ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags12j15 |
|---|---|
| Clone Library Name | barley_pub |
>WBP2_MOUSE (P97765) WW domain-binding protein 2 (WBP-2)| Length = 261 Score = 40.8 bits (94), Expect = 0.002 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Frame = +2 Query: 38 EXFVLARDGVEFHVDKIPSAPGGHAKTK-GTIYLSNIRMVFVAAKPIGNFFAFDMPLLYV 214 E +++ D VE + + + P TK GT+YL+ R++F++ K +F MP + Sbjct: 19 ESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFLS-KGKDAMQSFMMPFYLM 77 Query: 215 HGEKFNQPIFHCNNISGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSV 394 + QP+F N F++ +V + ++K+ F GG F L + + Sbjct: 78 KDCEIKQPVFGAN----FIKGIVKAEAGGGWEGSASYKLTFTAGGAIEFGQRMLQVASQA 133 Query: 395 RR 400 R Sbjct: 134 SR 135
>WBP2_HUMAN (Q969T9) WW domain-binding protein 2 (WBP-2)| Length = 261 Score = 39.7 bits (91), Expect = 0.005 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 1/122 (0%) Frame = +2 Query: 38 EXFVLARDGVEFHVDKIPSAPGGHAKTK-GTIYLSNIRMVFVAAKPIGNFFAFDMPLLYV 214 E +++ D VE + + + P TK GT+YL+ R++F++ K +F MP + Sbjct: 19 ESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFLS-KGKDAMQSFMMPFYLM 77 Query: 215 HGEKFNQPIFHCNNISGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSV 394 + QP+F N I G V + ++K+ F GG F L + + Sbjct: 78 KDCEIKQPVFGANYIKG----TVKAEAGGGWEGSASYKLTFTAGGAIEFGQRMLQVASQA 133 Query: 395 RR 400 R Sbjct: 134 SR 135
>WBP2_RAT (Q8R478) WW domain-binding protein 2 (WBP-2)| Length = 262 Score = 39.3 bits (90), Expect = 0.007 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 1/122 (0%) Frame = +2 Query: 38 EXFVLARDGVEFHVDKIPSAPGGHAKTK-GTIYLSNIRMVFVAAKPIGNFFAFDMPLLYV 214 E +++ D VE + + + P TK GT+YL+ R++F+ +K +F MP + Sbjct: 19 ESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL-SKGKDAMRSFMMPFYLM 77 Query: 215 HGEKFNQPIFHCNNISGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSV 394 + QP+F N F++ V + ++K+ F GG F L + + Sbjct: 78 KDCEVKQPVFGAN----FIKGTVKAEAGGGWEGSASYKLTFTAGGAIEFGQQMLQVASQA 133 Query: 395 RR 400 R Sbjct: 134 SR 135
>SEC16_SCHPO (O14029) Multidomain vesicle coat protein| Length = 1995 Score = 34.3 bits (77), Expect = 0.21 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = +2 Query: 230 NQPIFHCNNISGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLF---LNLITSVRR 400 NQP+ H +N+ V PVV +++ L T + F G CGT V F L T+ + Sbjct: 1061 NQPLLH-SNLHSPVSPVVDSNEDSRLKFLSTQRPAFSFGPCGTIVMAFSTPSGLYTTSGK 1119 Query: 401 HNQFEAQPATVPRV 442 +F A P + ++ Sbjct: 1120 GTKFIAGPIKIEKL 1133
>ATF7_MOUSE (Q8R0S1) Cyclic AMP-dependent transcription factor ATF-7| (Activating transcription factor 7) (Transcription factor ATF-A) Length = 413 Score = 30.8 bits (68), Expect = 2.3 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Frame = +2 Query: 236 PIFHCNNISGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQF- 412 P+ + +IS P+ E++ R L +T T ++ GGCG V ++T+ NQ Sbjct: 238 PVNNSGSISPSGHPMPSEAKMR-LKATLTHQVSSINGGCGMVVGTASTMVTARPEQNQIL 296 Query: 413 ----EAQPATVPRVDPMQAAQTPVDDMMRHAYVDPHDP 514 +A P+V P Q TP R VD DP Sbjct: 297 IQHPDAPSPAQPQVSPAQ--PTPSTGGRRRRTVD-EDP 331
>RECA_ANAVT (P14167) Protein recA (Recombinase A)| Length = 358 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = +2 Query: 269 VEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQFEAQPATVPRVDP 448 +E PES + + H + KEGG FV L + + Q V + D Sbjct: 65 IEIYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDT 124 Query: 449 MQAAQTPVDDMMRHAYVD 502 ++A VD ++R A VD Sbjct: 125 GESALEIVDQLVRSAAVD 142
>RECA_ANASP (P58552) Protein recA (Recombinase A)| Length = 357 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = +2 Query: 269 VEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQFEAQPATVPRVDP 448 +E PES + + H + KEGG FV L + + Q V + D Sbjct: 65 IEIYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDT 124 Query: 449 MQAAQTPVDDMMRHAYVD 502 ++A VD ++R A VD Sbjct: 125 GESALEIVDQLVRSAAVD 142
