ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags12j15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596598.1| Saccharum officinarum clone SCCCCL3001E12, complete sequence Length = 1052 Score = 389 bits (196), Expect = e-105 Identities = 430/507 (84%), Gaps = 6/507 (1%) Strand = Plus / Plus Query: 18 tgcccgtgcccttccacggcgagnagttcgtcctcgcccgcgacggcgtcgagttccacg 77 |||| ||||| ||| |||||||| |||||||||||| || ||||||||||||||||||| Sbjct: 163 tgccggtgccgttctacggcgagatgttcgtcctcgcgcgggacggcgtcgagttccacg 222 Query: 78 tcgacaagatcccctcggcgcccggcggtcacgcaaaaacaaagggcaccatataccttt 137 ||||||||||||| || || || |||||||| | |||||||| ||||| || ||||| | Sbjct: 223 tcgacaagatcccgtcagctcctggcggtcaagtgaaaacaaaaggcacgatttacctgt 282 Query: 138 ctaacataaggatggtgtttgtcgccgccaagcctattgggaatttctttgccttcgata 197 |||| ||||||||||||||||| ||| ||||||| |||| || |||||||| || |||| Sbjct: 283 ctaatataaggatggtgtttgttgccaacaagcctgttggcaacttctttgcttttgata 342 Query: 198 tgcctctgttgtacgtgcacggtgagaagttcaaccagccgatatttcactgcaacaata 257 |||| ||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| | Sbjct: 343 tgccactgttgtttgtgcatggtgagaagttcaatcagcccatatttcactgcaacaaca 402 Query: 258 tctctggatttgttgagccggttgttccagaaagccagaacagggctttgtactccaccc 317 |||||||||||||||| || ||||||||||| | ||||||||||| ||||||| || | Sbjct: 403 tctctggatttgttgaaccagttgttccagacaatcagaacagggccctgtactcaactc 462 Query: 318 acaccttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccacttttcctga 377 ||||||||||||||||||||||||| || || ||||| || ||||| || || ||||||| Sbjct: 463 acaccttcaagatcttgttcaaggacggaggctgtggtacttttgttcctctcttcctga 522 Query: 378 acctgatcacgtcagtgcggcgccacaatcagtttgaagcccag---cctgctaccgtg- 433 ||||| | | || ||||||||| |||| ||||||||||||||| |||||| | || Sbjct: 523 acctggttgcttctgtgcggcgctacaaccagtttgaagcccagtctgctgctaacatgg 582 Query: 434 --ccccgtgtggaccccatgcaggcagcgcaaactcctgttgacgacatgatgcgccatg 491 || |||||||||||| |||| || ||||| ||||||||||| ||||||||||| |||| Sbjct: 583 caccgcgtgtggaccccctgcaagctgcgcagactcctgttgatgacatgatgcgtcatg 642 Query: 492 cgtatgtcgatccacatgatcctacca 518 ||||||| || ||| |||||||||||| Sbjct: 643 cgtatgttgacccaaatgatcctacca 669
>dbj|AK104595.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D09, full insert sequence Length = 983 Score = 375 bits (189), Expect = e-100 Identities = 350/404 (86%) Strand = Plus / Plus Query: 23 gtgcccttccacggcgagnagttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 82 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 106 gtgcccttctacggcgagatgttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 165 Query: 83 aagatcccctcggcgcccggcggtcacgcaaaaacaaagggcaccatatacctttctaac 142 ||||||||||| || || || ||||| || |||||||||||||| || ||||| || ||| Sbjct: 166 aagatcccctcagctcctggtggtcatgcgaaaacaaagggcacaatttacctgtcaaac 225 Query: 143 ataaggatggtgtttgtcgccgccaagcctattgggaatttctttgccttcgatatgcct 202 ||||||||||| ||||||||| ||||||| ||||||| |||||||| || |||||||| Sbjct: 226 ataaggatggtctttgtcgccagcaagcctgttgggaacttctttgcttttgatatgccc 285 Query: 203 ctgttgtacgtgcacggtgagaagttcaaccagccgatatttcactgcaacaatatctct 262 |||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| || || Sbjct: 286 ctgttgtatgtgcatggtgagaaattcaatcagccaatatttcactgcaacaacatatcg 345 Query: 263 ggatttgttgagccggttgttccagaaagccagaacagggctttgtactccacccacacc 322 || || |||||||||||||| ||||| | |||||||||||| ||||||| |||||||| Sbjct: 346 ggtttcgttgagccggttgtaccagagaaccagaacagggccctgtactcgacccacact 