcaagg 133 |||||||| |||| Sbjct: 22416 atgaacctgaagg 22404
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415A04 Length = 160669 Score = 472 bits (238), Expect = e-130 Identities = 373/418 (89%) Strand = Plus / Minus Query: 131 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 190 |||||| |||||| ||| | ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 152449 aggcaagaagggtggagctaaaaacaaggcaagacacaccagatgtgagcaatcttcaga 152390 Query: 191 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 250 ||||||| ||||| ||||||||||||||||||||||||||||| || |||| |||||| | Sbjct: 152389 agtgtgcagacttcgtgcatgcttttatgcttggatttgacatcgcagatgccgttgcat 152330 Query: 251 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 310 |||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||| | Sbjct: 152329 tgctccgccttgatgacttgtatgtggattccttcgagatcaaggatgtgaagacactcc 152270 Query: 311 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 370 |||| ||||||||||| ||||| |||||||| | || || ||||||||||||||||||| Sbjct: 152269 ggggtgagcatctgtcacgtgctattggccgtttgtcagggaaaggaggcaagaccaaat 152210 Query: 371 atgccatcgagaactctaccaggactcgcatagttattgctgatacgaagatccacatac 430 | ||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 152209 acgccattgagaattctaccaggactcgcatagttattgctgacacaaagatccacatac 152150 Query: 431 ttggctcttttgttaacatcaaggttgccagggattcactctgtagtcttatcttaggtt 490 |||| || |||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 152149 ttggatcctttgttaacatcaaggttgctcgggattcactctgtagtctcatcttaggtt 152090 Query: 491 ctcctgccggcaaggtctattctaagcttagggctgtatctgctaggttggcagaaag 548 ||||||| ||||| || ||||| ||||| ||||| || ||||| |||||||| ||||| Sbjct: 152089 ctcctgctggcaaagtgtattcaaagctaagggccgtttctgccaggttggctgaaag 152032 Score = 137 bits (69), Expect = 4e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 1 agcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcgccgctg 60 ||||||||| |||| |||| ||| ||||| | |||||||| ||||||||| || |||||| Sbjct: 153505 agcggcgggaggccccagttccggaaggtgccggtgccgcagcaccgcttcgctccgctg 153446 Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacatccgc 120 |||||||||||| |||| |||||||| || |||||||||||||||||| ||||||| ||| Sbjct: 153445 aagaaggcgtggatggacatctacacgcccgtctacgagcacatgaagatcgacatacgc 153386 Query: 121 atgaacctcaagg 133 |||||||| |||| Sbjct: 153385 atgaacctgaagg 153373
>gb|AY110812.1| Zea mays CL13054_1 mRNA sequence Length = 596 Score = 313 bits (158), Expect = 3e-82 Identities = 275/314 (87%) Strand = Plus / Minus Query: 229 gacattgctgatggcgttgccttgcttcgtcttgatgacctgtatgtggattcctttgag 288 ||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 586 gacattgctgatgccgtcgccttgctgcgtcttgatgatctgtatgtggattcctttgag 527 Query: 289 atcaaggatgtgaagacacttcggggggagcatctgtcgcgtgccattggccgcctatcg 348 |||||||| |||||||| | || ||||||||||||||||| || ||||||||| |||| Sbjct: 526 atcaaggacgtgaagaccttgcgaggggagcatctgtcgcgcgctattggccgcttatca 467 Query: 349 ggaaaaggaggcaagaccaaatatgccatcgagaactctaccaggactcgcatagttatt 408 || ||||||||||||||||| || ||||| |||||||| |||||||| ||||| || || Sbjct: 466 gggaaaggaggcaagaccaagtacgccattgagaactcaaccaggacccgcatcgtcatc 407 Query: 409 gctgatacgaagatccacatacttggctcttttgttaacatcaaggttgccagggattca 468 |||||||| ||||||||||||||||| || || |||||||||||||| || |||||||| Sbjct: 406 gctgatacaaagatccacatacttggatccttcgttaacatcaaggtcgcgcgggattca 347 Query: 469 ctctgtagtcttatcttaggttctcctgccggcaaggtctattctaagcttagggctgta 528 || || ||||| ||||| ||||||||||| ||||| || |||||||| || ||||||||| Sbjct: 346 ctttgcagtctcatcttgggttctcctgctggcaaagtgtattctaaactaagggctgta 287 Query: 529 tctgctaggttggc 542 || ||||||||||| Sbjct: 286 tcagctaggttggc 273
