ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9h18 |
|---|---|
| Clone Library Name | barley_pub |
>Y443_METJA (Q57885) Hypothetical protein MJ0443| Length = 227 Score = 42.7 bits (99), Expect = 4e-04 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 2/112 (1%) Frame = -1 Query: 444 KCADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLS--RAIGRLSGKGGK 271 K D V A GF+ +AL + D YV E+ D++ S R GR+ GK GK Sbjct: 72 KARDIVRAIGRGFN--PEIALKLVSDEYV--LEVIDIEDYASSDNSIRRLKGRVIGKEGK 127 Query: 270 TKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKL 115 ++ IE+ T + + + I+G +++A++++ L+ G+ K Y L Sbjct: 128 SRRYIESLTGANVSVYGNTVAIVGEHEPVQIAKEAVEMLLRGASHAKTYKFL 179
>MAD50_ORYSA (Q9XJ60) MADS-box transcription factor 50 (OsMADS50) (Protein| SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like) (OsSOC1) (Protein AGAMOUS-like 20) (RMADS208) Length = 230 Score = 33.9 bits (76), Expect = 0.19 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = -1 Query: 276 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSA 100 GKT+ IEN T ++ + + +L + V D+ +LI+ SP GK+Y A + Sbjct: 4 GKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQ 63 Query: 99 RLAERY 82 + ERY Sbjct: 64 KTIERY 69
>DNAK_PSESM (Q87WP0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 33.5 bits (75), Expect = 0.25 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = -1 Query: 381 LRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 202 +RL D +VD F+ + +L+G+ L A+ RL K K + +ST+T + + Sbjct: 234 IRLIDYFVDEFKKESGMSLKGDPL--AMQRLKEAAEKAKIELSSSTQTEVNLPYITADAT 291 Query: 201 G-SFVNIKVARDSLCSLI 151 G + +K++R L SL+ Sbjct: 292 GPKHLVVKISRSKLESLV 309
>DNAK_PSEU2 (Q4ZNP7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 33.1 bits (74), Expect = 0.33 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = -1 Query: 381 LRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 202 +RL D +VD F+ + L+G+ L A+ RL K K + +ST+T + + Sbjct: 234 IRLIDYFVDEFKKESGMNLKGDPL--AMQRLKEAAEKAKIELSSSTQTEVNLPYITADAT 291 Query: 201 G-SFVNIKVARDSLCSLI 151 G + +K++R L SL+ Sbjct: 292 GPKHLVVKISRSKLESLV 309
>DNAK_PSE14 (Q48E62) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 33.1 bits (74), Expect = 0.33 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = -1 Query: 381 LRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 202 +RL D +VD F+ + L+G+ L A+ RL K K + +ST+T + + Sbjct: 234 IRLIDYFVDEFKKESGMNLKGDPL--AMQRLKEAAEKAKIELSSSTQTEVNLPYITADAT 291 Query: 201 G-SFVNIKVARDSLCSLI 151 G + +K++R L SL+ Sbjct: 292 GPKHLVVKISRSKLESLV 309
>PLXB2_HUMAN (O15031) Plexin-B2 precursor (MM1)| Length = 1838 Score = 32.7 bits (73), Expect = 0.43 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -2 Query: 134 ARSILSLGLYLLGWQKGI-S*VWVTLCSCGFGLVSCCICRFVSP 6 A L L LY+ + K I S + VTL +C FG C +CR +P Sbjct: 732 ANETLPLHLYVKSYGKNIDSKLHVTLYNCSFGRSDCSLCRAANP 775
>MADS2_ORYSA (Q40702) MADS-box transcription factor 2 (OsMADS2) (RMADS219)| (NMADS1) Length = 209 Score = 32.0 bits (71), Expect = 0.73 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Frame = -1 Query: 285 GKGGKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYS--KLR 112 G+G IENST ++ + + IL I V D+ +++ S AGK+Y + Sbjct: 2 GRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPK 61 Query: 111 AVSARLAERY*LSLGHIM 58 +R+ E+Y + G I+ Sbjct: 62 TSLSRILEKYQTNSGKIL 79
>Y078_NANEQ (Q74MJ0) UPF0027 protein NEQ078| Length = 477 Score = 32.0 bits (71), Expect = 0.73 Identities = 23/54 (42%), Positives = 31/54 (57%) Frame = -1 Query: 414 LGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIE 253 +GFDI GV LLR + L +D EIKD L + R + G+GGK K +I+ Sbjct: 91 VGFDINCGVRLLRTN-LTID--EIKDRLNLLVNEIFRNVPAGVGEGGKLKLSID 141
>SOC1_ARATH (O64645) SUPPRESSOR OF CONSTANS OVEREXPRESSION 1 protein| (Agamous-like MADS-box protein AGL20) Length = 214 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = -1 Query: 276 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSA 100 GKT+ IEN+T ++ + + +L + V D+ SLI+ SP GK+Y + Sbjct: 4 GKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQ 63 Query: 99 RLAERY 82 +RY Sbjct: 64 DTIDRY 69
>NU124_SCHPO (Q09904) Nucleoporin nup124 (Nuclear pore protein nup124)| Length = 1159 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/53 (35%), Positives = 32/53 (60%) Frame = +2 Query: 287 DRRPMARDRCSPRSVFTSLISKESTYRSSRRSKATPSAMSNPSIKACTKSAHF 445 + +P+++D +P+S F+S +KEST +R+S+ P PS KS+HF Sbjct: 431 EHQPLSKDTEAPKSQFSSSPTKEST---TRKSEVEP-----PSPSKEIKSSHF 475
