| Clone Name | bags12j12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468259.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2157 Score = 460 bits (232), Expect = e-126 Identities = 340/375 (90%), Gaps = 1/375 (0%) Strand = Plus / Plus Query: 5 tgcgtgctttggttgtgctacctacaagggnatttagcattgcaggttaaagnagttttt 64 |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 472 tgcgtgctttggttgtgctacctacaaggg-atttagcattgcaggttaaagaggttttt 530 Query: 65 gatgctattgctcctgtggtgggcttgacagtagcatcagcagttggtcaatcgtccatc 124 ||||||||||||||||| ||||||||| |||||| ||||||||||||||||| || || Sbjct: 531 gatgctattgctcctgttgtgggcttgtcagtaggctcagcagttggtcaatcatcaata 590 Query: 125 gcggatgaaatctcagatctgatcaagaagtccaaacaagagctttacccatctcttgat 184 ||||||||| | ||| |||| || ||||||| ||||||| ||||| |||| ||||||| Sbjct: 591 gcggatgaagtttcaaatcttattgagaagtctaaacaagggcttttcccaagtcttgat 650 Query: 185 gatgaatatgtcgaaatggaaccacagactaaagttgatatattggtggcaactcctgga 244 || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 651 gaagaatatatccaaatggaaccacagactaaagttgatatattggtggcaactcctgga 710 Query: 245 agattgatggatcatatcaacatgacaaaaggttttagtctggagcatcttcaatacttg 304 ||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||| || Sbjct: 711 agactgatggatcatatcagcatgacaaaaggtttcagcctggagcatcttcaatacctg 770 Query: 305 gttgttgatgagacagataggatgttgagagaggcatatcagtcctggttgccaacagtt 364 |||||||||||||| || |||||||||||||| || |||||||| ||||||||||||||| Sbjct: 771 gttgttgatgagacggacaggatgttgagagaagcttatcagtcttggttgccaacagtt 830 Query: 365 atccagtttactcgc 379 |||||| |||||||| Sbjct: 831 atccagcttactcgc 845 Score = 224 bits (113), Expect = 3e-55 Identities = 201/229 (87%), Gaps = 1/229 (0%) Strand = Plus / Plus Query: 421 aactctacttcatccattgactaccattagaagatcgggtgtcgagcgagggtttaaagg 480 ||||||||| ||||||||||||||||||||| |||||||||| ||||| || |||||||| Sbjct: 887 aactctactgcatccattgactaccattagacgatcgggtgttgagcgtggttttaaagg 946 Query: 481 taaatgctatccaagactggcaaagatagtctgctctgctacattgactcaagatcccag 540 ||||| || ||||||| |||| |||||||| | ||||| ||| ||||||||||||| || Sbjct: 947 taaatcctttccaagattggcgaagatagttttgtctgccacactgactcaagatcctag 1006 Query: 541 caaactttctcaacttgagttgcatcatcctttgctgttgaatagtgggaagaaagcgtt 600 ||| |||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||| | Sbjct: 1007 caagctttctcaacttgagttgcaacatcccttgctgttgaatagtggaaag-aagcgct 1065 Query: 601 acagaattcctgaaaagctggagtcctacaagctgatctgtacatcaaa 649 |||||||||| |||||| |||||||||||||| |||||| |||||| Sbjct: 1066 acagaattccaacaaagcttcagtcctacaagctggtctgtaaatcaaa 1114
>dbj|AK105305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-A11, full insert sequence Length = 2157 Score = 460 bits (232), Expect = e-126 Identities = 340/375 (90%), Gaps = 1/375 (0%) Strand = Plus / Plus Query: 5 tgcgtgctttggttgtgctacctacaagggnatttagcattgcaggttaaagnagttttt 64 |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 472 tgcgtgctttggttgtgctacctacaaggg-atttagcattgcaggttaaagaggttttt 530 Query: 65 gatgctattgctcctgtggtgggcttgacagtagcatcagcagttggtcaatcgtccatc 124 ||||||||||||||||| ||||||||| |||||| ||||||||||||||||| || || Sbjct: 531 gatgctattgctcctgttgtgggcttgtcagtaggctcagcagttggtcaatcatcaata 590 Query: 125 gcggatgaaatctcagatctgatcaagaagtccaaacaagagctttacccatctcttgat 184 ||||||||| | ||| |||| || ||||||| ||||||| ||||| |||| ||||||| Sbjct: 591 gcggatgaagtttcaaatcttattgagaagtctaaacaagggcttttcccaagtcttgat 650 Query: 185 gatgaatatgtcgaaatggaaccacagactaaagttgatatattggtggcaactcctgga 244 || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 651 gaagaatatatccaaatggaaccacagactaaagttgatatattggtggcaactcctgga 710 Query: 245 agattgatggatcatatcaacatgacaaaaggttttagtctggagcatcttcaatacttg 304 ||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||| || Sbjct: 711 agactgatggatcatatcagcatgacaaaaggtttcagcctggagcatcttcaatacctg 770 Query: 305 gttgttgatgagacagataggatgttgagagaggcatatcagtcctggttgccaacagtt 364 |||||||||||||| || |||||||||||||| || |||||||| ||||||||||||||| Sbjct: 771 gttgttgatgagacggacaggatgttgagagaagcttatcagtcttggttgccaacagtt 830 Query: 365 atccagtttactcgc 379 |||||| |||||||| Sbjct: 831 atccagcttactcgc 845 Score = 224 bits (113), Expect = 3e-55 Identities = 201/229 (87%), Gaps = 1/229 (0%) Strand = Plus / Plus Query: 421 aactctacttcatccattgactaccattagaagatcgggtgtcgagcgagggtttaaagg 480 ||||||||| ||||||||||||||||||||| |||||||||| ||||| || |||||||| Sbjct: 887 aactctactgcatccattgactaccattagacgatcgggtgttgagcgtggttttaaagg 946 Query: 481 taaatgctatccaagactggcaaagatagtctgctctgctacattgactcaagatcccag 540 ||||| || ||||||| |||| |||||||| | ||||| ||| ||||||||||||| || Sbjct: 947 taaatcctttccaagattggcgaagatagttttgtctgccacactgactcaagatcctag 1006 Query: 541 caaactttctcaacttgagttgcatcatcctttgctgttgaatagtgggaagaaagcgtt 600 ||| |||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||| | Sbjct: 1007 caagctttctcaacttgagttgcaacatcccttgctgttgaatagtggaaag-aagcgct 1065 Query: 601 acagaattcctgaaaagctggagtcctacaagctgatctgtacatcaaa 649 |||||||||| |||||| |||||||||||||| |||||| |||||| Sbjct: 1066 acagaattccaacaaagcttcagtcctacaagctggtctgtaaatcaaa 1114
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 295 bits (149), Expect = 9e-77 Identities = 232/260 (89%) Strand = Plus / Minus Query: 47 caggttaaagnagtttttgatgctattgctcctgtggtgggcttgacagtagcatcagca 106 |||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||| Sbjct: 33860876 caggttaaagaggtttttgatgctattgctcctgttgtgggcttgtcagtaggctcagca 33860817 Query: 107 gttggtcaatcgtccatcgcggatgaaatctcagatctgatcaagaagtccaaacaagag 166 ||||||||||| || || ||||||||| | ||| |||| || ||||||| ||||||| | Sbjct: 33860816 gttggtcaatcatcaatagcggatgaagtttcaaatcttattgagaagtctaaacaaggg 33860757 Query: 167 ctttacccatctcttgatgatgaatatgtcgaaatggaaccacagactaaagttgatata 226 |||| |||| ||||||||| |||||| || ||||||||||||||||||||||||||||| Sbjct: 33860756 cttttcccaagtcttgatgaagaatatatccaaatggaaccacagactaaagttgatata 33860697 Query: 227 ttggtggcaactcctggaagattgatggatcatatcaacatgacaaaaggttttagtctg 286 ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || ||| Sbjct: 33860696 ttggtggcaactcctggaagactgatggatcatatcagcatgacaaaaggtttcagcctg 33860637 Query: 287 gagcatcttcaatacttggt 306 ||||||||||||||| |||| Sbjct: 33860636 gagcatcttcaatacctggt 33860617 Score = 157 bits (79), Expect = 6e-35 Identities = 155/179 (86%), Gaps = 1/179 (0%) Strand = Plus / Minus Query: 457 gggtgtcgagcgagggtttaaaggtaaatgctatccaagactggcaaagatagtctgctc 516 |||||| ||||| || ||||||||||||| || ||||||| |||| |||||||| | || Sbjct: 33859957 gggtgttgagcgtggttttaaaggtaaatcctttccaagattggcgaagatagttttgtc 