ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags12j11 |
|---|---|
| Clone Library Name | barley_pub |
>EXT1_CAEEL (O01704) Multiple exostoses homolog 1 (Related to mammalian RIB| protein 1) Length = 378 Score = 43.1 bits (100), Expect = 6e-04 Identities = 20/49 (40%), Positives = 30/49 (61%) Frame = +2 Query: 425 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI 571 Y E + + FCL P G S R +E + GC+PV+I+D +LPF++ I Sbjct: 258 YDELLANSTFCLVPRGRRLGSFRFLETLRSGCVPVVISDSWILPFSETI 306
>EXT1_DROME (Q9V730) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Protein| tout-velu) Length = 760 Score = 43.1 bits (100), Expect = 6e-04 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +2 Query: 368 WENFKNNPLFDISTDHPPTYYEDM-QRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 544 W ++N + + ++ YE + Q + FCL P G S R +EA+ GCIPV++++ Sbjct: 301 WRELQDNRCDEDNREYDRYDYETLLQNSTFCLVPRGRRLGSFRFLEALQAGCIPVLLSNA 360 Query: 545 IVLPFADAI 571 VLPF I Sbjct: 361 WVLPFESKI 369
>EXT1_MOUSE (P97464) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +2 Query: 368 WENFKNNPLFDISTDHPPTYYEDM-QRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 544 W+ K++ +T++ Y +M A FCL P G S R +EA+ C+PV++++ Sbjct: 304 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 363 Query: 545 IVLPFADAI 571 LPF++ I Sbjct: 364 WELPFSEVI 372
>EXT1_HUMAN (Q16394) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT1) (Multiple exostoses protein Length = 746 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +2 Query: 368 WENFKNNPLFDISTDHPPTYYEDM-QRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 544 W+ K++ +T++ Y +M A FCL P G S R +EA+ C+PV++++ Sbjct: 304 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 363 Query: 545 IVLPFADAI 571 LPF++ I Sbjct: 364 WELPFSEVI 372
>EXT1_CRIGR (Q9JK82) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Heparan sulfate| copolymerase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +2 Query: 368 WENFKNNPLFDISTDHPPTYYEDM-QRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 544 W+ K++ +T++ Y +M A FCL P G S R +EA+ C+PV++++ Sbjct: 304 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 363 Query: 545 IVLPFADAI 571 LPF++ I Sbjct: 364 WELPFSEVI 372
>EXT1C_BRARE (Q5IGR6) Exostosin-1c (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1c) (Multiple exostoses protein 1 homolog c) Length = 737 Score = 39.7 bits (91), Expect = 0.006 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%) Frame = +2 Query: 368 WENFKNNPLFDISTDHPPTYYED------MQRAIFCLCPLGWAPWSPRLVEAVVFGCIPV 529 WE K D DH YE + + FCL P G S R +E++ CIPV Sbjct: 296 WEKHK-----DARCDHDNQEYERFDYQELLHNSTFCLVPRGRRLGSFRFLESLQAACIPV 350 Query: 530 IIADDIVLPFADAI 571 ++++ LPF+D I Sbjct: 351 LLSNGWELPFSDVI 364
>EXT2_BOVIN (O77783) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (HS-polymerase) (HS-POL) (Multiple exostoses protein 2 homolog) Length = 718 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/49 (38%), Positives = 28/49 (57%) Frame = +2 Query: 425 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI 571 Y + +Q A FC+ G L + + GC+PVIIAD VLPF++ + Sbjct: 308 YPQVLQEATFCMVLRGARLGQAVLSDVLRAGCVPVIIADSYVLPFSEVL 356
>EXT2_HUMAN (Q93063) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT2) (Multiple exostoses protein Length = 718 Score = 38.1 bits (87), Expect = 0.018 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +2 Query: 425 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI 571 Y + +Q A FC+ G L + + GC+PV+IAD +LPF++ + Sbjct: 308 YPQVLQEATFCVVLRGARLGQAVLSDVLQAGCVPVVIADSYILPFSEVL 356
