ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12i02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK072593.1| Oryza sativa (japonica cultivar-group) cDNA clon... 391 e-105
2dbj|AK073124.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
4dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
7dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
8dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
9ref|XM_474282.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
10dbj|AK071148.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
11gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 44 0.46
12gb|AY425372.1| Haemadipsa sumatrana 28S ribosomal RNA gene, part... 44 0.46
13gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 44 0.46
14dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.46
15gb|CP000036.1| Shigella boydii Sb227, complete genome 44 0.46
16emb|BX571983.11| Zebrafish DNA sequence from clone DKEY-18M7 in ... 42 1.8
17dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.8
18emb|CR550307.8| Zebrafish DNA sequence from clone DKEY-174E10 in... 42 1.8
19gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 7.2
20gb|AY605474.1| Diplometopon zarudnyi voucher MVZ 234273 mitochon... 40 7.2
21gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 7.2
22gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 7.2
23gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.2
24emb|X79095.1|FTPDKG F.trinervia pdk gene for pyruvate,orthophosp... 40 7.2
25emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 7.2
26emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 40 7.2
27emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 7.2
28emb|BX537351.16| Zebrafish DNA sequence from clone DKEYP-84B10 i... 40 7.2
29dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 7.2
30dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 7.2
31gb|AC016583.8| Homo sapiens chromosome 5 clone CTD-2591A1, compl... 40 7.2
32ref|XM_394246.2| PREDICTED: Apis mellifera similar to CG12296-PA... 40 7.2
33dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.2
34dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 7.2
35dbj|AP005771.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
36emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.2
37gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 7.2 
>dbj|AK072593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133F22, full
           insert sequence
          Length = 1996

 Score =  391 bits (197), Expect = e-105
 Identities = 436/513 (84%), Gaps = 2/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 21  gggcagcacccggcgagcagctgctccaaggnagcaccagaagatctaccgcgactggtt 80
           |||||||| ||||||||| ||| |||||||| |||||||||||| |||||  || |||||
Sbjct: 108 gggcagcatccggcgagcggctactccaagg-agcaccagaagacctaccaggagtggtt 166

                                                                       
Query: 81  cgccctcgccgactcagatggcgacggccgcatcaccggccccgacgccatcaggttctt 140
           |||| |||||||||||||||||||||| |||||||| || ||||||||||||| ||||||
Sbjct: 167 cgccttcgccgactcagatggcgacgggcgcatcacggggcccgacgccatcaagttctt 226

                                                                       
Query: 141 cgccatgtccagcctcccccgcgccgacctcaagcaggtctgggccatcgccgactccaa 200
           |||||||||||  |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 227 cgccatgtccaagctcccccgcgccgacctcaagcaggtttgggcaatcgcggactccaa 286

                                                                       
Query: 201 gcggctggggtacctcggcttcagcgaattcatcacggcgatgcagctcgtctctctggc 260
           ||||| ||||||| | || |||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 287 gcggcaggggtacttaggtttcagcgaattcgtcacggcaatgcagcttgtctctctggc 346

                                                                       
Query: 261 gcaatcggggaatgagatatcccaagacagccttcagcgtgaagatctaatcagcttcaa 320
           |||| ||||| |||||||  | |||||||||||| |||| || ||  |   |||| | ||
Sbjct: 347 gcaagcgggggatgagatcactcaagacagccttaagcgcgatgacttgggcagcctgaa 406

                                                                       
Query: 321 tcccccagtgatggagggtttggatgctctgcttgcgaaatccaagcatctggcaaagag 380
           ||| |||  |||||| |||||||||||||| |||| |||||| |||||||  || |||||
Sbjct: 407 tcctccaacgatggatggtttggatgctctacttgtgaaatcaaagcatcatgctaagag 466