33859898 Query: 517 tgctacattgactcaagatcccagcaaactttctcaacttgagttgcatcatcctttgct 576 ||| ||| ||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| Sbjct: 33859897 tgccacactgactcaagatcctagcaagctttctcaacttgagttgcaacatcccttgct 33859838 Query: 577 gttgaatagtgggaagaaagcgttacagaattcctgaaaagctggagtcctacaagctg 635 |||||||||||| ||| ||||| ||||||||||| |||||| |||||||||||||| Sbjct: 33859837 gttgaatagtggaaag-aagcgctacagaattccaacaaagcttcagtcctacaagctg 33859780 Score = 103 bits (52), Expect = 7e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 304 ggttgttgatgagacagataggatgttgagagaggcatatcagtcctggttgccaacagt 363 ||||||||||||||| || |||||||||||||| || |||||||| |||||||||||||| Sbjct: 33860299 ggttgttgatgagacggacaggatgttgagagaagcttatcagtcttggttgccaacagt 33860240 Query: 364 tatccagtttactcgc 379 ||||||| |||||||| Sbjct: 33860239 tatccagcttactcgc 33860224 Score = 79.8 bits (40), Expect = 1e-11 Identities = 47/48 (97%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 5 tgcgtgctttggttgtgctacctacaagggnatttagcattgcaggtt 52 |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 33861045 tgcgtgctttggttgtgctacctacaaggg-atttagcattgcaggtt 33860999 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 421 aactctacttcatccattgactaccattagaagatcg 457 ||||||||| ||||||||||||||||||||| ||||| Sbjct: 33860182 aactctactgcatccattgactaccattagacgatcg 33860146
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 295 bits (149), Expect = 9e-77 Identities = 232/260 (89%) Strand = Plus / Minus Query: 47 caggttaaagnagtttttgatgctattgctcctgtggtgggcttgacagtagcatcagca 106 |||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||| Sbjct: 77454 caggttaaagaggtttttgatgctattgctcctgttgtgggcttgtcagtaggctcagca 77395 Query: 107 gttggtcaatcgtccatcgcggatgaaatctcagatctgatcaagaagtccaaacaagag 166 ||||||||||| || || ||||||||| | ||| |||| || ||||||| ||||||| | Sbjct: 77394 gttggtcaatcatcaatagcggatgaagtttcaaatcttattgagaagtctaaacaaggg 77335 Query: 167 ctttacccatctcttgatgatgaatatgtcgaaatggaaccacagactaaagttgatata 226 |||| |||| ||||||||| |||||| || ||||||||||||||||||||||||||||| Sbjct: 77334 cttttcccaagtcttgatgaagaatatatccaaatggaaccacagactaaagttgatata 77275 Query: 227 ttggtggcaactcctggaagattgatggatcatatcaacatgacaaaaggttttagtctg 286 ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || ||| Sbjct: 77274 ttggtggcaactcctggaagactgatggatcatatcagcatgacaaaaggtttcagcctg 77215 Query: 287 gagcatcttcaatacttggt 306 ||||||||||||||| |||| Sbjct: 77214 gagcatcttcaatacctggt 77195 Score = 157 bits (79), Expect = 6e-35 Identities = 155/179 (86%), Gaps = 1/179 (0%) Strand = Plus / Minus Query: 457 gggtgtcgagcgagggtttaaaggtaaatgctatccaagactggcaaagatagtctgctc 516 |||||| ||||| || ||||||||||||| || ||||||| |||| |||||||| | || Sbjct: 76535 gggtgttgagcgtggttttaaaggtaaatcctttccaagattggcgaagatagttttgtc 76476 Query: 517 tgctacattgactcaagatcccagcaaactttctcaacttgagttgcatcatcctttgct 576 ||| ||| ||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| Sbjct: 76475 tgccacactgactcaagatcctagcaagctttctcaacttgagttgcaacatcccttgct 76416 Query: 577 gttgaatagtgggaagaaagcgttacagaattcctgaaaagctggagtcctacaagctg 635 |||||||||||| ||| ||||| ||||||||||| |||||| |||||||||||||| Sbjct: 76415 gttgaatagtggaaag-aagcgctacagaattccaacaaagcttcagtcctacaagctg 76358 Score = 103 