>EXT1B_BRARE (Q5IGR7) Exostosin-1b (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1b) (Multiple exostoses protein 1 homolog b) Length = 741 Score = 38.1 bits (87), Expect = 0.018 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +2 Query: 425 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI 571 Y E + + FCL P G S R +EA+ C+PV++++ LPF++ I Sbjct: 319 YREMLHNSTFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPFSEVI 367
>EXT1A_BRARE (Q5IGR8) Exostosin-1a (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1a) (Multiple exostoses protein 1 homolog a) Length = 730 Score = 37.7 bits (86), Expect = 0.023 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +2 Query: 425 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI 571 Y E + + FCL P G S R +EA+ C+PV++++ LPF++ I Sbjct: 308 YKEMLHNSTFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPFSEII 356
>EXT2_DROME (Q9Y169) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225) (Protein sister| of tout-velu) Length = 717 Score = 37.4 bits (85), Expect = 0.031 Identities = 20/45 (44%), Positives = 23/45 (51%) Frame = +2 Query: 437 MQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI 571 + R FCL P LVE + CIPVI D+ VLPF D I Sbjct: 312 LSRGKFCLLGRSLRMGQPDLVEIMSQHCIPVIAVDNYVLPFEDVI 356
>EXT2_MOUSE (P70428) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses protein 2 homolog) Length = 718 Score = 34.3 bits (77), Expect = 0.26 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +2 Query: 425 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI 571 Y + +Q A FC L + + GC+PV+IAD +LPF++ + Sbjct: 308 YPQVLQEATFCTVLRRARLGQAVLSDVLQAGCVPVVIADSYILPFSEVL 356
>EXTL1_MOUSE (Q9JKV7) Exostosin-like 1 (EC 2.4.1.224)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L) (Multiple exostosis-like protein) Length = 669 Score = 32.3 bits (72), Expect = 0.98 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +2 Query: 431 EDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI 571 E + A FCL P G + ++A+ GCIPV+++ LPF++ I Sbjct: 259 ETLPNATFCLIP-GHRSATSCFLQALQAGCIPVLLSPRWELPFSEVI 304
>EXTL1_HUMAN (Q92935) Exostosin-like 1 (EC 2.4.1.224)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L) (Multiple exostosis-like protein) Length = 676 Score = 32.0 bits (71), Expect = 1.3 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +2 Query: 431 EDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI 571 E + A FCL + R ++A+ GCIPV+++ LPF++ I Sbjct: 265 ETLPNATFCLISGHRPEAASRFLQALQAGCIPVLLSPRWELPFSEVI 311
>NFI_METKA (Q8X260) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)| (Deoxyribonuclease V) (DNase V) Length = 229 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = -3 Query: 472 PQRAQTENGALHVLVVGGWVVRRDVEQRVVLEVLPHRCTGASCIVTTLRIIR 317 P R +H V G++VR D E R V+ HRC + TLR++R Sbjct: 145 PSRIGDTTPLVHRGEVVGYLVRTDAEARPVVVSPGHRCNLEDAVRWTLRLVR 196
>GPR56_GORGO (Q50DM6) G-protein coupled receptor 56 precursor| Length = 687 Score = 31.2 bits (69), Expect = 2.2 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Frame = +2 Query: 32 YWNRXAGADHFFVVPHDF--------GACFHYQEEKAIERGILPLLRRATLVQTFGQKDH 187 YWNR AG H HDF CF +QEE + PLL AT V ++ + Sbjct: 93 YWNRHAGRLHLLYGKHDFLLSDKASSLLCFQHQEESLAQGP--PLL--ATSVTSWWSPQN 148 Query: 188 VCL-KEGSINIPPYAPP 235 V L S ++PP Sbjct: 149 VSLPSAASFTFSFHSPP 165
>AFSA_STRGR (P18394) Probable A-factor biosynthesis enzyme| Length = 301 Score = 30.4 bits (67), Expect = 3.7 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 128 PVQSPFLPDNGSMPQSHAARRRNDQHLLXGSNRASVYEI 12 PV+ LP+ +P S A R R + +L G+ R V+E+ Sbjct: 165 PVEGISLPETAPVPASPAGRARVEDVVLSGTGREGVWEL 203