>gb|AY344058.1| Sorghum bicolor partner of Nob1 mRNA, complete cds Length = 819 Score = 301 bits (152), Expect = 1e-78 Identities = 242/272 (88%) Strand = Plus / Plus Query: 277 gattcctttgagatcaaggatgtgaagacacttcggggggagcatctgtcgcgtgccatt 336 |||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||| Sbjct: 421 gattcctttgagatcaaggacgtgaagaccctgcgaggggagcatctgtcgcgtgctatt 480 Query: 337 ggccgcctatcgggaaaaggaggcaagaccaaatatgccatcgagaactctaccaggact 396 ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 481 ggccgcctatcagggaaaggaggcaagaccaagtatgccattgagaactctaccaggacc 540 Query: 397 cgcatagttattgctgatacgaagatccacatacttggctcttttgttaacatcaaggtt 456 ||||| ||||| |||||||| |||||||| |||||||| || |||||||||||||||||| Sbjct: 541 cgcatcgttatcgctgatacaaagatccatatacttggatcctttgttaacatcaaggtt 600 Query: 457 gccagggattcactctgtagtcttatcttaggttctcctgccggcaaggtctattctaag 516 || ||||||| || || ||||| ||||| ||||||||||| ||||| || ||||| ||| Sbjct: 601 gcgcgggattcgctttgcagtctcatcttgggttctcctgctggcaaagtgtattcgaag 660 Query: 517 cttagggctgtatctgctaggttggcagaaag 548 || ||||||||||| ||||||||||| ||||| Sbjct: 661 ctaagggctgtatcagctaggttggcggaaag 692 Score = 178 bits (90), Expect = 1e-41 Identities = 135/150 (90%) Strand = Plus / Plus Query: 74 tggatatctacacccctgtctacgagcacatgaaggtcgacatccgcatgaacctcaagg 133 |||| |||||||| || || ||||||||||||||| ||||||| |||||||||||||||| Sbjct: 272 tggaaatctacacgcccgtgtacgagcacatgaagatcgacatacgcatgaacctcaagg 331 Query: 134 caaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcagaagt 193 ||| ||||| ||| | || ||||| || ||||||||||||||||||||||||||||||| Sbjct: 332 caaggagggtggagctaaagacaagacaagatacaccagatgtgagcaaccttcagaagt 391 Query: 194 gtgcggactttgtgcatgcttttatgcttg 223 |||| ||||||||||||||||||||||||| Sbjct: 392 gtgctgactttgtgcatgcttttatgcttg 421
>emb|CR931733.2| Medicago truncatula chromosome 5 clone mth2-38a4, COMPLETE SEQUENCE Length = 124746 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 262 gatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttcg 311 ||||| || ||||| || |||||||||||||||||||| ||||||||||| Sbjct: 53733 gatgaactctatgttgagtcctttgagatcaaggatgttaagacacttcg 53684
>gb|AC147712.17| Medicago truncatula clone mth2-34f1, complete sequence Length = 136410 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 256 cgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttcg 311 ||||| ||||| || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 113942 cgtctggatgagctctatgttgagtcctttgagattaaggatgttaagacacttcg 113997
>gb|AF154661.1| Nicotiana tabacum clone PR52 mRNA sequence Length = 871 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Plus Query: 275 tggattcctttgagatcaaggatgtgaagacacttcggggggagcatctgtc 326 ||||||| |||||||| |||||||||||||| || || || |||||| |||| Sbjct: 434 tggattcgtttgagattaaggatgtgaagacgctgcgtggcgagcatttgtc 485 Score = 42.1 bits (21), Expect = 1.9 Identities = 54/65 (83%) Strand = Plus / Plus Query: 455 ttgccagggattcactctgtagtcttatcttaggttctcctgccggcaaggtctattcta 514 |||| |||||||| || ||||| ||||| | || |||||||| || ||||| ||||||| Sbjct: 614 ttgctagggattcgctttgtagccttattatggggtctcctgctggtaaggtttattcta 673 Query: 515 agctt 519 ||||| Sbjct: 674 agctt 678
>ref|NM_112167.2| Arabidopsis thaliana nucleic acid binding AT3G13230 mRNA, complete cds Length = 891 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 283 tttgagatcaaggatgtgaagac 305 ||||||||||||||||||||||| Sbjct: 491 tttgagatcaaggatgtgaagac 513 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 116 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 269 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 324