bits (52), Expect = 7e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 304 ggttgttgatgagacagataggatgttgagagaggcatatcagtcctggttgccaacagt 363 ||||||||||||||| || |||||||||||||| || |||||||| |||||||||||||| Sbjct: 76877 ggttgttgatgagacggacaggatgttgagagaagcttatcagtcttggttgccaacagt 76818 Query: 364 tatccagtttactcgc 379 ||||||| |||||||| Sbjct: 76817 tatccagcttactcgc 76802 Score = 79.8 bits (40), Expect = 1e-11 Identities = 47/48 (97%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 5 tgcgtgctttggttgtgctacctacaagggnatttagcattgcaggtt 52 |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 77623 tgcgtgctttggttgtgctacctacaaggg-atttagcattgcaggtt 77577 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 421 aactctacttcatccattgactaccattagaagatcg 457 ||||||||| ||||||||||||||||||||| ||||| Sbjct: 76760 aactctactgcatccattgactaccattagacgatcg 76724
>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_E04 Length = 133621 Score = 295 bits (149), Expect = 9e-77 Identities = 232/260 (89%) Strand = Plus / Minus Query: 47 caggttaaagnagtttttgatgctattgctcctgtggtgggcttgacagtagcatcagca 106 |||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||| Sbjct: 19839 caggttaaagaggtttttgatgctattgctcctgttgtgggcttgtcagtaggctcagca 19780 Query: 107 gttggtcaatcgtccatcgcggatgaaatctcagatctgatcaagaagtccaaacaagag 166 ||||||||||| || || ||||||||| | ||| |||| || ||||||| ||||||| | Sbjct: 19779 gttggtcaatcatcaatagcggatgaagtttcaaatcttattgagaagtctaaacaaggg 19720 Query: 167 ctttacccatctcttgatgatgaatatgtcgaaatggaaccacagactaaagttgatata 226 |||| |||| ||||||||| |||||| || ||||||||||||||||||||||||||||| Sbjct: 19719 cttttcccaagtcttgatgaagaatatatccaaatggaaccacagactaaagttgatata 19660 Query: 227 ttggtggcaactcctggaagattgatggatcatatcaacatgacaaaaggttttagtctg 286 ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || ||| Sbjct: 19659 ttggtggcaactcctggaagactgatggatcatatcagcatgacaaaaggtttcagcctg 19600 Query: 287 gagcatcttcaatacttggt 306 ||||||||||||||| |||| Sbjct: 19599 gagcatcttcaatacctggt 19580 Score = 157 bits (79), Expect = 6e-35 Identities = 155/179 (86%), Gaps = 1/179 (0%) Strand = Plus / Minus Query: 457 gggtgtcgagcgagggtttaaaggtaaatgctatccaagactggcaaagatagtctgctc 516 |||||| ||||| || ||||||||||||| || ||||||| |||| |||||||| | || Sbjct: 18920 gggtgttgagcgtggttttaaaggtaaatcctttccaagattggcgaagatagttttgtc 18861 Query: 517 tgctacattgactcaagatcccagcaaactttctcaacttgagttgcatcatcctttgct 576 ||| ||| ||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| Sbjct: 18860 tgccacactgactcaagatcctagcaagctttctcaacttgagttgcaacatcccttgct 18801 Query: 577 gttgaatagtgggaagaaagcgttacagaattcctgaaaagctggagtcctacaagctg 635 |||||||||||| ||| ||||| ||||||||||| |||||| |||||||||||||| Sbjct: 18800 gttgaatagtggaaag-aagcgctacagaattccaacaaagcttcagtcctacaagctg 18743 Score = 103 bits (52), Expect = 7e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 304 ggttgttgatgagacagataggatgttgagagaggcatatcagtcctggttgccaacagt 363 ||||||||||||||| || |||||||||||||| || |||||||| |||||||||||||| Sbjct: 19262 ggttgttgatgagacggacaggatgttgagagaagcttatcagtcttggttgccaacagt 19203 Query: 364 tatccagtttactcgc 379 ||||||| |||||||| Sbjct: 19202 tatccagcttactcgc 19187 Score = 79.8 bits (40), Expect = 1e-11 Identities = 47/48 (97%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 5 tgcgtgctttggttgtgctacctacaagggnatttagcattgcaggtt 52 |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 20008 tgcgtgctttggttgtgctacctacaaggg-atttagcattgcaggtt 19962 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 421 aactctacttcatccattgactaccattagaagatcg 457 ||||||||| ||||||||||||||||||||| ||||| Sbjct: 19145 aactctactgcatccattgactaccattagacgatcg 19109