>AGL13_ARATH (Q38837) Agamous-like MADS-box protein AGL13| Length = 244 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/68 (29%), Positives = 29/68 (42%) Frame = -1 Query: 285 GKGGKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAV 106 G+G IEN ++ + K +L + V D+ SLI+ S GK+Y Sbjct: 2 GRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVG 61 Query: 105 SARLAERY 82 R ERY Sbjct: 62 VGRTIERY 69
>AGL19_ARATH (O82743) Agamous-like MADS-box protein AGL19| Length = 219 Score = 30.4 bits (67), Expect = 2.1 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = -1 Query: 276 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSA 100 GKT+ IEN+T ++ + + +L + V D+ +L++ SP K+Y + A Sbjct: 4 GKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIA 63 Query: 99 RLAERY 82 ERY Sbjct: 64 ATIERY 69
>CBIO2_SULSO (Q97WT4) Putative cobalt import ATP-binding protein cbiO 2| Length = 530 Score = 30.4 bits (67), Expect = 2.1 Identities = 22/78 (28%), Positives = 39/78 (50%) Frame = -1 Query: 438 ADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYA 259 ADF+++ LG +I D + L+ + F D + LR + R R+ GKG + Sbjct: 234 ADFLYS--LGLEIPDYMLFLKKN-----GFRKIDYEYLRKTYTYRPPSRIGGKGEALYAS 286 Query: 258 IENSTRTRIVIADTKIHI 205 ++ T+ I + +TKI + Sbjct: 287 VKVKTKNGIYLINTKISL 304
>AGL14_ARATH (Q38838) Agamous-like MADS-box protein AGL14| Length = 221 Score = 30.4 bits (67), Expect = 2.1 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Frame = -1 Query: 276 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVS- 103 GKT+ IEN+T ++ + + +L + V D+ +LI+ SP GK+Y + S Sbjct: 4 GKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSI 63 Query: 102 ARLAERY 82 + ERY Sbjct: 64 PKTVERY 70
>TRFM_MOUSE (Q9R0R1) Melanotransferrin precursor (Membrane-bound| transferrin-like protein p97) (MTf) Length = 738 Score = 29.6 bits (65), Expect = 3.6 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = -1 Query: 339 DVKTLRGEHLSRAIGRLSG--KGGKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDS 166 D TLRGE + RA G++ G YA E+ + + V+A + SF ++ Sbjct: 416 DAVTLRGEDIYRA-GKVYGLVPAAGELYAEEDRSNSYFVVAVARRDSSYSFTLDELRGKR 474 Query: 165 LCSLILGSPAG 133 C LGSPAG Sbjct: 475 SCHPYLGSPAG 485
>MRAW_MYCPU (Q98Q75) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 299 Score = 29.3 bits (64), Expect = 4.7 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = -1 Query: 315 HLSRAIGRLSGKG-----GKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSL 163 H S + +LS KG + +AIE S + I+D + I +FVN KV D + Sbjct: 34 HSSEILKKLSSKGKLIGFDQDSFAIEKSRQRLSQISDNFVLINDNFVNFKVYLDKM 89
>SYA_METKA (Q8TWY1) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 915 Score = 28.9 bits (63), Expect = 6.2 Identities = 13/49 (26%), Positives = 25/49 (51%) Frame = -1 Query: 348 EIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 202 E+KDV+ +RG R G + +G + + ++ R R+ T H++ Sbjct: 563 EVKDVQKVRGVVFHRIDGDVPPEGAEVECEVDGERRMRLTRNHTATHVI 611
>RPB2_TRYBB (P17546) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) Length = 1766 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -3 Query: 331 DTSGGASVACHWPPIGKRRQDQICHRE 251 D SG AS+ C W P+ + CHR+ Sbjct: 49 DQSGEASMICVWVPLTSNSACETCHRK 75
>RPB1_TRYBB (P17545) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) Length = 1766 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -3 Query: 331 DTSGGASVACHWPPIGKRRQDQICHRE 251 D SG AS+ C W P+ + CHR+ Sbjct: 49 DQSGEASMICVWVPLTSNSACETCHRK 75
>LAG3_CAEEL (Q09260) Protein lag-3 (Abnormal germ line proliferation protein 3)| (Abnormal cell lineage protein 3) Length = 490 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +3 Query: 291 GGQWHATDAPPEVSSHP*SQRNPHTGHQDEARQRHQQCQIQA*KHAQ 431 GG AT A + + QR HQ + Q+HQQ Q Q + AQ Sbjct: 406 GGGQFATQAHQQAAYMQQMQRMEQIRHQQQQAQQHQQAQQQHQQQAQ 452
>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21| Length = 1629 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 294 GQWHATDAPPEVSSHP*SQRNPHTGHQDEARQRHQQCQIQA*KHAQSPHTSE 449 GQ H P + P Q++ Q +A+Q+ Q Q+QA HAQ+ H ++ Sbjct: 1564 GQQH--QQPHQAQHQPQQQQSQQ--QQAQAKQQQPQQQVQAHAHAQAQHQAQ 1611
>PYRB_GLOVI (Q7NCV1) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 329 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = -1 Query: 231 VIADTKIHILGSFVNIKVARDSLCSLI 151 ++A KI I+G ++ +VAR +LCSL+ Sbjct: 173 LLAGKKIVIVGDILHSRVARSNLCSLV 199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,169,451 Number of Sequences: 219361 Number of extensions: 1364255 Number of successful extensions: 3773 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3667 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3772 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