                                                                       
Query: 381 ggtcgatcatgatatggatggatttcctcaagcacaaggaccttctactaaccattggtt 440
            || ||||  ||||| |||||||||||||| || |||   ||| | || | ||| |||||
Sbjct: 467 agttgatccagatatcgatggatttcctcaggctcaatctcctgcaacgagccaatggtt 526

                                                                       
Query: 441 taactctaaatcatccaagaagatacccctgactggctgttacttctgtcattgatggtt 500
            | ||| || || || |||||||||||||||| | ||||||||||||||||||||||| |
Sbjct: 527 cagctcaaagtcctcaaagaagatacccctgaat-gctgttacttctgtcattgatgggt 585

                                            
Query: 501 taaaaagactatacattgaaaaattgaagcctt 533
           |||||| ||||||||| |||||||| |||||||
Sbjct: 586 taaaaaaactatacatcgaaaaattaaagcctt 618
to top
>dbj|AK073124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033008E09, full
           insert sequence
          Length = 1873

 Score =  155 bits (78), Expect = 2e-34
 Identities = 193/230 (83%), Gaps = 1/230 (0%)
 Strand = Plus / Plus

                                                                       
Query: 41  ctgctccaaggnagcaccagaagatctaccgcgactggttcgccctcgccgactcagatg 100
           ||||||||||| ||||||| |||||||||  || |||||||||| ||||| || ||||||
Sbjct: 113 ctgctccaagg-agcaccacaagatctacgccggctggttcgccgtcgccaacccagatg 171

                                                                       
Query: 101 gcgacggccgcatcaccggccccgacgccatcaggttcttcgccatgtccagcctccccc 160
           | || || ||  |||| ||  | || || | || |||||||||||||||| ||||  |||
Sbjct: 172 gagatgggcgtgtcacgggtgctgatgctaccaagttcttcgccatgtccggcctgtccc 231

                                                                       
Query: 161 gcgccgacctcaagcaggtctgggccatcgccgactccaagcggctggggtacctcggct 220
           ||||||||||||||||||||||||| ||||| ||| ||||||||| ||||| ||||||||
Sbjct: 232 gcgccgacctcaagcaggtctgggcgatcgcggacaccaagcggcaggggttcctcggct 291

                                                             
Query: 221 tcagcgaattcatcacggcgatgcagctcgtctctctggcgcaatcgggg 270
           || |||| ||| || | |||||||||||||| || ||||||||| |||||
Sbjct: 292 tcggcgagttcgtcgccgcgatgcagctcgtgtcactggcgcaagcgggg 341



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 61/67 (91%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                       
Query: 466 cccctgactggctgttacttctgtcattgatggtttaaaaagactatacattgaaaaatt 525
           |||||||||| ||||||||||||| |||||||| ||||||||||||||| | |||||| |
Sbjct: 543 cccctgactg-ctgttacttctgtaattgatggcttaaaaagactatacgtagaaaaact 601

                  
Query: 526 gaagcct 532
           |||||||
Sbjct: 602 gaagcct 608
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  121 bits (61), Expect = 2e-24
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                            
Query: 95       cagatggcgacggccgcatcaccggccccgacgccatcaggttcttcgccatgtccagcc 154
                ||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||  |
Sbjct: 28305600 cagatggcgacgggcgcatcacggggcccgacgccatcaagttcttcgccatgtccaagc 28305659

                                         
Query: 155      tcccccgcgccgacctcaagcaggt 179
                |||||||||||||||||||||||||
Sbjct: 28305660 tcccccgcgccgacctcaagcaggt 28305684



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 67/73 (91%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                            
Query: 461      agatacccctgactggctgttacttctgtcattgatggtttaaaaagactatacattgaa 520
                |||||||||||| || |||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct: 28306912 agatacccctgaatg-ctgttacttctgtcattgatgggttaaaaaaactatacatcgaa 28306970

                             
Query: 521      aaattgaagcctt 533
                ||||| |||||||
Sbjct: 28306971 aaattaaagcctt 28306983