>ref|XM_392069.2| PREDICTED: Apis mellifera similar to ENSANGP00000017814 (LOC408524), mRNA Length = 2743 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 228 tggtggcaactcctggaagattgatggat 256 |||||||||||||||||||||| |||||| Sbjct: 1700 tggtggcaactcctggaagattaatggat 1728
>emb|Y11154.1|ATDEADBLH Arabidopsis thaliana mRNA for DEAD box-like RNA helicase, partial Length = 1573 Score = 48.1 bits (24), Expect = 0.037 Identities = 38/43 (88%) Strand = Plus / Plus Query: 36 atttagcattgcaggttaaagnagtttttgatgctattgctcc 78 ||||||| ||||||||||||| || ||||||||||| ||||| Sbjct: 128 atttagccttgcaggttaaagatgtatttgatgctatagctcc 170
>gb|AC127376.3| Mus musculus BAC clone RP23-49A4 from chromosome 6, complete sequence Length = 204528 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 293 cttcaatacttggttgttgatg 314 |||||||||||||||||||||| Sbjct: 101664 cttcaatacttggttgttgatg 101685
>gb|AC112633.6| Rattus norvegicus 11 BAC CH230-200K21 (Children's Hospital Oakland Research Institute) complete sequence Length = 230130 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 gacagataggatgttgagaga 336 ||||||||||||||||||||| Sbjct: 228423 gacagataggatgttgagaga 228443
>ref|NM_006043.1| Homo sapiens heparan sulfate (glucosamine) 3-O-sulfotransferase 2 (HS3ST2), mRNA Length = 1968 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 545 ctttctcaacttgagttgcatcatc 569 ||||| ||||||||||||||||||| Sbjct: 1282 ctttcccaacttgagttgcatcatc 1306
>gb|AC002287.1|HUAC002287 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-237H1 ~complete genomic sequence, complete sequence Length = 188636 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 545 ctttctcaacttgagttgcatcatc 569 ||||| ||||||||||||||||||| Sbjct: 125540 ctttcccaacttgagttgcatcatc 125516
>gb|AY359095.2| Homo sapiens clone DNA97013 HS3ST2 (UNQ2442) mRNA, complete cds Length = 2810 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 545 ctttctcaacttgagttgcatcatc 569 ||||| ||||||||||||||||||| Sbjct: 1645 ctttcccaacttgagttgcatcatc 1669
>emb|CR620513.1| full-length cDNA clone CS0DI084YL16 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2266 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 545 ctttctcaacttgagttgcatcatc 569 ||||| ||||||||||||||||||| Sbjct: 1615 ctttcccaacttgagttgcatcatc 1639
>gb|AF105375.1|AF105375 Homo sapiens heparan sulfate D-glucosaminyl 3-O-sulfotransferase-2 (3OST2) mRNA, 3OST2-2 allele, complete cds Length = 1968 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 545 ctttctcaacttgagttgcatcatc 569 ||||| ||||||||||||||||||| Sbjct: 1282 ctttcccaacttgagttgcatcatc 1306
>gb|AF105374.1|AF105374 Homo sapiens heparan sulfate D-glucosaminyl 3-O-sulfotransferase-2 (3OST2) mRNA, 3OST2-1 allele, complete cds Length = 1968 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 545 ctttctcaacttgagttgcatcatc 569 ||||| ||||||||||||||||||| Sbjct: 1282 ctttcccaacttgagttgcatcatc 1306