405 Query: 323 ttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccacttttcctgaacctg 382 |||||||||||||||||||| ||||| ||||| |||||||| || || ||||| |||||| Sbjct: 406 ttcaagatcttgttcaaggagggtggctgtggtacctttgttcctctcttcctaaacctg 465 Query: 383 atcacgtcagtgcggcgccacaatcagtttgaagcccagcctgc 426 | | || ||||| ||| ||||||||||||| |||||| |||| Sbjct: 466 gttgcatctgtgcgacgctacaatcagtttgaggcccagtctgc 509 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 464 actcctgttgacgacatgatgcgccatgcgtatgtcgatcc 504 ||||||||||| || |||||||| ||||||||||| ||||| Sbjct: 553 actcctgttgatgatatgatgcgtcatgcgtatgttgatcc 593
>dbj|AK061814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B04, full insert sequence Length = 989 Score = 375 bits (189), Expect = e-100 Identities = 350/404 (86%) Strand = Plus / Plus Query: 23 gtgcccttccacggcgagnagttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 82 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 146 gtgcccttctacggcgagatgttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 205 Query: 83 aagatcccctcggcgcccggcggtcacgcaaaaacaaagggcaccatatacctttctaac 142 ||||||||||| || || || ||||| || |||||||||||||| || ||||| || ||| Sbjct: 206 aagatcccctcagctcctggtggtcatgcgaaaacaaagggcacaatttacctgtcaaac 265 Query: 143 ataaggatggtgtttgtcgccgccaagcctattgggaatttctttgccttcgatatgcct 202 ||||||||||| ||||||||| ||||||| ||||||| |||||||| || |||||||| Sbjct: 266 ataaggatggtctttgtcgccagcaagcctgttgggaacttctttgcttttgatatgccc 325 Query: 203 ctgttgtacgtgcacggtgagaagttcaaccagccgatatttcactgcaacaatatctct 262 |||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| || || Sbjct: 326 ctgttgtatgtgcatggtgagaaattcaatcagccaatatttcactgcaacaacatatcg 385 Query: 263 ggatttgttgagccggttgttccagaaagccagaacagggctttgtactccacccacacc 322 || || |||||||||||||| ||||| | |||||||||||| ||||||| |||||||| Sbjct: 386 ggtttcgttgagccggttgtaccagagaaccagaacagggccctgtactcgacccacact 445 Query: 323 ttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccacttttcctgaacctg 382 |||||||||||||||||||| ||||| ||||| |||||||| || || ||||| |||||| Sbjct: 446 ttcaagatcttgttcaaggagggtggctgtggtacctttgttcctctcttcctaaacctg 505 Query: 383 atcacgtcagtgcggcgccacaatcagtttgaagcccagcctgc 426 | | || ||||| ||| ||||||||||||| |||||| |||| Sbjct: 506 gttgcatctgtgcgacgctacaatcagtttgaggcccagtctgc 549 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 464 actcctgttgacgacatgatgcgccatgcgtatgtcgatcc 504 ||||||||||| || |||||||| ||||||||||| ||||| Sbjct: 593 actcctgttgatgatatgatgcgtcatgcgtatgttgatcc 633
>gb|AY108813.1| Zea mays PCO104391 mRNA sequence Length = 907 Score = 327 bits (165), Expect = 2e-86 Identities = 423/508 (83%), Gaps = 6/508 (1%) Strand = Plus / Plus Query: 17 atgcccgtgcccttccacggcgagnagttcgtcctcgcccgcgacggcgtcgagttccac 76 ||||| ||||| ||| |||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 99 atgccggtgccgttctacggcgagatgttcgtcctcgtccgcgacggcgtcgagttccac 158 Query: 77 gtcgacaagatcccctcggcgcccggcggtcacgcaaaaacaaagggcaccatatacctt 136 |||||||||||||| || || || || ||||| | |||||||| ||||| || ||||| Sbjct: 159 gtcgacaagatcccgtcagctcctggaggtcatgtgaaaacaaaaggcacaatttacctg 218 Query: 137 tctaacataaggatggtgtttgtcgccgccaagcctattgggaatttctttgccttcgat 196 || || ||||||||||||||||| ||| ||||||| |||| || |||||||| || ||| Sbjct: 219 tccaatataaggatggtgtttgttgccagcaagcctgttggcaacttctttgcttttgat 278 Query: 197 atgcctctgttgtacgtgcacggtgagaagttcaaccagccgatatttcactgcaacaat 256 ||||| ||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct: 