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 68/77 (88%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                            
Query: 21       gggcagcacccggcgagcagctgctccaaggnagcaccagaagatctaccgcgactggtt 80
                |||||||| ||||||||| ||| |||||||| |||||||||||| |||||  || |||||
Sbjct: 28305397 gggcagcatccggcgagcggctactccaagg-agcaccagaagacctaccaggagtggtt 28305455

                                 
Query: 81       cgccctcgccgactcag 97
                |||| ||||||||||||
Sbjct: 28305456 cgccttcgccgactcag 28305472



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                            
Query: 176      aggtctgggccatcgccgactccaagcggctggggtacctcggcttcagcgaattcatca 235
                |||| ||||| ||||| ||||||||||||| ||||||| | || |||||||||||| |||
Sbjct: 28305769 aggtttgggcaatcgcggactccaagcggcaggggtacttaggtttcagcgaattcgtca 28305828

                           
Query: 236      cggcgatgcag 246
                |||| ||||||
Sbjct: 28305829 cggcaatgcag 28305839



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 245      agctcgtctctctggcgcaatcggggaatgagatatcccaagacagccttcagcg 299
                |||| ||||||||||||||| ||||| |||||||  | |||||||||||| ||||
Sbjct: 28305934 agcttgtctctctggcgcaagcgggggatgagatcactcaagacagccttaagcg 28305988
to top
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0661G04
          Length = 157292

 Score =  121 bits (61), Expect = 2e-24
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                         
Query: 95    cagatggcgacggccgcatcaccggccccgacgccatcaggttcttcgccatgtccagcc 154
             ||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||  |
Sbjct: 18178 cagatggcgacgggcgcatcacggggcccgacgccatcaagttcttcgccatgtccaagc 18237

                                      
Query: 155   tcccccgcgccgacctcaagcaggt 179
             |||||||||||||||||||||||||
Sbjct: 18238 tcccccgcgccgacctcaagcaggt 18262



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 67/73 (91%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                         
Query: 461   agatacccctgactggctgttacttctgtcattgatggtttaaaaagactatacattgaa 520
             |||||||||||| || |||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct: 19490 agatacccctgaatg-ctgttacttctgtcattgatgggttaaaaaaactatacatcgaa 19548

                          
Query: 521   aaattgaagcctt 533
             ||||| |||||||
Sbjct: 19549 aaattaaagcctt 19561



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 68/77 (88%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                         
Query: 21    gggcagcacccggcgagcagctgctccaaggnagcaccagaagatctaccgcgactggtt 80
             |||||||| ||||||||| ||| |||||||| |||||||||||| |||||  || |||||
Sbjct: 17975 gggcagcatccggcgagcggctactccaagg-agcaccagaagacctaccaggagtggtt 18033

                              
Query: 81    cgccctcgccgactcag 97
             |||| ||||||||||||
Sbjct: 18034 cgccttcgccgactcag 18050



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                         
Query: 176   aggtctgggccatcgccgactccaagcggctggggtacctcggcttcagcgaattcatca 235
             |||| ||||| ||||| ||||||||||||| ||||||| | || |||||||||||| |||
Sbjct: 18347 aggtttgggcaatcgcggactccaagcggcaggggtacttaggtttcagcgaattcgtca 18406

                        
Query: 236   cggcgatgcag 246
             |||| ||||||
Sbjct: 18407 cggcaatgcag 18417



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 245   agctcgtctctctggcgcaatcggggaatgagatatcccaagacagccttcagcg 299
             |||| ||||||||||||||| ||||| |||||||  | |||||||||||| ||||
Sbjct: 18512 agcttgtctctctggcgcaagcgggggatgagatcactcaagacagccttaagcg 18566
to top
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0623A10
          Length = 156517

 Score =  121 bits (61), Expect = 2e-24
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                          
Query: 95     cagatggcgacggccgcatcaccggccccgacgccatcaggttcttcgccatgtccagcc 154
              ||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||  |
Sbjct: 103629 cagatggcgacgggcgcatcacggggcccgacgccatcaagttcttcgccatgtccaagc 103688