>gb|BT015168.1| Arabidopsis thaliana At3g13230 gene, complete cds Length = 648 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 283 tttgagatcaaggatgtgaagac 305 ||||||||||||||||||||||| Sbjct: 382 tttgagatcaaggatgtgaagac 404 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 116 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 160 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 215
>gb|BT008667.1| Arabidopsis thaliana clone RAFL17-07-B10 (R50354) mRNA, complete sequence Length = 1275 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 283 tttgagatcaaggatgtgaagac 305 ||||||||||||||||||||||| Sbjct: 861 tttgagatcaaggatgtgaagac 883 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 116 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 639 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 694
>emb|BX825460.1|CNS0A50J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL38ZE10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 828 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 283 tttgagatcaaggatgtgaagac 305 ||||||||||||||||||||||| Sbjct: 444 tttgagatcaaggatgtgaagac 466 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 116 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 222 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 277
>gb|AY089052.1| Arabidopsis thaliana clone 22588 mRNA, complete sequence Length = 867 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 283 tttgagatcaaggatgtgaagac 305 ||||||||||||||||||||||| Sbjct: 490 tttgagatcaaggatgtgaagac 512 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 116 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 269 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 324
>dbj|AB024034.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDC11 Length = 86233 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 283 tttgagatcaaggatgtgaagac 305 ||||||||||||||||||||||| Sbjct: 10967 tttgagatcaaggatgtgaagac 10989 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 61 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 116 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 10745 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 10800
>gb|AC159971.4| Mus musculus chromosome 5, clone RP23-263G19, complete sequence Length = 163375 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 221 ttggatttgacattgctgatgg 242 |||||||||||||||||||||| Sbjct: 150214 ttggatttgacattgctgatgg 150193
>gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence Length = 76665 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 279 ttcctttgagatcaaggatgtg 300 |||||||||||||||||||||| Sbjct: 73915 ttcctttgagatcaaggatgtg 73936
>gb|AC091759.2| Sus scrofa clone RP44-484M10, complete sequence Length = 168703 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 279 ttcctttgagatcaaggatgtg 300 |||||||||||||||||||||| Sbjct: 25841 ttcctttgagatcaaggatgtg 25862
>gb|AC156592.2| Laccaria bicolor clone JGIAHZW-10X, complete sequence Length = 37070 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 277 gattcctttgagatcaaggatgtgaa 302 ||||| |||||||||||||||||||| Sbjct: 17334 gattcatttgagatcaaggatgtgaa 17309
>gb|AC109165.11| Mus musculus chromosome 5, clone RP23-30B3, complete sequence Length = 202377 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 221 ttggatttgacattgctgatgg 242 |||||||||||||||||||||| Sbjct: 172001 ttggatttgacattgctgatgg 172022
>gb|BC063190.1| Xenopus tropicalis ubiquilin 2, mRNA (cDNA clone MGC:75576 IMAGE:5379110), complete cds Length = 3130 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 cttggatttgacattgctgat 240 ||||||||||||||||||||| Sbjct: 1572 cttggatttgacattgctgat 1552
