| Clone Name | rbaal9h24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009401.1| Triticum aestivum clone wlm96.pk045.d23:fis, full insert mRNA sequence Length = 1149 Score = 218 bits (110), Expect = 3e-54 Identities = 129/134 (96%), Gaps = 1/134 (0%) Strand = Plus / Minus Query: 1 gtttatttcttaatacaacactacattactgtgagcttaacaagtcagattcactggctg 60 |||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 920 gtttatttcttagtacaa-actacattactgtgagctcaacaagtcagattcactggctg 862 Query: 61 ctagattcgtcatgctccggctgcatctggttcagcacaaaagctccctcaaggttctta 120 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 861 ctagattcgtcatgctctggctgcatctggttcagcacaaaagctccctcgaggttctta 802 Query: 121 tgcacctcggcttt 134 |||||||||||||| Sbjct: 801 tgcacctcggcttt 788
>dbj|AB223039.1| Triticum aestivum TaMDC1 mRNA for multidomain cystatin, complete cds Length = 1031 Score = 218 bits (110), Expect = 3e-54 Identities = 129/134 (96%), Gaps = 1/134 (0%) Strand = Plus / Minus Query: 1 gtttatttcttaatacaacactacattactgtgagcttaacaagtcagattcactggctg 60 |||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 835 gtttatttcttagtacaa-actacattactgtgagctcaacaagtcagattcactggctg 777 Query: 61 ctagattcgtcatgctccggctgcatctggttcagcacaaaagctccctcaaggttctta 120 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 776 ctagattcgtcatgctctggctgcatctggttcagcacaaaagctccctcgaggttctta 717 Query: 121 tgcacctcggcttt 134 |||||||||||||| Sbjct: 716 tgcacctcggcttt 703
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 5e-13 Identities = 74/85 (87%) Strand = Plus / Plus Query: 50 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 109 ||||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || | Sbjct: 9324918 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 9324977 Query: 110 caaggttcttatgcacctcggcttt 134 |||||||||| || ||||||||||| Sbjct: 9324978 caaggttcttgtggacctcggcttt 9325002
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0667A10 Length = 152237 Score = 81.8 bits (41), Expect = 5e-13 Identities = 74/85 (87%) Strand = Plus / Plus Query: 50 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 109 ||||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || | Sbjct: 101512 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 101571 Query: 110 caaggttcttatgcacctcggcttt 134 |||||||||| || ||||||||||| Sbjct: 101572 caaggttcttgtggacctcggcttt 101596
>dbj|AK119511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C04, full insert sequence Length = 1095 Score = 81.8 bits (41), Expect = 5e-13 Identities = 74/85 (87%) Strand = Plus / Minus Query: 50 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 109 ||||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || | Sbjct: 852 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 793 Query: 110 caaggttcttatgcacctcggcttt 134 |||||||||| || ||||||||||| Sbjct: 792 caaggttcttgtggacctcggcttt 768
>dbj|AK104155.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B08, full insert sequence Length = 1023 Score = 81.8 bits (41), Expect = 5e-13 Identities = 74/85 (87%) Strand = Plus / Minus Query: 50 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 109 ||||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || | Sbjct: 750 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 691 Query: 110 caaggttcttatgcacctcggcttt 134 |||||||||| || ||||||||||| Sbjct: 690 caaggttcttgtggacctcggcttt 666
>dbj|AK073275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025K21, full insert sequence Length = 1095 Score = 81.8 bits (41), Expect = 5e-13 Identities = 74/85 (87%) Strand = Plus / Minus Query: 50 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 109 ||||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || | Sbjct: 847 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 788 Query: 110 caaggttcttatgcacctcggcttt 134 |||||||||| || ||||||||||| Sbjct: 787 caaggttcttgtggacctcggcttt 763
>ref|NM_188046.1| Oryza sativa (japonica cultivar-group), Ozsa8466 predicted mRNA Length = 753 Score = 79.8 bits (40), Expect = 2e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 51 tcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccctc 110 |||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || || Sbjct: 753 tcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgccccttc 694 Query: 111 aaggttcttatgcacctcggcttt 134 ||||||||| || ||||||||||| Sbjct: 693 aaggttcttgtggacctcggcttt 670
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ttcgtcatgctccggctgca 85 |||||||||||||||||||| Sbjct: 3163640 ttcgtcatgctccggctgca 3163621
>gb|AC149789.1| Pan troglodytes BAC clone CH251-56H2 from Y, complete sequence Length = 172440 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 ttaatacaacactacattactgt 32 ||||| ||||||||||||||||| Sbjct: 13795 ttaattcaacactacattactgt 13817
>gb|AC126678.3| Mus musculus BAC clone RP24-231D7 from chromosome 13, complete sequence Length = 150512 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 ttaatacaacactacattactgt 32 ||||||||| ||||||||||||| Sbjct: 108570 ttaatacaatactacattactgt 108548
>gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, complete sequence Length = 176345 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 ttaatacaacactacattactgt 32 ||||| ||||||||||||||||| Sbjct: 114234 ttaattcaacactacattactgt 114256
>emb|AL390065.20| Human DNA sequence from clone RP11-520M5 on chromosome 4, complete sequence Length = 157119 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 tttatttcttaatacaaca 20 ||||||||||||||||||| Sbjct: 65557 tttatttcttaatacaaca 65539
>dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, complete sequence Length = 219969 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 ttaatacaacactacattactgt 32 ||||| ||||||||||||||||| Sbjct: 133652 ttaattcaacactacattactgt 133674
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 ttaatacaacactacattactgt 32 ||||| ||||||||||||||||| Sbjct: 20825348 ttaattcaacactacattactgt 20825326
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 ctccctcaaggttcttatg 122 ||||||||||||||||||| Sbjct: 55656 ctccctcaaggttcttatg 55674
>gb|U33158.1|HSGRKG06 Human G protein-coupled receptor kinase GRK4 gene, exon 6 Length = 373 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 tttatttcttaatacaaca 20 ||||||||||||||||||| Sbjct: 72 tttatttcttaatacaaca 90
>gb|AC147639.3| Mus musculus BAC clone RP23-115M6 from 13, complete sequence Length = 187485 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 ttaatacaacactacattactgt 32 ||||||||| ||||||||||||| Sbjct: 58620 ttaatacaatactacattactgt 58642
>emb|Z68273.1|HSL165D7 Human DNA sequence from clone LA04NC01-165D7 on chromosome 4, complete sequence Length = 29103 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 tttatttcttaatacaaca 20 ||||||||||||||||||| Sbjct: 3433 tttatttcttaatacaaca 3415 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,046,649 Number of Sequences: 3902068 Number of extensions: 1046649 Number of successful extensions: 68536 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68457 Number of HSP's gapped (non-prelim): 77 length of query: 134 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 113 effective length of database: 17,151,101,840 effective search space: 1938074507920 effective search space used: 1938074507920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)