                                       
Query: 155    tcccccgcgccgacctcaagcaggt 179
              |||||||||||||||||||||||||
Sbjct: 103689 tcccccgcgccgacctcaagcaggt 103713



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 67/73 (91%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                          
Query: 461    agatacccctgactggctgttacttctgtcattgatggtttaaaaagactatacattgaa 520
              |||||||||||| || |||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct: 104941 agatacccctgaatg-ctgttacttctgtcattgatgggttaaaaaaactatacatcgaa 104999

                           
Query: 521    aaattgaagcctt 533
              ||||| |||||||
Sbjct: 105000 aaattaaagcctt 105012



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 68/77 (88%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                          
Query: 21     gggcagcacccggcgagcagctgctccaaggnagcaccagaagatctaccgcgactggtt 80
              |||||||| ||||||||| ||| |||||||| |||||||||||| |||||  || |||||
Sbjct: 103426 gggcagcatccggcgagcggctactccaagg-agcaccagaagacctaccaggagtggtt 103484

                               
Query: 81     cgccctcgccgactcag 97
              |||| ||||||||||||
Sbjct: 103485 cgccttcgccgactcag 103501



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                          
Query: 176    aggtctgggccatcgccgactccaagcggctggggtacctcggcttcagcgaattcatca 235
              |||| ||||| ||||| ||||||||||||| ||||||| | || |||||||||||| |||
Sbjct: 103798 aggtttgggcaatcgcggactccaagcggcaggggtacttaggtttcagcgaattcgtca 103857

                         
Query: 236    cggcgatgcag 246
              |||| ||||||
Sbjct: 103858 cggcaatgcag 103868



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 245    agctcgtctctctggcgcaatcggggaatgagatatcccaagacagccttcagcg 299
              |||| ||||||||||||||| ||||| |||||||  | |||||||||||| ||||
Sbjct: 103963 agcttgtctctctggcgcaagcgggggatgagatcactcaagacagccttaagcg 104017
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 61/67 (91%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                           
Query: 466     cccctgactggctgttacttctgtcattgatggtttaaaaagactatacattgaaaaatt 525
               |||||||||| ||||||||||||| |||||||| ||||||||||||||| | |||||| |
Sbjct: 3169539 cccctgactg-ctgttacttctgtaattgatggcttaaaaagactatacgtagaaaaact 3169481

                      
Query: 526     gaagcct 532
               |||||||
Sbjct: 3169480 gaagcct 3169474



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                            
Query: 135     gttcttcgccatgtccagcctcccccgcgccgacctcaagcaggt 179
               |||||||||||||||| ||||  ||||||||||||||||||||||
Sbjct: 3170502 gttcttcgccatgtccggcctgtcccgcgccgacctcaagcaggt 3170458



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 243      gcagctcgtctctctggcgcaatcggggaatgagat 278
                ||||||||| || ||||||||| | |||||||||||
Sbjct: 20442857 gcagctcgtgtccctggcgcaagcagggaatgagat 20442822
to top
>dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419H03
          Length = 129020

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 61/67 (91%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                         
Query: 466   cccctgactggctgttacttctgtcattgatggtttaaaaagactatacattgaaaaatt 525
             |||||||||| ||||||||||||| |||||||| ||||||||||||||| | |||||| |
Sbjct: 97693 cccctgactg-ctgttacttctgtaattgatggcttaaaaagactatacgtagaaaaact 97635

                    
Query: 526   gaagcct 532
             |||||||
Sbjct: 97634 gaagcct 97628



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                          
Query: 135   gttcttcgccatgtccagcctcccccgcgccgacctcaagcaggt 179
             |||||||||||||||| ||||  ||||||||||||||||||||||
Sbjct: 98656 gttcttcgccatgtccggcctgtcccgcgccgacctcaagcaggt 98612
to top
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1103G11
          Length = 182931