>ZSWM4_MOUSE (Q8C7B8) Zinc finger SWIM domain-containing protein 4| Length = 1101 Score = 29.6 bits (65), Expect = 5.2 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%) Frame = -3 Query: 402 WRRTDVIRFRKSGTKVPHPPSLNKILKVW------VEYKALFWLSGTTGST 268 WRR +++R+ S PP+L I+K W VE + ++GTT +T Sbjct: 799 WRRREMVRWLVSCATEIGPPALMSIMKNWYSLFTPVEAVTIVAVTGTTHAT 849
>CSN12_ASPFU (Q4WJX0) COP9 signalosome complex subunit 12| Length = 455 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -2 Query: 148 PYVRKVYGALCFCVTAGRRGDLVDVELDAVAGEDELL 38 P + K++ LC C+ R+GDLV + AGE+E + Sbjct: 314 PRLEKLFRPLCDCI---RKGDLVGFDTAMFAGEEEFV 347
>ATF7_HUMAN (P17544) Cyclic AMP-dependent transcription factor ATF-7| (Activating transcription factor 7) (Transcription factor ATF-A) Length = 494 Score = 29.3 bits (64), Expect = 6.8 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 8/95 (8%) Frame = +2 Query: 254 NISGFVEPV---VPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQF---- 412 N SG + P +P L +T T ++ GGCG V ++T+ +Q Sbjct: 251 NSSGSISPSGHPIPSEAKMRLKATLTHQVSSINGGCGMVVGTASTMVTARPEQSQILIQH 310 Query: 413 -EAQPATVPRVDPMQAAQTPVDDMMRHAYVDPHDP 514 +A P+V P Q TP R VD DP Sbjct: 311 PDAPSPAQPQVSPAQ--PTPSTGGRRRRTVD-EDP 342
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 29.3 bits (64), Expect = 6.8 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Frame = +1 Query: 277 GCSRKPEQGFVLHPHLQDLVQGRWMWHLCATFPE---PDH-VSAAPQSV*SPACYRAPCG 444 G + + QG V +QG W+ + P P H V+A P V + AC PC Sbjct: 1903 GSAEEAPQGLV------GCIQGVWLGSTPSGSPALLPPSHRVNAEPGCVVTNACASGPCP 1956 Query: 445 PHA 453 PHA Sbjct: 1957 PHA 1959
>CLPB_PHOLL (Q7N788) Chaperone clpB| Length = 857 Score = 29.3 bits (64), Expect = 6.8 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +2 Query: 296 NRALYSTHTFKILFKEGGCGTFVPLFLNL-ITSVRRHNQFEAQPATVPRVDPMQAAQTPV 472 N+ + H L K+ G G+ PL ++ I + R NQ E +PRV + P Sbjct: 26 NQFIEPIHLMSSLLKQEG-GSIRPLLTSIGIDAGRFSNQLELALERLPRVQGIGGDVQPS 84 Query: 473 DDMMRH 490 +D++RH Sbjct: 85 NDLVRH 90
>INX7_DROME (Q9V3W6) Innexin inx7 (Innexin-7) (Gap junction protein prp7)| (Pas-related protein 7) Length = 438 Score = 29.3 bits (64), Expect = 6.8 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +1 Query: 304 FVLHPHLQDLVQGRWMWHLCATFPEPDH---VSAAPQSV*SPACYRAP 438 F L +L + + + ++HL + FP PDH V+A ++ +PA R P Sbjct: 352 FFLRSNLSEFLFKKVIYHLASEFPNPDHDNDVNAYREAPPTPAKNRYP 399
>DLLC_BRARE (Q9IAT6) Delta-like protein C precursor (DeltaC protein) (delC)| Length = 664 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = -3 Query: 219 PCTYNRGISKAKKFPIGLAATNTILMLERYMVPFVFA*PPGAEGILSTWNSTPSRART 46 PCTY G+S+ + + ++I VPF F P I+ TWN+ S T Sbjct: 64 PCTYGTGMSE-------ILSADSISSSAYISVPFNFKWPGIVSLIIETWNAETSDQST 114
>FZD6_CANFA (Q8WMU5) Frizzled 6 precursor (Frizzled-6) (Fz-6)| Length = 712 Score = 28.9 bits (63), Expect = 8.9 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +2 Query: 392 VRRHNQFEAQPATVPRVDPMQAAQTPVDDMMRH 490 VR H+ F +P TVPR M T ++MRH Sbjct: 16 VRGHSLFTCEPITVPRCMKMAYNMTFFPNLMRH 48
>ATF7_PONPY (Q5R9C9) Cyclic AMP-dependent transcription factor ATF-7| (Activating transcription factor 7) (Transcription factor ATF-A) Length = 483 Score = 28.9 bits (63), Expect = 8.9 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 8/95 (8%) Frame = +2 Query: 254 NISGFVEPV---VPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQF---- 412 N SG + P +P L +T T ++ GGCG V ++T+ +Q Sbjct: 240 NSSGSISPSGHPIPSEAKMRLKATLTHQVSSINGGCGMVVGSASTMVTARPEQSQILIQH 299 Query: 413 -EAQPATVPRVDPMQAAQTPVDDMMRHAYVDPHDP 514 +A P+V P Q TP R VD DP Sbjct: 300 PDAPSPAQPQVSPAQ--PTPSTGGRRRRTVD-EDP 331 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,524,311 Number of Sequences: 219361 Number of extensions: 1837894 Number of successful extensions: 5332 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5087 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5327 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
