Clone Information

BLAST Search Result

Clone Name	bags12g14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009545.1\| Triticum aestivum clone wr1.pk148.e12:fis, full i...	563	e-157
2	ref\|XM_470138.1\| Oryza sativa (japonica cultivar-group), mRNA	103	5e-19
3	dbj\|AK105744.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	103	5e-19
4	dbj\|AK058941.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	103	5e-19
5	gb\|AY542311.1\| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ...	96	1e-16
6	ref\|XM_470137.1\| Oryza sativa (japonica cultivar-group), mRNA	78	3e-11
7	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	78	3e-11
8	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
9	gb\|AC104433.8\| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ...	78	3e-11
10	ref\|XM_473455.1\| Oryza sativa (japonica cultivar-group), predic...	74	4e-10
11	emb\|X80820.1\|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing f...	74	4e-10
12	dbj\|AK069329.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	74	4e-10
13	gb\|AY112267.1\| Zea mays CL5157_2 mRNA sequence	74	4e-10
14	gb\|AY104025.1\| Zea mays PCO095832 mRNA sequence	74	4e-10
15	emb\|X97726.1\|ZMABP3 Z.mays ZmABP3 mRNA for actin depolymerizing ...	72	2e-09
16	emb\|X97725.1\|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing ...	72	2e-09
17	gb\|AY109068.1\| Zea mays PCO068743 mRNA sequence	68	3e-08
18	gb\|BT016543.1\| Zea mays clone Contig376 mRNA sequence	64	4e-07
19	gb\|BT018082.1\| Zea mays clone EL01N0552A09.c mRNA sequence	64	4e-07
20	gb\|AY103749.1\| Zea mays PCO115125 mRNA sequence	64	4e-07
21	emb\|AL606647.3\|OSJN00096 Oryza sativa genomic DNA, chromosome 4,...	62	2e-06
22	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	62	2e-06
23	ref\|XM_478113.1\| Oryza sativa (japonica cultivar-group), mRNA	58	3e-05
24	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
25	dbj\|AP005465.5\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
26	dbj\|AK072662.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	3e-05
27	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
28	dbj\|AP004037.3\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
29	dbj\|AK069605.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
30	gb\|U58278.1\|TAU58278 Triticum aestivum actin-binding protein WCO...	48	0.024
31	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	44	0.38
32	gb\|AC135102.16\| Medicago truncatula clone mth2-8m3, complete seq...	44	0.38
33	gb\|AC141106.9\| Medicago truncatula clone mth2-33e18, complete se...	44	0.38
34	gb\|AC157758.4\| Medicago truncatula clone mth2-62b13, complete se...	44	0.38
35	dbj\|AP004908.1\| Lotus japonicus genomic DNA, chromosome 6, clone...	44	0.38
36	gb\|AC115883.13\| Mus musculus chromosome 3, clone RP24-376N4, com...	42	1.5
37	ref\|XM_811053.1\| Trypanosoma cruzi strain CL Brener hypothetical...	42	1.5
38	ref\|NM_173884.2\| Bos taurus tyrosine hydroxylase (TH), mRNA	40	5.9
39	gb\|AC124549.5\| Mus musculus BAC clone RP23-284E24 from 13, compl...	40	5.9
40	dbj\|AP008230.1\| Desulfitobacterium hafniense Y51 genomic DNA, co...	40	5.9
41	gb\|AC068907.53\| Mus musculus strain C57BL/6J clone rp23-347f7 ma...	40	5.9
42	gb\|AF195612.1\|AF195612 Lophopyrum elongatum actin depolymerizati...	40	5.9
43	gb\|AF196350.1\|AF196350 Lophopyrum elongatum actin depolymerizati...	40	5.9
44	emb\|AL626775.11\| Mouse DNA sequence from clone RP23-325M14 on ch...	40	5.9
45	gb\|M36705.1\|BOVTYRHAA Bovine tyrosine hydroxylase mRNA, complete...	40	5.9
46	gb\|M36794.1\|BOVTHA Bovine tyrosine hydroxylase mRNA, complete cds	40	5.9

>gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full insert mRNA
           sequence
          Length = 2114

 Score =  563 bits (284), Expect = e-157
 Identities = 323/336 (96%)
 Strand = Plus / Minus

                                                                       
Query: 88  ccgcttcataacctacaggctggagaaccagaaggaggtcattgtggaccaaaccgggca 147
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 623 ccgcttcataacctacaggctggagaaccagaaggaggtcattgtggaccaaactgggga 564

                                                                       
Query: 148 gcgcgatgccacctatgaggatttcaccaagaccctccctgaaaacgactgccgattcgc 207
           ||| || || ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 563 gcgtgaggcaacctatgaggacttcaccaagaccctccctgagaacgactgccgattcgc 504

                                                                       
Query: 208 agtgtttgacttcgacttcaccaccccggaggatgtgccaaagagcaggatcttctatat 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agtgtttgacttcgacttcaccaccccggaggatgtgccaaagagcaggatcttctatat 444

                                                                       
Query: 268 cttctggtccccagacaccgcaaaggtgaggagcaagatgacgtacgcaagcaccaacga 327
           |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 cttctggtcccccgacacggcaaaggtgaggagcaagatgacgtacgcgagcaccaacga 384

                                                                       
Query: 328 gaagttcaagaggaccctggacggcatccagatcgagatgcaggccaccgaccccagcga 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaagttcaagaggaccctggacggcatccagatcgagatgcaggccaccgaccccagcga 324

                                               
Query: 388 aatcagcctggacgtgatcaaggagcgcgcacacta 423
           ||| ||||| |||||||||||||||||||| |||||
Sbjct: 323 aatgagcctcgacgtgatcaaggagcgcgcgcacta 288

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>ref|XM_470138.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 778

 Score =  103 bits (52), Expect = 5e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                       
Query: 236 gaggatgtgccaaagagcaggatcttctatatcttctggtccccagacaccgcaaaggtg 295
           ||||||||||||||||||||||| ||||||||||| |||||||||||||  ||||| |||
Sbjct: 367 gaggatgtgccaaagagcaggatattctatatcttatggtccccagacaatgcaaaagtg 426

                       
Query: 296 aggagcaagatg 307
           ||||||||||||
Sbjct: 427 aggagcaagatg 438



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 38  catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 97
           ||||| || |||||||||| ||||   |||||  ||||||| ||||||||||||||||||
Sbjct: 166 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 225

             
Query: 98  ac 99
           ||
Sbjct: 226 ac 227

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>dbj|AK105744.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B04, full
            insert sequence
          Length = 2390

 Score =  103 bits (52), Expect = 5e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                        
Query: 236  gaggatgtgccaaagagcaggatcttctatatcttctggtccccagacaccgcaaaggtg 295
            ||||||||||||||||||||||| ||||||||||| |||||||||||||  ||||| |||
Sbjct: 1976 gaggatgtgccaaagagcaggatattctatatcttatggtccccagacaatgcaaaagtg 2035

                        
Query: 296  aggagcaagatg 307
            ||||||||||||
Sbjct: 2036 aggagcaagatg 2047



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                        
Query: 38   catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 97
            ||||| || |||||||||| ||||   |||||  ||||||| ||||||||||||||||||
Sbjct: 1775 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 1834

              
Query: 98   ac 99
            ||
Sbjct: 1835 ac 1836

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>dbj|AK058941.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H02, full
           insert sequence
          Length = 758

 Score =  103 bits (52), Expect = 5e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                       
Query: 236 gaggatgtgccaaagagcaggatcttctatatcttctggtccccagacaccgcaaaggtg 295
           ||||||||||||||||||||||| ||||||||||| |||||||||||||  ||||| |||
Sbjct: 349 gaggatgtgccaaagagcaggatattctatatcttatggtccccagacaatgcaaaagtg 408