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 61/67 (91%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                         
Query: 466   cccctgactggctgttacttctgtcattgatggtttaaaaagactatacattgaaaaatt 525
             |||||||||| ||||||||||||| |||||||| ||||||||||||||| | |||||| |
Sbjct: 41726 cccctgactg-ctgttacttctgtaattgatggcttaaaaagactatacgtagaaaaact 41668

                    
Query: 526   gaagcct 532
             |||||||
Sbjct: 41667 gaagcct 41661



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                          
Query: 135   gttcttcgccatgtccagcctcccccgcgccgacctcaagcaggt 179
             |||||||||||||||| ||||  ||||||||||||||||||||||
Sbjct: 42689 gttcttcgccatgtccggcctgtcccgcgccgacctcaagcaggt 42645
to top
>ref|XM_474282.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1629

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                       
Query: 135 gttcttcgccatgtccagcctcccccgcgccgacctcaagcaggtctgggccatcgccga 194
           ||||||||||||||| |  ||| ||||| |||| || |||||||||||||| ||||| ||
Sbjct: 123 gttcttcgccatgtcgaatctctcccgccccgagctgaagcaggtctgggcaatcgctga 182

                    
Query: 195 ctccaagcg 203
            ||||||||
Sbjct: 183 ttccaagcg 191
to top
>dbj|AK071148.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081M19, full
           insert sequence
          Length = 2000

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                       
Query: 135 gttcttcgccatgtccagcctcccccgcgccgacctcaagcaggtctgggccatcgccga 194
           ||||||||||||||| |  ||| ||||| |||| || |||||||||||||| ||||| ||
Sbjct: 237 gttcttcgccatgtcgaatctctcccgccccgagctgaagcaggtctgggcaatcgctga 296

                    
Query: 195 ctccaagcg 203
            ||||||||
Sbjct: 297 ttccaagcg 305
to top
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 366     gcatctggcaaagagggtcgat 387
               ||||||||||||||||||||||
Sbjct: 2926979 gcatctggcaaagagggtcgat 2926958
to top
>gb|AY425372.1| Haemadipsa sumatrana 28S ribosomal RNA gene, partial sequence
          Length = 260

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 96  agatggcgacggccgcatcaccggcc 121
           |||||||||||| |||||||||||||
Sbjct: 105 agatggcgacgggcgcatcaccggcc 130
to top
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 366     gcatctggcaaagagggtcgat 387
               ||||||||||||||||||||||
Sbjct: 2921660 gcatctggcaaagagggtcgat 2921639
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 97      gatggcgacggccgcatcaccg 118
               ||||||||||||||||||||||
Sbjct: 8920567 gatggcgacggccgcatcaccg 8920546
to top
>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 366     gcatctggcaaagagggtcgat 387
               ||||||||||||||||||||||
Sbjct: 2731866 gcatctggcaaagagggtcgat 2731845
to top
>emb|BX571983.11| Zebrafish DNA sequence from clone DKEY-18M7 in linkage group 11, complete
              sequence
          Length = 248929

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 330    gatggagggtttggatgctct 350
              |||||||||||||||||||||
Sbjct: 156117 gatggagggtttggatgctct 156097
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 101     gcgacggccgcatcaccggcc 121
               |||||||||||||||||||||
Sbjct: 5777776 gcgacggccgcatcaccggcc 5777756
to top
>emb|CR550307.8| Zebrafish DNA sequence from clone DKEY-174E10 in linkage group 11,
             complete sequence
          Length = 178645

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 330   gatggagggtttggatgctct 350
             |||||||||||||||||||||
Sbjct: 79145 gatggagggtttggatgctct 79165
to top
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     tccaagcggctggggtacct 215
               ||||||||||||||||||||
Sbjct: 1730388 tccaagcggctggggtacct 1730369
to top
>gb|AY605474.1| Diplometopon zarudnyi voucher MVZ 234273 mitochondrion, complete genome
          Length = 16730