>gb|BC077987.1| Xenopus laevis ubiquilin 2, mRNA (cDNA clone MGC:81673 IMAGE:6864615), complete cds Length = 2594 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 cttggatttgacattgctgat 240 ||||||||||||||||||||| Sbjct: 1630 cttggatttgacattgctgat 1610
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Minus Query: 262 gatgacctgtatgtggattcctttgagatcaaggatgtgaagaca 306 |||||| ||||| | || || ||||||||||||||||| |||||| Sbjct: 1567300 gatgacttgtatcttgactcttttgagatcaaggatgtcaagaca 1567256
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 34 gtgccgccgcaccgctttgcgccgc 58 ||||||||||||||||| ||||||| Sbjct: 3047703 gtgccgccgcaccgcttcgcgccgc 3047727
>ref|XM_534357.2| PREDICTED: Canis familiaris solute carrier family 23 (nucleobase transporters), member 2 (SLC23A2), mRNA Length = 2830 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 accaaatatgccatcgagaac 384 ||||||||||||||||||||| Sbjct: 1299 accaaatatgccatcgagaac 1279
>emb|CT025388.2| Xenopus tropicalis finished cDNA, clone TGas087c05 Length = 3127 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 cttggatttgacattgctgat 240 ||||||||||||||||||||| Sbjct: 1534 cttggatttgacattgctgat 1514
>ref|XM_566941.1| Cryptococcus neoformans var. neoformans JEC21 chaperone (CNA05860) partial mRNA Length = 965 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 262 gatgacctgtatgtggattcctttgagatcaaggatgtgaagaca 306 |||||| ||||| | || || ||||||||||||||||| |||||| Sbjct: 577 gatgacttgtatcttgactcttttgagatcaaggatgtcaagaca 621
>gb|AY231920.1| Drosophila yakuba clone yak-em_CG11738 mRNA sequence Length = 324 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 265 gacctgtatgtggattcctttgagatcaaggatgtgaagacacttcggggggagcatctg 324 ||||||| ||| || || || ||||||||||| |||||||| || || || || || | | Sbjct: 37 gacctgtttgtcgagtcgttcgagatcaaggacgtgaagactctgcgcggcgaccaccag 96 Query: 325 tcgcgtgccattggccg 341 ||||| ||||||||||| Sbjct: 97 tcgcgcgccattggccg 113
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 ttgctgatggcgttgccttgc 253 ||||||||||||||||||||| Sbjct: 106635 ttgctgatggcgttgccttgc 106615
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 34 gtgccgccgcaccgctttgcgccgc 58 ||||||||||||||||| ||||||| Sbjct: 1226469 gtgccgccgcaccgcttcgcgccgc 1226493
>ref|NM_203890.1| Xenopus tropicalis ubiquilin 2 (ubqln2), mRNA Length = 3130 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 cttggatttgacattgctgat 240 ||||||||||||||||||||| Sbjct: 1572 cttggatttgacattgctgat 1552
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 gcgccgctgaagaaggcgtgg 72 ||||||||||||||||||||| Sbjct: 5887157 gcgccgctgaagaaggcgtgg 5887137
>gb|AY264779.1| Canis familiaris SVCT2-like protein mRNA, partial cds Length = 763 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 accaaatatgccatcgagaac 384 ||||||||||||||||||||| Sbjct: 253 accaaatatgccatcgagaac 233
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 gtgccgccgcaccgctttgcgccgc 58 ||||||||||||||||| ||||||| Sbjct: 1408662 gtgccgccgcaccgcttcgcgccgc 1408638
>ref|NM_214178.1| Sus scrofa solute carrier family 23 (nucleobase transporters), member 2 (SLC23A2), mRNA Length = 1953 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 accaaatatgccatcgagaac 384 ||||||||||||||||||||| Sbjct: 1296 accaaatatgccatcgagaac 1276
>gb|AF118561.1|AF118561 Oryctolagus cuniculus sodium-coupled ascorbic acid transporter SVCT2 mRNA, partial cds Length = 1236 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 accaaatatgccatcgagaac 384 ||||||||||||||||||||| Sbjct: 846 accaaatatgccatcgagaac 826
>gb|AF058320.1|AF058320 Sus scrofa yolk sac permease-like molecule 2 (YSPL2) mRNA, complete cds Length = 1953 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 accaaatatgccatcgagaac 384 ||||||||||||||||||||| Sbjct: 1296 accaaatatgccatcgagaac 1276
