ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9h24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009401.1| Triticum aestivum clone wlm96.pk045.d23:fis, full... 218 3e-54
2dbj|AB223039.1| Triticum aestivum TaMDC1 mRNA for multidomain cy... 218 3e-54
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 5e-13
4dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic D... 82 5e-13
5dbj|AK119511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 5e-13
6dbj|AK104155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 5e-13
7dbj|AK073275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 5e-13
8ref|NM_188046.1| Oryza sativa (japonica cultivar-group), Ozsa846... 80 2e-12
9gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 1.6
10gb|AC149789.1| Pan troglodytes BAC clone CH251-56H2 from Y, comp... 38 6.3
11gb|AC126678.3| Mus musculus BAC clone RP24-231D7 from chromosome... 38 6.3
12gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, co... 38 6.3
13emb|AL390065.20| Human DNA sequence from clone RP11-520M5 on chr... 38 6.3
14dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, c... 38 6.3
15gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 38 6.3
16gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 38 6.3
17gb|U33158.1|HSGRKG06 Human G protein-coupled receptor kinase GRK... 38 6.3
18gb|AC147639.3| Mus musculus BAC clone RP23-115M6 from 13, comple... 38 6.3
19emb|Z68273.1|HSL165D7 Human DNA sequence from clone LA04NC01-165... 38 6.3

>gb|BT009401.1| Triticum aestivum clone wlm96.pk045.d23:fis, full insert mRNA
           sequence
          Length = 1149

 Score =  218 bits (110), Expect = 3e-54
 Identities = 129/134 (96%), Gaps = 1/134 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttatttcttaatacaacactacattactgtgagcttaacaagtcagattcactggctg 60
           |||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 920 gtttatttcttagtacaa-actacattactgtgagctcaacaagtcagattcactggctg 862

                                                                       
Query: 61  ctagattcgtcatgctccggctgcatctggttcagcacaaaagctccctcaaggttctta 120
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 861 ctagattcgtcatgctctggctgcatctggttcagcacaaaagctccctcgaggttctta 802

                         
Query: 121 tgcacctcggcttt 134
           ||||||||||||||
Sbjct: 801 tgcacctcggcttt 788



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>dbj|AB223039.1| Triticum aestivum TaMDC1 mRNA for multidomain cystatin, complete
           cds
          Length = 1031

 Score =  218 bits (110), Expect = 3e-54
 Identities = 129/134 (96%), Gaps = 1/134 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttatttcttaatacaacactacattactgtgagcttaacaagtcagattcactggctg 60
           |||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 835 gtttatttcttagtacaa-actacattactgtgagctcaacaagtcagattcactggctg 777

                                                                       
Query: 61  ctagattcgtcatgctccggctgcatctggttcagcacaaaagctccctcaaggttctta 120
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 776 ctagattcgtcatgctctggctgcatctggttcagcacaaaagctccctcgaggttctta 717

                         
Query: 121 tgcacctcggcttt 134
           ||||||||||||||
Sbjct: 716 tgcacctcggcttt 703



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                           
Query: 50      ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 109
               ||||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || |
Sbjct: 9324918 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 9324977

                                        
Query: 110     caaggttcttatgcacctcggcttt 134
               |||||||||| || |||||||||||
Sbjct: 9324978 caaggttcttgtggacctcggcttt 9325002



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>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0667A10
          Length = 152237

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                          
Query: 50     ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 109
              ||||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || |
Sbjct: 101512 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 101571

                                       
Query: 110    caaggttcttatgcacctcggcttt 134
              |||||||||| || |||||||||||
Sbjct: 101572 caaggttcttgtggacctcggcttt 101596



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>dbj|AK119511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C04, full
           insert sequence
          Length = 1095

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                       
Query: 50  ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 109
           ||||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || |
Sbjct: 852 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 793

                                    
Query: 110 caaggttcttatgcacctcggcttt 134
           |||||||||| || |||||||||||
Sbjct: 792 caaggttcttgtggacctcggcttt 768



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>dbj|AK104155.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B08, full
           insert sequence
          Length = 1023

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                       
Query: 50  ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 109
           ||||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || |
Sbjct: 750 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 691