279 atgccactgttgtttgtgcatggtgagaagttcaatcagcccatatttcactgcaacaac 338 Query: 257 atctctggatttgttgagccggttgttccagaaagccagaacagggctttgtactccacc 316 ||||||||||| ||||| || || |||||||| | ||||||||||| ||||||| || Sbjct: 339 atctctggattcgttgaaccagtcgttccagacaatcagaacagggccctgtactcaact 398 Query: 317 cacaccttcaagatcttgttcaaggaaggtggatgtggcacctttgtgccacttttcctg 376 ||||||||||||||||||||||||||||| || ||||| || || || || || ||||| Sbjct: 399 cacaccttcaagatcttgttcaaggaaggcggctgtggtactttcgttcctctcttcctt 458 Query: 377 aacctgatcacgtcagtgcggcgccacaatcagtttgaagcccag---cctgctaccgtg 433 ||||||| | || ||||||||| ||||| |||||||||||||| |||||| | || Sbjct: 459 aacctgactgcatctgtgcggcgctacaatgagtttgaagcccagtctgctgctaacatg 518 Query: 434 ---ccccgtgtggaccccatgcaggcagcgcaaactcctgttgacgacatgatgcgccat 490 || |||||||| || |||| || ||||| |||||||| || || |||||||| ||| Sbjct: 519 gcaccgcgtgtggatcctctgcaagccgcgcagactcctgtcgatgatatgatgcgtcat 578 Query: 491 gcgtatgtcgatccacatgatcctacca 518 |||||||| || ||| |||||||||||| Sbjct: 579 gcgtatgttgacccaaatgatcctacca 606
>dbj|AK066925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092F14, full insert sequence Length = 1626 Score = 268 bits (135), Expect = 2e-68 Identities = 276/323 (85%) Strand = Plus / Plus Query: 104 ggtcacgcaaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgcc 163 ||||| || |||||||||||||| || ||||| || |||||||||||||| ||||||||| Sbjct: 925 ggtcatgcgaaaacaaagggcacaatttacctgtcaaacataaggatggtctttgtcgcc 984 Query: 164 gccaagcctattgggaatttctttgccttcgatatgcctctgttgtacgtgcacggtgag 223 ||||||| ||||||| |||||||| || |||||||| |||||||| ||||| |||||| Sbjct: 985 agcaagcctgttgggaacttctttgcttttgatatgcccctgttgtatgtgcatggtgag 1044 Query: 224 aagttcaaccagccgatatttcactgcaacaatatctctggatttgttgagccggttgtt 283 || ||||| ||||| ||||||||||||||||| || || || || |||||||||||||| Sbjct: 1045 aaattcaatcagccaatatttcactgcaacaacatatcgggtttcgttgagccggttgta 1104 Query: 284 ccagaaagccagaacagggctttgtactccacccacaccttcaagatcttgttcaaggaa 343 ||||| | |||||||||||| ||||||| |||||||| |||||||||||||||||||| Sbjct: 1105 ccagagaaccagaacagggccctgtactcgacccacactttcaagatcttgttcaaggag 1164 Query: 344 ggtggatgtggcacctttgtgccacttttcctgaacctgatcacgtcagtgcggcgccac 403 ||||| ||||| |||||||| || || ||||| |||||| | | || ||||| ||| || Sbjct: 1165 ggtggctgtggtacctttgttcctctcttcctaaacctggttgcatctgtgcgacgctac 1224 Query: 404 aatcagtttgaagcccagcctgc 426 ||||||||||| |||||| |||| Sbjct: 1225 aatcagtttgaggcccagtctgc 1247 Score = 121 bits (61), Expect = 2e-24 Identities = 69/72 (95%) Strand = Plus / Plus Query: 23 gtgcccttccacggcgagnagttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 82 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 278 gtgcccttctacggcgagatgttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 337 Query: 83 aagatcccctcg 94 |||||||||||| Sbjct: 338 aagatcccctcg 349 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 464 actcctgttgacgacatgatgcgccatgcgtatgtcgatcc 504 ||||||||||| || |||||||| ||||||||||| ||||| Sbjct: 1291 actcctgttgatgatatgatgcgtcatgcgtatgttgatcc 1331