>gb|AC114663.8| Mus musculus chromosome 1, clone RP24-172O22, complete sequence Length = 167652 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 agatccacatacttggctct 438 |||||||||||||||||||| Sbjct: 83585 agatccacatacttggctct 83604
>gb|AC158967.5| Mus musculus chromosome 1, clone RP23-39N17, complete sequence Length = 244130 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 agatccacatacttggctct 438 |||||||||||||||||||| Sbjct: 175448 agatccacatacttggctct 175467
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 gccgccgcaccgctttgcgccgct 59 ||||||||||||| |||||||||| Sbjct: 3070950 gccgccgcaccgccttgcgccgct 3070927
>ref|XM_592662.2| PREDICTED: Bos taurus similar to Down syndrome cell adhesion molecule precursor (CHD2) (LOC514757), partial mRNA Length = 4033 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ttgagatcaaggatgtgaag 303 |||||||||||||||||||| Sbjct: 316 ttgagatcaaggatgtgaag 335
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 gccgccgcaccgctttgcgccgct 59 ||||||||||||| |||||||||| Sbjct: 161524 gccgccgcaccgccttgcgccgct 161547
>gb|AC172242.3| Gallus gallus BAC clone CH261-162M6 from chromosome ul, complete sequence Length = 252782 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 tgagatcaaggatgtgaaga 304 |||||||||||||||||||| Sbjct: 3100 tgagatcaaggatgtgaaga 3081
>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence Length = 179668 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tatgtggattcctttgagat 290 |||||||||||||||||||| Sbjct: 55641 tatgtggattcctttgagat 55660
>emb|AL050308.9|HSG164F24 Human DNA sequence from clone GS1-164F24 on chromosome Xq26.3-27.3 Contains a NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) (NDUFB3) pseudogene and part of a novel gene, complete sequence Length = 213084 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 caaggatgtgaagacacttc 310 |||||||||||||||||||| Sbjct: 107319 caaggatgtgaagacacttc 107300
>ref|XM_966258.1| PREDICTED: Tribolium castaneum similar to CG11738-PA (LOC659994), mRNA Length = 861 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 286 gagatcaaggatgtgaagacacttcggggggagcatctgtcgcgtgccattggccg 341 ||||| ||||| ||||||||||| |||||| || | |||||| ||||||||||| Sbjct: 555 gagattaaggacgtgaagacactcaagggggaccaccagtcgcgggccattggccg 610
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 gccgccgcaccgctttgcgccgct 59 ||||||||||||| |||||||||| Sbjct: 4013176 gccgccgcaccgccttgcgccgct 4013199
>gb|AC154796.2| Mus musculus BAC clone RP24-490B17 from chromosome 17, complete sequence Length = 161075 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ttgaaaacaaggcatgatac 167 |||||||||||||||||||| Sbjct: 131351 ttgaaaacaaggcatgatac 131332
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 aaggtccaggtgccgccgca 44 |||||||||||||||||||| Sbjct: 1740047 aaggtccaggtgccgccgca 1740066
>gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, complete sequence Length = 173993 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tatgtggattcctttgagat 290 |||||||||||||||||||| Sbjct: 61138 tatgtggattcctttgagat 61157
>ref|XM_321458.2| Anopheles gambiae str. PEST ENSANGP00000022076 (ENSANGG00000019587), partial mRNA Length = 600 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tgccatcgagaactctacca 391 |||||||||||||||||||| Sbjct: 330 tgccatcgagaactctacca 349 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,979,437 Number of Sequences: 3902068 Number of extensions: 3979437 Number of successful extensions: 72115 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71743 Number of HSP's gapped (non-prelim): 372 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