                       
Query: 296 aggagcaagatg 307
           ||||||||||||
Sbjct: 409 aggagcaagatg 420



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 38  catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 97
           ||||| || |||||||||| ||||   |||||  ||||||| ||||||||||||||||||
Sbjct: 148 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 207

             
Query: 98  ac 99
           ||
Sbjct: 208 ac 209

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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
              hypothetical protein, putative NAM protein, putative
              cis-zeatin O-glucosyltransferases, putative small nuclear
              ribonucleoprotein, putative cis-zeatin
              O-glucosyltransferase, putative glutathione peroxidase,
              putative copper-exporting ATPases, putative
              serine/threonine dehydratase, and putative actin
              depolymerizing factor genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 157237

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 108/128 (84%)
 Strand = Plus / Plus

                                                                          
Query: 273    ggtccccagacaccgcaaaggtgaggagcaagatgacgtacgcaagcaccaacgagaagt 332
              ||||||| |||||| | ||||||||||||||||||  |||||| ||| |||| ||   ||
Sbjct: 148289 ggtccccggacacctcgaaggtgaggagcaagatgctgtacgcgagctccaaggaccggt 148348

                                                                          
Query: 333    tcaagaggaccctggacggcatccagatcgagatgcaggccaccgaccccagcgaaatca 392
              ||||||||   ||||||||||||||| | ||| |||||||||||||||||||||| || |
Sbjct: 148349 tcaagagggagctggacggcatccaggtggagctgcaggccaccgaccccagcgagatga 148408

                      
Query: 393    gcctggac 400
              || |||||
Sbjct: 148409 gcatggac 148416

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>ref|XM_470137.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 703

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Plus

                                                                       
Query: 293 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 352
           |||||||||||||||  |||||| ||| |||||||   |||||||| |   || ||||||
Sbjct: 415 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 474

                                                                      
Query: 353 atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 411
            ||||||||||  ||||||||||||||||||||||  ||| ||| |||||| |||||||
Sbjct: 475 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 533

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Plus

                                                                            
Query: 293      gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 352
                |||||||||||||||  |||||| ||| |||||||   |||||||| |   || ||||||
Sbjct: 34127183 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 34127242

                                                                           
Query: 353      atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 411
                 ||||||||||  ||||||||||||||||||||||  ||| ||| |||||| |||||||
Sbjct: 34127243 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 34127301



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 236      gaggatgtgccaaagagcaggatcttctatatcttctggt 275
                ||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 34129803 gaggatgtgccaaagagcaggatattctatatcttatggt 34129842



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                            
Query: 38       catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 97
                ||||| || |||||||||| ||||   |||||  ||||||| ||||||||||||||||||
Sbjct: 34129602 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 34129661

                  
Query: 98       ac 99
                ||
Sbjct: 34129662 ac 34129663



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 273      ggtccccagacaccgcaaaggtgaggagcaagatg 307
                ||||||||||||  ||||| |||||||||||||||
Sbjct: 34129929 ggtccccagacaatgcaaaagtgaggagcaagatg 34129963

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Plus

                                                                            
Query: 293      gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 352
                |||||||||||||||  |||||| ||| |||||||   |||||||| |   || ||||||
Sbjct: 34217655 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 34217714

                                                                           
Query: 353      atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 411
                 ||||||||||  ||||||||||||||||||||||  ||| ||| |||||| |||||||
Sbjct: 34217715 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 34217773



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 236      gaggatgtgccaaagagcaggatcttctatatcttctggt 275
                ||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 34220275 gaggatgtgccaaagagcaggatattctatatcttatggt 34220314



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                            
Query: 38       catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 97
                ||||| || |||||||||| ||||   |||||  ||||||| ||||||||||||||||||
Sbjct: 34220074 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 34220133

