>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene|
           homolog)
          Length = 1111

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 289 HPPTTL--PRPQIVAEGQASRTFFDNVKSDVNTSTQGNGFKPSSLRRPTPKIGYFDAEKS 462
           H PT++  P+P  + E  A  T     + +V TS  GNG  P      T  +GY   E +
Sbjct: 680 HHPTSVYSPQPPSITENVAMDTRGLQEEPEVGTSVMGNGLNPYMDFSSTDTLGYGGPEGT 739

Query: 463 VEQKAGAR 486
             +   AR
Sbjct: 740 AAEPYEAR 747

>K0310_HUMAN (O15027) Protein KIAA0310|
          Length = 2179

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 22/84 (26%), Positives = 33/84 (39%)
 Frame = +1

Query: 289 HPPTTLPRPQIVAEGQASRTFFDNVKSDVNTSTQGNGFKPSSLRRPTPKIGYFDAEKSVE 468
           H P   P   + ++G+      D V    + S   N   P S  R  P+I    A   + 
Sbjct: 87  HSPLVAPPAALPSDGR------DEVSHLQSGSHLANNSDPESTFRQNPRIVNHWASPELR 140

Query: 469 QKAGARAQLQPTKVLFSPLATQSS 540
           Q  G + + +P   L +PLA   S
Sbjct: 141 QNPGVKNEHRPASALVNPLARGDS 164

>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)|
           (Oncogene GLI)
          Length = 1106

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
 Frame = +1

Query: 295 PTTL--PRPQIVAEGQASRTFFDNVKSDVNTSTQGNGFKPSSLRRPTPKIGYFDAEKSVE 468
           PT++  P+P  + E  A        + +V TS  G+G  P     PT  +GY   E +  
Sbjct: 681 PTSVYSPQPPSITENAAMDARGLQEEPEVGTSMVGSGLNPYMDFPPTDTLGYGGPEGAAA 740

Query: 469 QKAGARAQLQ-------PTKVLFSPLATQSSWIPSTPKT 564
           +  GAR           PT    +P   Q+S+   T +T
Sbjct: 741 EPYGARGPGSLPLGPGPPTNYGPNPCPQQASYPDPTQET 779

>UCHL3_RAT (Q91Y78) Ubiquitin carboxyl-terminal hydrolase isozyme L3 (EC|
           3.4.19.12) (UCH-L3) (Ubiquitin thioesterase L3)
          Length = 230

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 422 LRKLDGLKPFPWVDVLTSDFTLSKNVLEAC 333
           L +LDG KPFP     TSD TL ++ +E C
Sbjct: 180 LYELDGRKPFPINHGKTSDETLLEDAIEVC 209

>UCHL3_MOUSE (Q9JKB1) Ubiquitin carboxyl-terminal hydrolase isozyme L3 (EC|
           3.4.19.12) (UCH-L3) (Ubiquitin thioesterase L3)
          Length = 230

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 422 LRKLDGLKPFPWVDVLTSDFTLSKNVLEAC 333
           L +LDG KPFP     TSD TL ++ +E C
Sbjct: 180 LYELDGRKPFPINHGKTSDETLLEDAIEVC 209

>UCHL4_MOUSE (P58321) Ubiquitin carboxyl-terminal hydrolase isozyme L4 (EC|
           3.4.19.12) (UCH-L4) (Ubiquitin thioesterase L4)
          Length = 233

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 422 LRKLDGLKPFPWVDVLTSDFTLSKNVLEAC 333
           L +LDG KPFP     TSD TL ++V++ C
Sbjct: 183 LYELDGWKPFPINHGKTSDETLLEDVIKVC 212

>UCHL3_HUMAN (P15374) Ubiquitin carboxyl-terminal hydrolase isozyme L3 (EC|
           3.4.19.12) (UCH-L3) (Ubiquitin thioesterase L3)
          Length = 230

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 422 LRKLDGLKPFPWVDVLTSDFTLSKNVLEAC 333
           L +LDG KPFP     TSD TL ++ +E C
Sbjct: 180 LYELDGRKPFPINHGETSDETLLEDAIEVC 209

>FXR1_MOUSE (Q61584) Fragile X mental retardation syndrome-related protein 1|
          Length = 677

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 391 GNGFKPSSLRRPTPKIGYFDAEKSVEQKAGARA 489
           G GF+PSS R P  + GY   E +V    G+R+
Sbjct: 379 GMGFRPSSTRGPEREKGYATDESTVSSVQGSRS 411

>DHE4_GORGO (Q64I01) Glutamate dehydrogenase 2, mitochondrial precursor (EC|
           1.4.1.3) (GDH)
          Length = 558

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -2

Query: 360 IIKKCS*SLSFCNNLRPR*CGWRVVIALSGGRGQ*R*PCTKGLRCMT 220
           IIK C+  LS C  +R     W V+        Q R PC  G+R  T
Sbjct: 108 IIKPCNHVLSLCFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYST 154

>PCP_VIBVY (Q7MG84) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)|
           (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I)
           (PGP-I) (Pyrase)
          Length = 212

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 182 FLGFQQHPL*GERVIHLRPLVQGHLHCPLPPERAMTTLQP 301
           F G Q H       +H R +  G +H PL PE+A  + QP
Sbjct: 147 FYGVQHH-------LHTRAIRSGFIHIPLLPEQASASNQP 179

>PCP_VIBVU (Q8D4N5) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)|
           (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I)
           (PGP-I) (Pyrase)
          Length = 212

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 182 FLGFQQHPL*GERVIHLRPLVQGHLHCPLPPERAMTTLQP 301
           F G Q H       +H R +  G +H PL PE+A  + QP
Sbjct: 147 FYGVQHH-------LHTRAIRSGFIHIPLLPEQASASNQP 179


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,084,314
Number of Sequences: 219361
Number of extensions: 1850081
Number of successful extensions: 4871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4868
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)