ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags12i15 |
|---|---|
| Clone Library Name | barley_pub |
>IF36_DROME (O77410) Probable eukaryotic translation initiation factor 3| subunit 6 (eIF-3 p48) (eIF3e) Length = 435 Score = 158 bits (399), Expect(2) = 4e-45 Identities = 76/128 (59%), Positives = 99/128 (77%), Gaps = 1/128 (0%) Frame = +3 Query: 198 IDSSSFTSSPVNQLHSRIWLMHWSLFIFFNHENGRNGIIDLF-FQDRYLNAIQTNAPHLL 374 ID+++F S + L R WL+HWS+ +FFNH GR+ II++F ++ YLNAIQT PH++ Sbjct: 194 IDNANF--STIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHIM 251 Query: 375 RYLAAAVVVNKRRRNMLKELIKVIQQEQNIYKDPIIEFLECLYVKYDFDGAQQKLVECEQ 554 RYLA AVV+N+ RRN LK+LIKVIQQE Y+DPI EFLECLYV +DF+GA+ KL EC+ Sbjct: 252 RYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFEGARLKLHECQT 311 Query: 555 VILNDPFL 578 VILND F+ Sbjct: 312 VILNDFFI 319 Score = 43.1 bits (100), Expect(2) = 4e-45 Identities = 19/33 (57%), Positives = 24/33 (72%) Frame = +2 Query: 92 NSERSLSALWGKLAAEILMQNWDVAQEELNRLK 190 N + L+ LWGKLAAEIL NW+ A E+L RL+ Sbjct: 159 NDKNYLNVLWGKLAAEILTLNWNTALEDLTRLR 191
>IF36_MOUSE (P60229) Eukaryotic translation initiation factor 3 subunit 6| (eIF-3 p48) (eIF3e) (Mammary tumor-associated protein INT-6) (Viral integration site protein INT-6) (MMTV integration site 6) Length = 445 Score = 174 bits (441), Expect = 2e-43 Identities = 96/197 (48%), Positives = 120/197 (60%), Gaps = 4/197 (2%) Frame = +3 Query: 18 QFQYECGXVLRSRXISCPSTVLSAPTARGASAPSGASLRRRY*CXXXXXXXXXXXXXXXX 197 +FQYECG + VL T R A + L Sbjct: 136 KFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKET 195 Query: 198 IDSSSFTSSPVNQLHSRIWLMHWSLFIFFNHENGRNGIIDLF-FQDRYLNAIQTNAPHLL 374 ID++S SSP+ L R WL+HWSLF+FFNH GR+ IIDLF +Q +YLNAIQT PH+L Sbjct: 196 IDNNS-VSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHIL 254 Query: 375 RYLAAAVVVNK---RRRNMLKELIKVIQQEQNIYKDPIIEFLECLYVKYDFDGAQQKLVE 545 RYL AV+ NK +RR +LK+L+KVIQQE YKDPI EF+ECLYV +DFDGAQ+KL E Sbjct: 255 RYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRE 314 Query: 546 CEQVILNDPFLGKRVEE 596 CE V++ND FL +E+ Sbjct: 315 CESVLVNDFFLVACLED 331
>IF36_HUMAN (P60228) Eukaryotic translation initiation factor 3 subunit 6| (eIF-3 p48) (eIF3e) (Viral integration site protein INT-6 homolog) Length = 445 Score = 174 bits (441), Expect = 2e-43 Identities = 96/197 (48%), Positives = 120/197 (60%), Gaps = 4/197 (2%) Frame = +3 Query: 18 QFQYECGXVLRSRXISCPSTVLSAPTARGASAPSGASLRRRY*CXXXXXXXXXXXXXXXX 197 +FQYECG + VL T R A + L Sbjct: 136 KFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKET 195 Query: 198 IDSSSFTSSPVNQLHSRIWLMHWSLFIFFNHENGRNGIIDLF-FQDRYLNAIQTNAPHLL 374 ID++S SSP+ L R WL+HWSLF+FFNH GR+ IIDLF +Q +YLNAIQT PH+L Sbjct: 196 IDNNS-VSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHIL 254 Query: 375 RYLAAAVVVNK---RRRNMLKELIKVIQQEQNIYKDPIIEFLECLYVKYDFDGAQQKLVE 545 RYL AV+ NK +RR +LK+L+KVIQQE YKDPI EF+ECLYV +DFDGAQ+KL E Sbjct: 255 RYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRE 314 Query: 546 CEQVILNDPFLGKRVEE 596 CE V++ND FL +E+ Sbjct: 315 CESVLVNDFFLVACLED 331