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0065A15, complete sequence Length = 168806 Score = 121 bits (61), Expect = 2e-24 Identities = 69/72 (95%) Strand = Plus / Plus Query: 23 gtgcccttccacggcgagnagttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 82 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 144009 gtgcccttctacggcgagatgttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 144068 Query: 83 aagatcccctcg 94 |||||||||||| Sbjct: 144069 aagatcccctcg 144080 Score = 115 bits (58), Expect = 1e-22 Identities = 127/150 (84%) Strand = Plus / Plus Query: 277 ggttgttccagaaagccagaacagggctttgtactccacccacaccttcaagatcttgtt 336 |||||| ||||| | |||||||||||| ||||||| |||||||| |||||||||||||| Sbjct: 145038 ggttgtaccagagaaccagaacagggccctgtactcgacccacactttcaagatcttgtt 145097 Query: 337 caaggaaggtggatgtggcacctttgtgccacttttcctgaacctgatcacgtcagtgcg 396 |||||| ||||| ||||| |||||||| || || ||||| |||||| | | || ||||| Sbjct: 145098 caaggagggtggctgtggtacctttgttcctctcttcctaaacctggttgcatctgtgcg 145157 Query: 397 gcgccacaatcagtttgaagcccagcctgc 426 ||| ||||||||||||| |||||| |||| Sbjct: 145158 acgctacaatcagtttgaggcccagtctgc 145187 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 104 ggtcacgcaaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgcc 163 ||||| || |||||||||||||| || ||||| || |||||||||||||| ||||||||| Sbjct: 144656 ggtcatgcgaaaacaaagggcacaatttacctgtcaaacataaggatggtctttgtcgcc 144715 Query: 164 gccaagcctattgggaatttctttgccttcgatatgcc 201 ||||||| ||||||| |||||||| || |||||||| Sbjct: 144716 agcaagcctgttgggaacttctttgcttttgatatgcc 144753 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 205 gttgtacgtgcacggtgagaagttcaaccagccgatatttcactgcaacaatatctctgg 264 |||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| || || || Sbjct: 144882 gttgtatgtgcatggtgagaaattcaatcagccaatatttcactgcaacaacatatcggg 144941 Query: 265 atttgttgagccggt 279 || ||||||||||| Sbjct: 144942 tttcgttgagccggt 144956
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 121 bits (61), Expect = 2e-24 Identities = 69/72 (95%) Strand = Plus / Plus Query: 23 gtgcccttccacggcgagnagttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 82 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 19660934 gtgcccttctacggcgagatgttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 19660993 Query: 83 aagatcccctcg 94 |||||||||||| Sbjct: 19660994 aagatcccctcg 19661005 Score = 115 bits (58), Expect = 1e-22 Identities = 127/150 (84%) Strand = Plus / Plus Query: 277 ggttgttccagaaagccagaacagggctttgtactccacccacaccttcaagatcttgtt 336 |||||| ||||| | |||||||||||| ||||||| |||||||| |||||||||||||| Sbjct: 19661963 ggttgtaccagagaaccagaacagggccctgtactcgacccacactttcaagatcttgtt 19662022 Query: 337 caaggaaggtggatgtggcacctttgtgccacttttcctgaacctgatcacgtcagtgcg 396 |||||| ||||| ||||| |||||||| || || ||||| |||||| | | || ||||| Sbjct: 19662023 caaggagggtggctgtggtacctttgttcctctcttcctaaacctggttgcatctgtgcg 19662082 Query: 397 gcgccacaatcagtttgaagcccagcctgc 426 ||| ||||||||||||| |||||| |||| Sbjct: 19662083 acgctacaatcagtttgaggcccagtctgc 19662112 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 104 ggtcacgcaaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgcc 163 ||||| || |||||||||||||| || ||||| || |||||||||||||| ||||||||| Sbjct: 19661581 ggtcatgcgaaaacaaagggcacaatttacctgtcaaacataaggatggtctttgtcgcc 19661640 Query: 164 gccaagcctattgggaatttctttgccttcgatatgcc 201 ||||||| ||||||| |||||||| || |||||||| Sbjct: 19661641 agcaagcctgttgggaacttctttgcttttgatatgcc 19661678 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 205 gttgtacgtgcacggtgagaagttcaaccagccgatatttcactgcaacaatatctctgg 264 |||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| || || || Sbjct: 19661807 gttgtatgtgcatggtgagaaattcaatcagccaatatttcactgcaacaacatatcggg 19661866 Query: 265 atttgttgagccggt 279 || ||||||||||| Sbjct: 19661867 tttcgttgagccggt 19661881