>APBA1_RAT (O35430) Amyloid beta A4 precursor protein-binding family A member| 1 (Neuron-specific X11 protein) (Neuronal Munc18-1-interacting protein 1) (Mint-1) (Adapter protein X11alpha) Length = 839 Score = 30.0 bits (66), Expect = 4.9 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = -3 Query: 520 APEHHRLHEAGAPWRPPQRAQTENG 446 APE HR H A P PPQ + E G Sbjct: 49 APEDHRAHPAPPPPPPPQEEEEERG 73
>GPR56_PONPY (Q50DM5) G-protein coupled receptor 56 precursor| Length = 687 Score = 30.0 bits (66), Expect = 4.9 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 8/82 (9%) Frame = +2 Query: 32 YWNRXAGADHFFVVPHDF--------GACFHYQEEKAIERGILPLLRRATLVQTFGQKDH 187 YWNR AG H HDF CF +QEE + PLL AT V ++ + Sbjct: 93 YWNRHAGRLHLLYGKHDFLLSDKASSLLCFQHQEESLAQGP--PLL--ATSVTSWWSPQN 148 Query: 188 VCLKEGSINIPPYAPPQKMKTH 253 + L + + P H Sbjct: 149 ISLPSAASFTFSFHSPSHTAAH 170
>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) (hNotch4) [Contains: Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 2003 Score = 24.6 bits (52), Expect(2) = 5.6 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +1 Query: 343 CKRRPCIGVGELQEQPSVRH 402 C+ PC G+ Q+QP H Sbjct: 555 CRSSPCANGGQCQDQPGAFH 574 Score = 23.5 bits (49), Expect(2) = 5.6 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +2 Query: 434 DMQRAIFCLCPLGW 475 D+ A FCLCP G+ Sbjct: 606 DLPGAFFCLCPSGF 619
>KLOT_MACFA (Q8WP17) Klotho precursor (EC 3.2.1.31) [Contains: Klotho peptide]| Length = 1014 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%) Frame = +2 Query: 293 FRGLFYD--------TANDPEGGYYARGARASVWENFKNNPL 394 F+G F D A EGG+ G AS+W+ F ++PL Sbjct: 59 FQGTFPDGFLWAVGSAAYQTEGGWQQHGKGASIWDTFTHHPL 100
>KLOT_HUMAN (Q9UEF7) Klotho precursor (EC 3.2.1.31) [Contains: Klotho peptide]| Length = 1012 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%) Frame = +2 Query: 293 FRGLFYD--------TANDPEGGYYARGARASVWENFKNNPL 394 F+G F D A EGG+ G AS+W+ F ++PL Sbjct: 57 FQGTFPDGFLWAVGSAAYQTEGGWQQHGKGASIWDTFTHHPL 98
>DNMBP_MOUSE (Q6TXD4) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1580 Score = 29.6 bits (65), Expect = 6.4 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = +2 Query: 140 LLRRATLVQTFGQKDHVCLKEGSINIPPYAPPQKMKTHLVPPETPRSIFVYFRGLFYDTA 319 ++RR +++ + +KD V + S ++P A P++ KT PP PR+ L D + Sbjct: 572 IVRRFSIMDFYSEKDIV--RGSSNSLPSQAFPERRKTLRPPPPRPRTPTPISSHLLVDQS 629 Query: 320 NDPEGGYYARGAR 358 P R +R Sbjct: 630 PKPVPTLVVRPSR 642
>RTXE_DROME (Q9NBX4) Probable RNA-directed DNA polymerase from transposon| X-element (EC 2.7.7.49) (Reverse transcriptase) Length = 908 Score = 29.3 bits (64), Expect = 8.3 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +2 Query: 245 KTHLVPPETPRSIFVYFRGLFYDTANDPEGGYYARGARASVWENFKNNPLFDIST 409 +TH ETP+ G TANDP GG GA + + + PL I+T Sbjct: 37 ETHCKGAETPKLF-----GFVAYTANDPSGGNAKGGAAILIKNSLAHFPLTPIAT 86
>ECA3_ARATH (Q9SY55) Calcium-transporting ATPase 3, endoplasmic reticulum-type| (EC 3.6.3.8) Length = 998 Score = 29.3 bits (64), Expect = 8.3 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 449 IFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIV 550 +F + PL WA W+ AV++ PVII D+++ Sbjct: 942 LFSVTPLSWAEWT-----AVLYLSFPVIIIDELL 970
>SPT6H_CAEBR (Q93148) Suppressor of Ty 6 homolog (Abnormal embryogenesis protein| 5) Length = 1521 Score = 29.3 bits (64), Expect = 8.3 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -2 Query: 122 QSPFLPDNGSMPQSHAARRRNDQHLLXGS 36 + F+ D+G P+ H R R D+H+ G+ Sbjct: 169 EDDFIEDDGDAPRRHRKRHRGDEHIPEGA 197 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,200,110 Number of Sequences: 219361 Number of extensions: 2136075 Number of successful extensions: 5676 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5372 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5673 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