>IF36_CAEEL (O61820) Probable eukaryotic translation initiation factor 3| subunit 6 (eIF-3 p48) (eIF3e) Length = 432 Score = 141 bits (355), Expect(2) = 2e-38 Identities = 67/113 (59%), Positives = 89/113 (78%), Gaps = 2/113 (1%) Frame = +3 Query: 246 RIWLMHWSLFIFFNHENGRNGIIDLFF-QDRYLNAIQTNAPHLLRYLAAAVVVNK-RRRN 419 R WLMHW+LF+++N+ GR+ II++F Q YLNAIQ APHLLRYLA AVV +K R++N Sbjct: 211 RAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLAPHLLRYLAVAVVTSKSRQKN 270 Query: 420 MLKELIKVIQQEQNIYKDPIIEFLECLYVKYDFDGAQQKLVECEQVILNDPFL 578 LK+L+KVI E++ YKDP+ +FL CLY+KYDFD AQ+ L +CE+V+ ND FL Sbjct: 271 SLKDLVKVIDIERHSYKDPVTDFLTCLYIKYDFDEAQEMLQKCEEVLSNDFFL 323 Score = 38.1 bits (87), Expect(2) = 2e-38 Identities = 19/43 (44%), Positives = 32/43 (74%), Gaps = 1/43 (2%) Frame = +2 Query: 65 LSQYRALCTNSERS-LSALWGKLAAEILMQNWDVAQEELNRLK 190 L YR L ++ + L+AL+GKLA+EIL+Q W+ A+++L +L+ Sbjct: 151 LYYYRNLVNQADPNYLNALYGKLASEILLQEWEHARDDLLKLR 193
>IF36_SCHPO (O94513) Eukaryotic translation initiation factor 3 subunit 6| (eIF-3 p48) Length = 501 Score = 124 bits (310), Expect(2) = 7e-35 Identities = 64/139 (46%), Positives = 83/139 (59%), Gaps = 12/139 (8%) Frame = +3 Query: 198 IDSSSFTSSPVNQLHSRIWLMHWSLFIFFNHENGRNGIIDLFFQDRYLNAIQTNAPHLLR 377 +DS SF S V QL +R WL+HWSLF FNH NG + + DLFF YLN IQT+ P LLR Sbjct: 208 VDSKSFKDSAV-QLRNRTWLLHWSLFPLFNHANGCDTLCDLFFYTPYLNTIQTSCPWLLR 266 Query: 378 YLAAAVVVNKRRRNM------------LKELIKVIQQEQNIYKDPIIEFLECLYVKYDFD 521 YL AVV N+ N +++L+++I QE Y DP+ F+ LY + DF+ Sbjct: 267 YLTVAVVTNQNNANQKPRNPRQSYQRRMRDLVRIISQENYEYSDPVTSFISALYTEVDFE 326 Query: 522 GAQQKLVECEQVILNDPFL 578 AQ L ECE+V+ D FL Sbjct: 327 KAQHCLRECEEVLKTDFFL 345 Score = 43.1 bits (100), Expect(2) = 7e-35 Identities = 20/42 (47%), Positives = 27/42 (64%) Frame = +2 Query: 65 LSQYRALCTNSERSLSALWGKLAAEILMQNWDVAQEELNRLK 190 L +RA + E + SA WGK A+EIL +WD A EEL +L+ Sbjct: 164 LYHFRAFSKDPELNASATWGKFASEILTVDWDGAMEELGKLR 205
>YMP0_YEAST (Q03687) Hypothetical 46.9 kDa protein in PLB1-HXT2 intergenic| region Length = 405 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -2 Query: 316 SMIPFLPFSWLKKMKRLQCISHILLWSWLTGDEVKLLESIIXLEPVELL 170 S++P + L K+K +Q ILL SWL GD +K+ I + + L Sbjct: 265 SLLPLPQIAILYKLKSVQGFKLILLVSWLCGDTLKITYLIFGAKNISAL 313
>DHSD_THEAC (Q08717) Succinate dehydrogenase hydrophobic membrane anchor| protein Length = 123 Score = 31.6 bits (70), Expect = 1.9 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 210 SFTSSPVNQLHSRIWLMHWSLFIFFNHENGRNGI 311 +F SS +NQLH+ WL + +F++ +G NG+ Sbjct: 44 AFFSSVINQLHNPWWLAFFLIFVYIITYHGINGL 77
>DIF1_CAEEL (Q27257) Protein dif-1| Length = 312 Score = 29.6 bits (65), Expect = 7.2 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 6/35 (17%) Frame = -2 Query: 172 LLRDIPV------LHQYLRRKLAPEGAEAPLAVGA 86 LLRDIP +++YL++K + EGA+ L+ GA Sbjct: 173 LLRDIPASAAYLSVYEYLKKKFSGEGAQRTLSPGA 207 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,828,388 Number of Sequences: 219361 Number of extensions: 1198298 Number of successful extensions: 3713 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3625 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3703 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