>gb|AC130450.3| Homo sapiens chromosome 16 clone CTA-237H1, complete sequence Length = 183842 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 545 ctttctcaacttgagttgcatcatc 569 ||||| ||||||||||||||||||| Sbjct: 120746 ctttcccaacttgagttgcatcatc 120722
>gb|AY186728.1| Gallus gallus bcl-2 related anti-apoptotic protein (NR13) gene, complete cds Length = 9471 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 571 tttgctgttgaatagtgggaagaaa 595 |||||||||||| |||||||||||| Sbjct: 1196 tttgctgttgaagagtgggaagaaa 1220
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 gcaactcctggaagattgatggatcatat 261 ||||||||||||||| | ||||||||||| Sbjct: 3151064 gcaactcctggaagaataatggatcatat 3151036
>dbj|AB209794.1| Homo sapiens mRNA for heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2 variant protein Length = 1399 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 545 ctttctcaacttgagttgcatcatc 569 ||||| ||||||||||||||||||| Sbjct: 1336 ctttcccaacttgagttgcatcatc 1360
>ref|NM_117677.3| Arabidopsis thaliana ATRH1; ATP-dependent helicase AT4G15850 (ATRH1) mRNA, complete cds Length = 1866 Score = 40.1 bits (20), Expect = 9.0 Identities = 37/43 (86%) Strand = Plus / Plus Query: 36 atttagcattgcaggttaaagnagtttttgatgctattgctcc 78 ||||||| ||||||||||||| || |||||||| || ||||| Sbjct: 441 atttagccttgcaggttaaagatgtatttgatgcaatagctcc 483
>ref|XM_550287.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2864 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 tggtggcaactcctggaagattga 251 |||| ||||||||||||||||||| Sbjct: 1285 tggttgcaactcctggaagattga 1308
>ref|XM_550286.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2127 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 tggtggcaactcctggaagattga 251 |||| ||||||||||||||||||| Sbjct: 917 tggttgcaactcctggaagattga 940
>gb|AC097087.13| Rattus norvegicus BAC CH230-140P4 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 166595 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 tctacttcatccattgacta 443 |||||||||||||||||||| Sbjct: 70138 tctacttcatccattgacta 70157
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 actcaagatcccagcaaact 546 |||||||||||||||||||| Sbjct: 120937 actcaagatcccagcaaact 120918
>ref|XM_708605.1| Candida albicans SC5314 hypothetical protein (CaO19.8651), mRNA Length = 585 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 caatacttggttgttgatga 315 |||||||||||||||||||| Sbjct: 304 caatacttggttgttgatga 285
>ref|XM_708560.1| Candida albicans SC5314 hypothetical protein (CaO19.1049), mRNA Length = 585 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 caatacttggttgttgatga 315 |||||||||||||||||||| Sbjct: 304 caatacttggttgttgatga 285
>gb|AC157608.10| Mus musculus chromosome 5, clone RP23-343F16, complete sequence Length = 204556 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gaactctacttcatccattg 439 |||||||||||||||||||| Sbjct: 100690 gaactctacttcatccattg 100709
>gb|AY814057.1| Schistosoma japonicum SJCHGC01831 protein mRNA, complete cds Length = 2269 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gatgatgaatatgtcgaaat 201 |||||||||||||||||||| Sbjct: 139 gatgatgaatatgtcgaaat 158