                  
Query: 98       ac 99
                ||
Sbjct: 34220134 ac 34220135



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 273      ggtccccagacaccgcaaaggtgaggagcaagatg 307
                ||||||||||||  ||||| |||||||||||||||
Sbjct: 34220401 ggtccccagacaatgcaaaagtgaggagcaagatg 34220435

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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
             sequence
          Length = 163828

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Plus

                                                                         
Query: 293   gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 352
             |||||||||||||||  |||||| ||| |||||||   |||||||| |   || ||||||
Sbjct: 90995 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 91054

                                                                        
Query: 353   atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 411
              ||||||||||  ||||||||||||||||||||||  ||| ||| |||||| |||||||
Sbjct: 91055 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 91113



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 236   gaggatgtgccaaagagcaggatcttctatatcttctggt 275
             ||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 93615 gaggatgtgccaaagagcaggatattctatatcttatggt 93654



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 38    catgacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcata 97
             ||||| || |||||||||| ||||   |||||  ||||||| ||||||||||||||||||
Sbjct: 93414 catgatgattgcaagctgaagttcaatgagctacagtccaaaaggatgcaccgcttcata 93473

               
Query: 98    ac 99
             ||
Sbjct: 93474 ac 93475



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 273   ggtccccagacaccgcaaaggtgaggagcaagatg 307
             ||||||||||||  ||||| |||||||||||||||
Sbjct: 93741 ggtccccagacaatgcaaaagtgaggagcaagatg 93775

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>ref|XM_473455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 420

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 124/153 (81%)
 Strand = Plus / Plus

                                                                       
Query: 248 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 307
           ||||||| ||||||||  |||| |||||| || |||||  | ||||||||||||||||||
Sbjct: 244 aagagcaagatcttcttcatctcctggtcgccggacacgtcgaaggtgaggagcaagatg 303

                                                                       
Query: 308 acgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatccagatcgagatg 367
             |||||| ||| |||| ||   ||||||||||   |||||||| |||||| | ||| ||
Sbjct: 304 ctgtacgcgagctccaaggaccggttcaagagggagctggacgggatccaggtggagctg 363

                                            
Query: 368 caggccaccgaccccagcgaaatcagcctggac 400
           ||||| ||||| |||||||| || ||| |||||
Sbjct: 364 caggcgaccgatcccagcgagatgagcatggac 396

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>emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing factor
          Length = 589

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 296 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 355
           ||||||||||||  |||||| ||| |||| || | ||||| ||||   ||||||||||||
Sbjct: 374 aggagcaagatgctgtacgccagctccaaggacaggttcaggagggagctggacggcatc 433

                                                    
Query: 356 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 396
           |||  |||||| |||||||||||||||||||| || |||||
Sbjct: 434 cagtgcgagatccaggccaccgaccccagcgagatgagcct 474

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>dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018P16, full
           insert sequence
          Length = 778

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 124/153 (81%)
 Strand = Plus / Plus

                                                                       
Query: 248 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 307
           ||||||| ||||||||  |||| |||||| || |||||  | ||||||||||||||||||
Sbjct: 330 aagagcaagatcttcttcatctcctggtcgccggacacgtcgaaggtgaggagcaagatg 389

                                                                       
Query: 308 acgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatccagatcgagatg 367
             |||||| ||| |||| ||   ||||||||||   |||||||| |||||| | ||| ||
Sbjct: 390 ctgtacgcgagctccaaggaccggttcaagagggagctggacgggatccaggtggagctg 449

                                            
Query: 368 caggccaccgaccccagcgaaatcagcctggac 400
           ||||| ||||| |||||||| || ||| |||||
Sbjct: 450 caggcgaccgatcccagcgagatgagcatggac 482

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>gb|AY112267.1| Zea mays CL5157_2 mRNA sequence
          Length = 779

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 124/153 (81%)
 Strand = Plus / Minus

                                                                       
Query: 248 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 307
           ||||||| |||||| |  |||| ||||||||| |||||| | | ||| ||||||||||||
Sbjct: 573 aagagcaagatcttgttcatctcctggtccccggacacctcgagggtcaggagcaagatg 514