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   gtgatggagggtttggatgc 347
             ||||||||||||||||||||
Sbjct: 16144 gtgatggagggtttggatgc 16125
to top
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     tccaagcggctggggtacct 215
               ||||||||||||||||||||
Sbjct: 1731234 tccaagcggctggggtacct 1731215
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 130     atcaggttcttcgccatgtc 149
               ||||||||||||||||||||
Sbjct: 3433834 atcaggttcttcgccatgtc 3433853
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 111     catcaccggccccgacgccatcag 134
               ||||||||| ||||||||||||||
Sbjct: 2120040 catcaccggacccgacgccatcag 2120017
to top
>emb|X79095.1|FTPDKG F.trinervia pdk gene for pyruvate,orthophosphate dikinase
          Length = 14645

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   tttaactctaaatcatccaa 458
             ||||||||||||||||||||
Sbjct: 13283 tttaactctaaatcatccaa 13264
to top
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    tcgatcatgatatggatgga 402
              ||||||||||||||||||||
Sbjct: 897661 tcgatcatgatatggatgga 897642
to top
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
          Length = 346879

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 111    catcaccggccccgacgccatcag 134
              ||||||||| ||||||||||||||
Sbjct: 259657 catcaccgggcccgacgccatcag 259634
to top
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tctgggccatcgccgactcc 198
             ||||||||||||||||||||
Sbjct: 45113 tctgggccatcgccgactcc 45094
to top
>emb|BX537351.16| Zebrafish DNA sequence from clone DKEYP-84B10 in linkage group 17,
             complete sequence
          Length = 161005

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 475   ggctgttacttctgtcattg 494
             ||||||||||||||||||||
Sbjct: 97205 ggctgttacttctgtcattg 97186
to top
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    atcaggttcttcgccatgtc 149
              ||||||||||||||||||||
Sbjct: 666497 atcaggttcttcgccatgtc 666478
to top
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 282     ccaagacagccttcagcgtg 301
               ||||||||||||||||||||
Sbjct: 1417515 ccaagacagccttcagcgtg 1417496
to top
>gb|AC016583.8| Homo sapiens chromosome 5 clone CTD-2591A1, complete sequence
          Length = 184769

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    agcacccggcgagcagctgc 44
             ||||||||||||||||||||
Sbjct: 66534 agcacccggcgagcagctgc 66515
to top
>ref|XM_394246.2| PREDICTED: Apis mellifera similar to CG12296-PA (LOC410770), mRNA
          Length = 1644

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 ccgacgccatcaggttcttc 141
           ||||||||||||||||||||
Sbjct: 949 ccgacgccatcaggttcttc 930
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     aggtctgggccatcgccgac 195
               ||||||||||||||||||||
Sbjct: 7796132 aggtctgggccatcgccgac 7796151
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    caggtctgggccatcgccga 194
              ||||||||||||||||||||
Sbjct: 834516 caggtctgggccatcgccga 834497
to top
>dbj|AP005771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0069D13
          Length = 157088

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 243   gcagctcgtctctctggcgcaatcggggaatgagat 278
             ||||||||| || ||||||||| | |||||||||||
Sbjct: 85281 gcagctcgtgtccctggcgcaagcagggaatgagat 85246
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 105     cggccgcatcaccggccccgacgccatc 132
               |||||||| |||| ||||||||||||||
Sbjct: 5511211 cggccgcaacaccagccccgacgccatc 5511238
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    caggtctgggccatcgccga 194
              ||||||||||||||||||||
Sbjct: 503904 caggtctgggccatcgccga 503885


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,969,132
Number of Sequences: 3902068
Number of extensions: 3969132
Number of successful extensions: 73937
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73294
Number of HSP's gapped (non-prelim): 642
length of query: 533
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 510
effective length of database: 17,143,297,704
effective search space: 8743081829040
effective search space used: 8743081829040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top