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 121 bits (61), Expect = 2e-24 Identities = 69/72 (95%) Strand = Plus / Plus Query: 23 gtgcccttccacggcgagnagttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 82 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 6620 gtgcccttctacggcgagatgttcgtcctcgcccgcgacggcgtcgagttccacgtcgac 6679 Query: 83 aagatcccctcg 94 |||||||||||| Sbjct: 6680 aagatcccctcg 6691 Score = 115 bits (58), Expect = 1e-22 Identities = 127/150 (84%) Strand = Plus / Plus Query: 277 ggttgttccagaaagccagaacagggctttgtactccacccacaccttcaagatcttgtt 336 |||||| ||||| | |||||||||||| ||||||| |||||||| |||||||||||||| Sbjct: 7649 ggttgtaccagagaaccagaacagggccctgtactcgacccacactttcaagatcttgtt 7708 Query: 337 caaggaaggtggatgtggcacctttgtgccacttttcctgaacctgatcacgtcagtgcg 396 |||||| ||||| ||||| |||||||| || || ||||| |||||| | | || ||||| Sbjct: 7709 caaggagggtggctgtggtacctttgttcctctcttcctaaacctggttgcatctgtgcg 7768 Query: 397 gcgccacaatcagtttgaagcccagcctgc 426 ||| ||||||||||||| |||||| |||| Sbjct: 7769 acgctacaatcagtttgaggcccagtctgc 7798 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 104 ggtcacgcaaaaacaaagggcaccatatacctttctaacataaggatggtgtttgtcgcc 163 ||||| || |||||||||||||| || ||||| || |||||||||||||| ||||||||| Sbjct: 7267 ggtcatgcgaaaacaaagggcacaatttacctgtcaaacataaggatggtctttgtcgcc 7326 Query: 164 gccaagcctattgggaatttctttgccttcgatatgcc 201 ||||||| ||||||| |||||||| || |||||||| Sbjct: 7327 agcaagcctgttgggaacttctttgcttttgatatgcc 7364 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 205 gttgtacgtgcacggtgagaagttcaaccagccgatatttcactgcaacaatatctctgg 264 |||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| || || || Sbjct: 7493 gttgtatgtgcatggtgagaaattcaatcagccaatatttcactgcaacaacatatcggg 7552 Query: 265 atttgttgagccggt 279 || ||||||||||| Sbjct: 7553 tttcgttgagccggt 7567
>gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence Length = 95845 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 296 aacagggctttgtactccacccacaccttcaagatcttgttcaaggaaggtggatgtggc 355 ||||| || ||||||||||| || || |||||||| ||||||||||| ||||| ||||| Sbjct: 86291 aacagtgccttgtactccacacatacattcaagattttgttcaaggatggtggttgtggg 86350 Query: 356 acctttgtgcca 367 || || |||||| Sbjct: 86351 actttcgtgcca 86362 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 240 tatttcactgcaacaatatctctggatttgttgagccggt 279 |||| ||||||||||| |||||||||||||| || ||||| Sbjct: 85888 tattccactgcaacaacatctctggatttgtagatccggt 85927
>emb|AJ635174.2| Mangifera indica microsatellite DNA, locus mMiCIR012 Length = 645 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 218 ggtgagaagttcaaccagccgatatttcactgcaacaatatctctgg 264 |||||||| || |||||||| ||||||| ||||||||||| ||||| Sbjct: 537 ggtgagaaatttaaccagccagtatttcattgcaacaatatttctgg 583
>ref|NM_121206.2| Arabidopsis thaliana unknown protein AT5G11680 mRNA, complete cds Length = 1035 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 cagccgatatttcactgcaacaatat 258 ||||| |||||||||||||||||||| Sbjct: 448 cagccaatatttcactgcaacaatat 473
>gb|AY117201.1| Arabidopsis thaliana unknown protein (At5g11680) mRNA, complete cds Length = 631 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 cagccgatatttcactgcaacaatat 258 ||||| |||||||||||||||||||| Sbjct: 250 cagccaatatttcactgcaacaatat 275