                                                                       
Query: 308 acgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatccagatcgagatg 367
              ||||| ||| |||| ||   ||||||||||   ||||| ||||||||| | ||| ||
Sbjct: 513 ctttacgcgagctccaaggaccggttcaagagggagctggagggcatccagctggagctg 454

                                            
Query: 368 caggccaccgaccccagcgaaatcagcctggac 400
           |||||||||||||||||||| || ||| |||||
Sbjct: 453 caggccaccgaccccagcgagatgagcatggac 421

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>gb|AY104025.1| Zea mays PCO095832 mRNA sequence
          Length = 894

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 296 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 355
           ||||||||||||  |||||| ||| |||| || | ||||| ||||   ||||||||||||
Sbjct: 360 aggagcaagatgctgtacgccagctccaaggacaggttcaggagggagctggacggcatc 419

                                                    
Query: 356 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 396
           |||  |||||| |||||||||||||||||||| || |||||
Sbjct: 420 cagtgcgagatccaggccaccgaccccagcgagatgagcct 460

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>emb|X97726.1|ZMABP3 Z.mays ZmABP3 mRNA for actin depolymerizing factor
          Length = 801

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                       
Query: 248 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 307
           ||||||||||||||||||||| | |||||||||  | |||| ||||||| ||||||||||
Sbjct: 388 aagagcaggatcttctatatcctatggtccccatcctccgccaaggtgaagagcaagatg 447

                                           
Query: 308 acgtacgcaagcaccaacgagaagttcaagag 339
              ||||||||| | ||| |||| ||||||||
Sbjct: 448 ctttacgcaagctcaaaccagaaattcaagag 479



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 72  agtccaagaggatgcaccgcttcataac 99
           |||| |||||| ||||||||||||||||
Sbjct: 209 agtcgaagaggctgcaccgcttcataac 236

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>emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing factor
          Length = 546

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 297 ggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatcc 356
           |||||||||||  |||||| ||| |||| || | ||||| ||||   |||||||||||||
Sbjct: 312 ggagcaagatgctgtacgccagctccaaggacaggttcaggagggagctggacggcatcc 371

                                                   
Query: 357 agatcgagatgcaggccaccgaccccagcgaaatcagcct 396
           ||  |||||| |||||||||||||||||||| || |||||
Sbjct: 372 agtgcgagatccaggccaccgaccccagcgagatgagcct 411

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>gb|AY109068.1| Zea mays PCO068743 mRNA sequence
          Length = 731

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 41  gacgactgcaagctgaggttcgtggagctcaagtccaagaggatgcaccgcttcataacc 100
           |||||||||||||   ||||| ||||||||||| ||||||||| |||||||||||| | |
Sbjct: 161 gacgactgcaagcgccggttcctggagctcaaggccaagaggacgcaccgcttcatcatc 220

                 
Query: 101 tacagg 106
           ||||||
Sbjct: 221 tacagg 226



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 71/87 (81%)
 Strand = Plus / Plus

                                                                       
Query: 293 gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 352
           ||||||||||||||||  ||||| ||| |||| |||| ||||||| ||   |||||||||
Sbjct: 416 gtgaggagcaagatgatctacgccagctccaaggagaggttcaagcgggagctggacggc 475

                                      
Query: 353 atccagatcgagatgcaggccaccgac 379
           || ||| | ||  | ||||||||||||
Sbjct: 476 attcaggtggatctccaggccaccgac 502

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>gb|BT016543.1| Zea mays clone Contig376 mRNA sequence
          Length = 881

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 248 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 307
           ||||||||||||||||||||| | |||||||||  | |||| ||||||| ||||||||||
Sbjct: 414 aagagcaggatcttctatatcctatggtccccatcctccgccaaggtgaagagcaagatg 473



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 72  agtccaagaggatgcaccgcttcataac 99
           |||| |||||| ||||||||||||||||
Sbjct: 235 agtcgaagaggctgcaccgcttcataac 262

