ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9h22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTSK_RHILO (Q98EH3) DNA translocase ftsK 29 6.3
2GLMM_ANASP (Q8YVS4) Phosphoglucosamine mutase (EC 5.4.2.10) 29 8.2
3CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 ... 29 8.2

>FTSK_RHILO (Q98EH3) DNA translocase ftsK|
          Length = 887

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 445 DVLFSDDQMQDWSDDA*AQRTDAPHTRV-DIRHDTATR 335
           D+   DD+  D+ D+  AQR  AP  +V   R D ATR
Sbjct: 313 DIFDRDDEDMDFDDEPVAQRRAAPAAKVQQFRSDAATR 350



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>GLMM_ANASP (Q8YVS4) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 490

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 254 APSLLRLQVVPCFFRDGCHGSGAELCSSGVSLPL 153
           APSL+ L   P F  DG  G   EL S+ ++L +
Sbjct: 31  APSLISLPATPLFGTDGIRGKVGELLSAPLALQI 64



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>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced
            gene B protein)
          Length = 2715

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +1

Query: 115  HMQITTLQSQKTLKGKETPDEQSSAPEPWHPSLKKQGTTCSRSSDGAWKC 264
            H +I  L+SQK  K K   D  +S PEP          +C R   G   C
Sbjct: 2644 HSEIVGLESQKRKKKKTKGDNPNSHPEP--------APSCEREPSGDENC 2685


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,043,068
Number of Sequences: 219361
Number of extensions: 873849
Number of successful extensions: 2676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2676
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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