                                    
Query: 110 caaggttcttatgcacctcggcttt 134
           |||||||||| || |||||||||||
Sbjct: 690 caaggttcttgtggacctcggcttt 666



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>dbj|AK073275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025K21, full
           insert sequence
          Length = 1095

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                       
Query: 50  ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 109
           ||||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || |
Sbjct: 847 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 788

                                    
Query: 110 caaggttcttatgcacctcggcttt 134
           |||||||||| || |||||||||||
Sbjct: 787 caaggttcttgtggacctcggcttt 763



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>ref|NM_188046.1| Oryza sativa (japonica cultivar-group), Ozsa8466 predicted mRNA
          Length = 753

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                       
Query: 51  tcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccctc 110
           |||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || ||
Sbjct: 753 tcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgccccttc 694

                                   
Query: 111 aaggttcttatgcacctcggcttt 134
           ||||||||| || |||||||||||
Sbjct: 693 aaggttcttgtggacctcggcttt 670



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 66      ttcgtcatgctccggctgca 85
               ||||||||||||||||||||
Sbjct: 3163640 ttcgtcatgctccggctgca 3163621



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>gb|AC149789.1| Pan troglodytes BAC clone CH251-56H2 from Y, complete sequence
          Length = 172440

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 10    ttaatacaacactacattactgt 32
             ||||| |||||||||||||||||
Sbjct: 13795 ttaattcaacactacattactgt 13817



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>gb|AC126678.3| Mus musculus BAC clone RP24-231D7 from chromosome 13, complete sequence
          Length = 150512

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 10     ttaatacaacactacattactgt 32
              ||||||||| |||||||||||||
Sbjct: 108570 ttaatacaatactacattactgt 108548



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>gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, complete sequence
          Length = 176345

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 10     ttaatacaacactacattactgt 32
              ||||| |||||||||||||||||
Sbjct: 114234 ttaattcaacactacattactgt 114256



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>emb|AL390065.20| Human DNA sequence from clone RP11-520M5 on chromosome 4, complete
             sequence
          Length = 157119

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     tttatttcttaatacaaca 20
             |||||||||||||||||||
Sbjct: 65557 tttatttcttaatacaaca 65539



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>dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, complete sequence
          Length = 219969

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 10     ttaatacaacactacattactgt 32
              ||||| |||||||||||||||||
Sbjct: 133652 ttaattcaacactacattactgt 133674



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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 10       ttaatacaacactacattactgt 32
                ||||| |||||||||||||||||
Sbjct: 20825348 ttaattcaacactacattactgt 20825326



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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
             hypothetical protein, putative NAM protein, putative
             cis-zeatin O-glucosyltransferases, putative small nuclear
             ribonucleoprotein, putative cis-zeatin
             O-glucosyltransferase, putative glutathione peroxidase,
             putative copper-exporting ATPases, putative
             serine/threonine dehydratase, and putative actin
             depolymerizing factor genes, complete cds; and
             hypothetical protein gene, partial cds
          Length = 157237

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 104   ctccctcaaggttcttatg 122
             |||||||||||||||||||
Sbjct: 55656 ctccctcaaggttcttatg 55674



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>gb|U33158.1|HSGRKG06 Human G protein-coupled receptor kinase GRK4 gene, exon 6
          Length = 373

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 2  tttatttcttaatacaaca 20
          |||||||||||||||||||
Sbjct: 72 tttatttcttaatacaaca 90



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>gb|AC147639.3| Mus musculus BAC clone RP23-115M6 from 13, complete sequence
          Length = 187485

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 10    ttaatacaacactacattactgt 32
             ||||||||| |||||||||||||
Sbjct: 58620 ttaatacaatactacattactgt 58642



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>emb|Z68273.1|HSL165D7 Human DNA sequence from clone LA04NC01-165D7 on chromosome 4,
            complete sequence
          Length = 29103

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 2    tttatttcttaatacaaca 20
            |||||||||||||||||||
Sbjct: 3433 tttatttcttaatacaaca 3415


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,046,649
Number of Sequences: 3902068
Number of extensions: 1046649
Number of successful extensions: 68536
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68457
Number of HSP's gapped (non-prelim): 77
length of query: 134
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 113
effective length of database: 17,151,101,840
effective search space: 1938074507920
effective search space used: 1938074507920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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