>gb|AC125024.6| Mus musculus chromosome 5, clone RP24-320B23, complete sequence Length = 192305 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 gaactctacttcatccattg 439 |||||||||||||||||||| Sbjct: 160828 gaactctacttcatccattg 160809
>gb|AY072082.1| Arabidopsis thaliana At4g15850 mRNA sequence Length = 1865 Score = 40.1 bits (20), Expect = 9.0 Identities = 37/43 (86%) Strand = Plus / Plus Query: 36 atttagcattgcaggttaaagnagtttttgatgctattgctcc 78 ||||||| ||||||||||||| || |||||||| || ||||| Sbjct: 439 atttagccttgcaggttaaagatgtatttgatgcaatagctcc 481
>emb|AL845496.5| Mouse DNA sequence from clone RP23-245J21 on chromosome 4 Contains part of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 187964 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ttttgatgctattgctcctgtggt 84 |||||||||||||||| ||||||| Sbjct: 36405 ttttgatgctattgctactgtggt 36428
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 caagctgatctgtacatcaa 648 |||||||||||||||||||| Sbjct: 2052730 caagctgatctgtacatcaa 2052749
>emb|BX255912.10| Zebrafish DNA sequence from clone CH211-267H23, complete sequence Length = 178425 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ctggaagattgatggatcat 259 |||||||||||||||||||| Sbjct: 167473 ctggaagattgatggatcat 167454
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 actcaagatcccagcaaact 546 |||||||||||||||||||| Sbjct: 603538 actcaagatcccagcaaact 603519
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 tggtggcaactcctggaagattga 251 |||| ||||||||||||||||||| Sbjct: 3715225 tggttgcaactcctggaagattga 3715202
>emb|BX826445.1|CNS0A3B1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1776 Score = 40.1 bits (20), Expect = 9.0 Identities = 37/43 (86%) Strand = Plus / Plus Query: 36 atttagcattgcaggttaaagnagtttttgatgctattgctcc 78 ||||||| ||||||||||||| || |||||||| || ||||| Sbjct: 407 atttagccttgcaggttaaagatgtatttgatgcaatagctcc 449
>emb|BX828250.1|CNS0A2ZB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZE08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1793 Score = 40.1 bits (20), Expect = 9.0 Identities = 37/43 (86%) Strand = Plus / Plus Query: 36 atttagcattgcaggttaaagnagtttttgatgctattgctcc 78 ||||||| ||||||||||||| || |||||||| || ||||| Sbjct: 419 atttagccttgcaggttaaagatgtatttgatgcaatagctcc 461
>emb|BX828160.1|CNS0A2X9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH58ZE08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1789 Score = 40.1 bits (20), Expect = 9.0 Identities = 37/43 (86%) Strand = Plus / Plus Query: 36 atttagcattgcaggttaaagnagtttttgatgctattgctcc 78 ||||||| ||||||||||||| || |||||||| || ||||| Sbjct: 404 atttagccttgcaggttaaagatgtatttgatgcaatagctcc 446
>emb|BX827970.1|CNS0A2ZQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH40ZE10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1770 Score = 40.1 bits (20), Expect = 9.0 Identities = 37/43 (86%) Strand = Plus / Plus Query: 36 atttagcattgcaggttaaagnagtttttgatgctattgctcc 78 ||||||| ||||||||||||| || |||||||| || ||||| Sbjct: 402 atttagccttgcaggttaaagatgtatttgatgcaatagctcc 444
>emb|BX827963.1|CNS0A2Y4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH40ZB10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1774 Score = 40.1 bits (20), Expect = 9.0 Identities = 37/43 (86%) Strand = Plus / Plus Query: 36 atttagcattgcaggttaaagnagtttttgatgctattgctcc 78 ||||||| ||||||||||||| || |||||||| || ||||| Sbjct: 404 atttagccttgcaggttaaagatgtatttgatgcaatagctcc 446
