ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12g20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSR2_ARATH (O22892) Protein At2g40430 103 3e-22
2GSCR2_HUMAN (Q9NZM5) Glioma tumor suppressor candidate region ge... 47 5e-05
3GSCR2_CAEEL (Q9NEU5) Hypothetical protein Y39B6A.33 in chromosome V 33 0.42
4CH60_BIFAN (Q93M78) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 32 1.2
5EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48) 31 2.1
6CH60_BIFLO (Q8G879) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 31 2.7
7SYL_CHLTE (Q8KBY2) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 30 4.6
8MDTO_ECOLI (P32715) Multidrug resistance protein mdtO 30 6.0
9MDTO_ECO57 (Q8X5R8) Multidrug resistance protein mdtO 30 6.0

>GSR2_ARATH (O22892) Protein At2g40430|
          Length = 442

 Score =  103 bits (258), Expect = 3e-22
 Identities = 56/144 (38%), Positives = 81/144 (56%)
 Frame = +1

Query: 19  VLKRNPYIQPIPSSLMSXXXXXXXXXXXXXXQLQESREEKSVPMEEDSTETNLDIWGGDA 198
           +LK+NP++Q +PSS                    E +  K V           D+WG D+
Sbjct: 77  ILKKNPFVQLVPSSKPKLKKSKKTIVI-------EDKAPKQVQKSVGDDSVMADLWGDDS 129

Query: 199 KGAALPKKGMKRLNKNRSTTSVIPAVEVEPQGCSFNPPHEAHQDALALAVADEMRKIYTK 378
           KG    +   +++ KN    S+I AVE+E  GCS+NP  E+HQD LA AVA EM+K+Y  
Sbjct: 130 KGEH--ESNPRKIFKN---PSIISAVEIEHPGCSYNPTTESHQDMLAEAVAQEMQKVYKT 184

Query: 379 ELGPTPVPLTVLGQAVAEEDKFFL 450
           ELGP PVPLT+ G  ++E++++FL
Sbjct: 185 ELGPAPVPLTIEGDTLSEDERYFL 208



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>GSCR2_HUMAN (Q9NZM5) Glioma tumor suppressor candidate region gene 2 protein|
           (p60)
          Length = 478

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 28/76 (36%), Positives = 38/76 (50%)
 Frame = +1

Query: 217 KKGMKRLNKNRSTTSVIPAVEVEPQGCSFNPPHEAHQDALALAVADEMRKIYTKELGPTP 396
           KKG+KR  +  +  S  PAVEV P G S+NP  E HQ  L+ A   E+++    E     
Sbjct: 219 KKGVKRPARLHTKPSQAPAVEVAPAGASYNPSFEDHQTLLSAAHEVELQRQKEAEKLERQ 278

Query: 397 VPLTVLGQAVAEEDKF 444
           + L    QA  +E  F
Sbjct: 279 LALPATEQAATQESTF 294



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>GSCR2_CAEEL (Q9NEU5) Hypothetical protein Y39B6A.33 in chromosome V|
          Length = 438

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 247 RSTTSVIPAVEVEPQGCSFNPPHEAHQDALALAVADEMRKI 369
           +S TS++PAV++   G S+NP    +Q+ +A    +E + I
Sbjct: 173 KSITSLLPAVQIAEGGASYNPESAEYQEYVAKIAGEEQKLI 213



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>CH60_BIFAN (Q93M78) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat|
           shock protein 60)
          Length = 537

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
 Frame = +1

Query: 157 DSTETNLDIWGGDAKGAALPKKGM----KRLNKNRSTTS--VIPAVEVEPQGCSFNPPHE 318
           +  E + ++ G +A GAA+   G+    K++ +N   +   VI  V   P+G  FN   +
Sbjct: 422 EKVEKDFNLEGDEATGAAIVFSGIEAPIKQIAENAGLSGAVVIDKVRSLPEGEGFNAATD 481

Query: 319 AHQDALALAVADEMR 363
            ++D +A  V D ++
Sbjct: 482 TYEDLMAAGVTDPVK 496



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>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/50 (34%), Positives = 31/50 (62%)
 Frame = +1

Query: 112  QLQESREEKSVPMEEDSTETNLDIWGGDAKGAALPKKGMKRLNKNRSTTS 261
            +L++  EE+    EE+++  + D+  GD+K A   KK  K+ +KN+S+ S
Sbjct: 1519 ELEQEEEERK--REENTSNESTDVTKGDSKNA--KKKNNKKTSKNKSSLS 1564



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>CH60_BIFLO (Q8G879) 60 kDa chaperonin (Protein Cpn60) (groEL protein)|
          Length = 541

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = +1

Query: 157 DSTETNLDIWGGDAKGAALPKKGM----KRLNKNRSTTS--VIPAVEVEPQGCSFNPPHE 318
           + TE    + G +A GAA+  + +    K++ +N   +   VI  V   P G  FN   +
Sbjct: 425 EKTEAVTSLTGEEATGAAIVFRAIEAPIKQIAENAGVSGDVVINTVRSLPDGEGFNAATD 484

Query: 319 AHQDALALAVADEMR 363
            ++D LA  V D ++
Sbjct: 485 TYEDLLAAGVTDPVK 499



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>SYL_CHLTE (Q8KBY2) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 807

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -2

Query: 190 HPRCRGSSQLNPLPWEHFFLPVTPAVAFSLRAS*TSSCPSLTSKK 56
           + RC+G + L+P+ W+ F L   PA  F+++   T + P LT++K
Sbjct: 64  YKRCQGHNVLHPMGWDAFGL---PAEQFAIK---TGTHPRLTTEK 102



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>MDTO_ECOLI (P32715) Multidrug resistance protein mdtO|
          Length = 683

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 279 FNRRNHRCGRPIFIKPFHSLFGQSSPFSISTPDVEVRLS 163
           F  R HR G   F     +++GQ+ P  +  P+V VRL+
Sbjct: 118 FLMRTHRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLT 156



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>MDTO_ECO57 (Q8X5R8) Multidrug resistance protein mdtO|
          Length = 683

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 279 FNRRNHRCGRPIFIKPFHSLFGQSSPFSISTPDVEVRLS 163
           F  R HR G   F     +++GQ+ P  +  P+V VRL+
Sbjct: 118 FLMRTHRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLT 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,876,063
Number of Sequences: 219361
Number of extensions: 1006661
Number of successful extensions: 2145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2143
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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