>gb|AY063800.1| Arabidopsis thaliana unknown protein (At5g11680) mRNA, complete cds Length = 845 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 cagccgatatttcactgcaacaatat 258 ||||| |||||||||||||||||||| Sbjct: 448 cagccaatatttcactgcaacaatat 473
>emb|AL163814.1|ATT22P22 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P22 (ESSA project) Length = 93205 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 cagccgatatttcactgcaacaatat 258 ||||| |||||||||||||||||||| Sbjct: 39054 cagccaatatttcactgcaacaatat 39079
>gb|AY081610.1| Arabidopsis thaliana putative protein (At5g11680) mRNA, complete cds Length = 783 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 cagccgatatttcactgcaacaatat 258 ||||| |||||||||||||||||||| Sbjct: 250 cagccaatatttcactgcaacaatat 275
>gb|AY062861.1| Arabidopsis thaliana putative protein (At5g11680; T22P22_70) mRNA, complete cds Length = 1015 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 cagccgatatttcactgcaacaatat 258 ||||| |||||||||||||||||||| Sbjct: 437 cagccaatatttcactgcaacaatat 462
>emb|BX833959.1|CNS09Z62 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL86ZD02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 972 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 cagccgatatttcactgcaacaatat 258 ||||| |||||||||||||||||||| Sbjct: 381 cagccaatatttcactgcaacaatat 406
>emb|BX833543.1|CNS09Z3S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL61ZD03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 901 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 cagccgatatttcactgcaacaatat 258 ||||| |||||||||||||||||||| Sbjct: 323 cagccaatatttcactgcaacaatat 348
>gb|AC130404.8| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135653 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 320 accttcaagatcttgttcaagg 341 |||||||||||||||||||||| Sbjct: 86011 accttcaagatcttgttcaagg 85990
>gb|AY088005.1| Arabidopsis thaliana clone 403 mRNA, complete sequence Length = 1001 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 cagccgatatttcactgcaacaatat 258 ||||| |||||||||||||||||||| Sbjct: 417 cagccaatatttcactgcaacaatat 442
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 tcctcgcccgcgacggcgtcg 68 ||||||||||||||||||||| Sbjct: 181491 tcctcgcccgcgacggcgtcg 181511
>ref|XM_470501.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1859 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gccaagcctattgggaattt 183 |||||||||||||||||||| Sbjct: 1778 gccaagcctattgggaattt 1797
>gb|AC163683.4| Mus musculus BAC clone RP23-8L20 from chromosome 6, complete sequence Length = 218138 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cctttgtgccacttttcctg 376 |||||||||||||||||||| Sbjct: 132932 cctttgtgccacttttcctg 132951
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gccaagcctattgggaattt 183 |||||||||||||||||||| Sbjct: 35961752 gccaagcctattgggaattt 35961733
>gb|AC163747.4| Mus musculus BAC clone RP23-403P6 from chromosome 6, complete sequence Length = 185160 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 cctttgtgccacttttcctg 376 |||||||||||||||||||| Sbjct: 39903 cctttgtgccacttttcctg 39922
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ttcaaggaaggtggatgtgg 354 |||||||||||||||||||| Sbjct: 1576267 ttcaaggaaggtggatgtgg 1576248
>emb|AL033524.11|HS1090E8 Human DNA sequence from clone RP5-1090E8 on chromosome 1p34.1-34.3 Contains the 5' end of a novel gene, complete sequence Length = 101728 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 ccgtgtggaccccatgcagg 455 |||||||||||||||||||| Sbjct: 99235 ccgtgtggaccccatgcagg 99254