>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence Length = 93234 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 acttgagttgcatcatcctt 572 |||||||||||||||||||| Sbjct: 39221 acttgagttgcatcatcctt 39240
>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0583G08 Length = 135295 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 tggtggcaactcctggaagattga 251 |||| ||||||||||||||||||| Sbjct: 123705 tggttgcaactcctggaagattga 123682
>emb|BX571798.5| Zebrafish DNA sequence from clone DKEY-199I24 in linkage group 18, complete sequence Length = 108129 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 638 ctgtacatcaaacattaagc 657 |||||||||||||||||||| Sbjct: 13323 ctgtacatcaaacattaagc 13304 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 638 ctgtacatcaaacattaagc 657 |||||||||||||||||||| Sbjct: 4119 ctgtacatcaaacattaagc 4100
>gb|AY810620.1| Schistosoma japonicum clone SJCHGC01832 unknown mRNA Length = 716 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gatgatgaatatgtcgaaat 201 |||||||||||||||||||| Sbjct: 129 gatgatgaatatgtcgaaat 148
>dbj|AK100326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079L21, full insert sequence Length = 2864 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 tggtggcaactcctggaagattga 251 |||| ||||||||||||||||||| Sbjct: 1285 tggttgcaactcctggaagattga 1308
>dbj|AK068437.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156H21, full insert sequence Length = 2120 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 actcaagatcccagcaaact 546 |||||||||||||||||||| Sbjct: 398 actcaagatcccagcaaact 379
>gb|AC102401.11| Mus musculus chromosome 1, clone RP24-257D18, complete sequence Length = 166242 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 acttggttgttgatgagaca 319 |||||||||||||||||||| Sbjct: 15738 acttggttgttgatgagaca 15757
>gb|AC153790.10| Mus musculus chromosome 1, clone RP23-424F11, complete sequence Length = 189707 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 acttggttgttgatgagaca 319 |||||||||||||||||||| Sbjct: 168780 acttggttgttgatgagaca 168799
>gb|AC153541.4| Mus musculus 10 BAC RP23-80P5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222655 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 gaattcctgaaaagctggag 623 |||||||||||||||||||| Sbjct: 85789 gaattcctgaaaagctggag 85808
>emb|AL831792.6| Mouse DNA sequence from clone RP23-379L17 on chromosome 4, complete sequence Length = 169747 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 accacagactaaagttgata 224 |||||||||||||||||||| Sbjct: 112881 accacagactaaagttgata 112862 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,290,450 Number of Sequences: 3902068 Number of extensions: 5290450 Number of successful extensions: 97260 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97013 Number of HSP's gapped (non-prelim): 237 length of query: 659 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 636 effective length of database: 17,143,297,704 effective search space: 10903137339744 effective search space used: 10903137339744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)