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gccaagcctattgggaattt 183 |||||||||||||||||||| Sbjct: 23263 gccaagcctattgggaattt 23244
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 cgtcctcgcccgcgacggcg 65 |||||||||||||||||||| Sbjct: 116809 cgtcctcgcccgcgacggcg 116828
>gb|AC117470.8| Homo sapiens 3 BAC RP11-529P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190630 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 accatatacctttctaacataagg 148 ||||||||||||||| |||||||| Sbjct: 72206 accatatacctttcttacataagg 72229
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gccaagcctattgggaattt 183 |||||||||||||||||||| Sbjct: 36051826 gccaagcctattgggaattt 36051807
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggcgtcgagttccacgtcg 80 |||||||||||||||||||| Sbjct: 1898569 cggcgtcgagttccacgtcg 1898588
>dbj|AK203765.1| Mus musculus cDNA, clone:Y1G0146B17, strand:unspecified Length = 364 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gcctattgggaatttctttg 188 |||||||||||||||||||| Sbjct: 302 gcctattgggaatttctttg 283
>dbj|AB001455.1| Porphyromonas gingivalis rmlA, rmlC, rmlD, rmlB genes for glucose-1-phosphate thymidylyltransferase, dTDP-4-dehydrorhamnose 3,5-epimerase, dTDP-4-dehydrorhamnose reductase, dTDP-glucose 4,6-dehydratase, complete cds Length = 5361 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 gttgttccagaaagccagaacagg 301 |||||||| ||||||||||||||| Sbjct: 832 gttgttcccgaaagccagaacagg 809
>dbj|AP002062.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T22B15 Length = 112406 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tttcactgcaacaatatctc 261 |||||||||||||||||||| Sbjct: 85610 tttcactgcaacaatatctc 85591
>dbj|AP002033.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F1M23 Length = 112684 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tttcactgcaacaatatctc 261 |||||||||||||||||||| Sbjct: 57706 tttcactgcaacaatatctc 57687
>gb|AF168792.1|AF168792 Gallid herpesvirus 1 ICP18.5 gene, partial cds; DNA binding protein, DNA polymerase, UL31 homolog, UL32 homolog, UL33 homolog, UL34 homolog, UL35 homolog, very large tegument protein, UL37 homolog, capsid assembly protein, ribonucleotide reductase large subunit, ribonucleotide reductase small subunit, virion host shutoff (VHS), and UL42 homolog genes, complete cds; and UL43 homolog gene, partial cds Length = 31424 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ctgcaacaatatctctggat 266 |||||||||||||||||||| Sbjct: 645 ctgcaacaatatctctggat 664
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 gttgttccagaaagccagaacagg 301 |||||||| ||||||||||||||| Sbjct: 1642929 gttgttcccgaaagccagaacagg 1642952
>dbj|AB070942.1| Streptomyces avermitilis polyketide-2 biosynthetic gene cluster Length = 27522 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cggcgtcgagttccacgtcg 80 |||||||||||||||||||| Sbjct: 8369 cggcgtcgagttccacgtcg 8388 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,569,901 Number of Sequences: 3902068 Number of extensions: 3569901 Number of successful extensions: 62207 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61935 Number of HSP's gapped (non-prelim): 271 length of query: 518 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 495 effective length of database: 17,143,297,704 effective search space: 8485932363480 effective search space used: 8485932363480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