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>gb|BT018082.1| Zea mays clone EL01N0552A09.c mRNA sequence
          Length = 837

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 248 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 307
           ||||||||||||||||||||| | |||||||||  | |||| ||||||| ||||||||||
Sbjct: 387 aagagcaggatcttctatatcctatggtccccatcctccgccaaggtgaagagcaagatg 446

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>gb|AY103749.1| Zea mays PCO115125 mRNA sequence
          Length = 965

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                       
Query: 248 aagagcaggatcttctatatcttctggtccccagacaccgcaaaggtgaggagcaagatg 307
           ||||||||||||||||||||| | |||||||||  | |||| ||||||| ||||||||||
Sbjct: 437 aagagcaggatcttctatatcctatggtccccatcctccgccaaggtgaagagcaagatg 496



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 72  agtccaagaggatgcaccgcttcataac 99
           |||| |||||| ||||||||||||||||
Sbjct: 258 agtcgaagaggctgcaccgcttcataac 285

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>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
             complete sequence
          Length = 127506

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Minus

                                                                         
Query: 290   aaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggac 349
             ||||||||||||||||||  |||||| ||| |||| ||   ||||||||||   ||||||
Sbjct: 61509 aaggtgaggagcaagatgctgtacgcgagctccaaggaccggttcaagagggagctggac 61450

                                                                
Query: 350   ggcatccagatcgagatgcaggccaccgaccccagcgaaatcagcctggac 400
             || |||||| | ||| ||||||| ||||| |||||||| || ||| |||||
Sbjct: 61449 gggatccaggtggagctgcaggcgaccgatcccagcgagatgagcatggac 61399

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Minus

                                                                            
Query: 290      aaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggac 349
                ||||||||||||||||||  |||||| ||| |||| ||   ||||||||||   ||||||
Sbjct: 27792839 aaggtgaggagcaagatgctgtacgcgagctccaaggaccggttcaagagggagctggac 27792780

                                                                   
Query: 350      ggcatccagatcgagatgcaggccaccgaccccagcgaaatcagcctggac 400
                || |||||| | ||| ||||||| ||||| |||||||| || ||| |||||
Sbjct: 27792779 gggatccaggtggagctgcaggcgaccgatcccagcgagatgagcatggac 27792729

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>ref|XM_478113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 884

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                       
Query: 296 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 355
           ||||||||||||  |||||| ||| |||| || | ||||| ||||   |||||||| |||
Sbjct: 363 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 422

                                                    
Query: 356 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 396
           |||  |||||| |||||||| ||||||||||| || |||||
Sbjct: 423 cagtgcgagattcaggccacagaccccagcgagatgagcct 463

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                            
Query: 296      aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 355
                ||||||||||||  |||||| ||| |||| || | ||||| ||||   |||||||| |||
Sbjct: 17688190 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 17688249

                                                         
Query: 356      cagatcgagatgcaggccaccgaccccagcgaaatcagcct 396
                |||  |||||| |||||||| ||||||||||| || |||||
Sbjct: 17688250 cagtgcgagattcaggccacagaccccagcgagatgagcct 17688290

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>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                         
Query: 296   aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 355
             ||||||||||||  |||||| ||| |||| || | ||||| ||||   |||||||| |||
Sbjct: 92223 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 92282

                                                      
Query: 356   cagatcgagatgcaggccaccgaccccagcgaaatcagcct 396
             |||  |||||| |||||||| ||||||||||| || |||||
Sbjct: 92283 cagtgcgagattcaggccacagaccccagcgagatgagcct 92323

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>dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C12, full
           insert sequence
          Length = 884

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                       
Query: 296 aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 355
           ||||||||||||  |||||| ||| |||| || | ||||| ||||   |||||||| |||
Sbjct: 363 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 422

                                                    
Query: 356 cagatcgagatgcaggccaccgaccccagcgaaatcagcct 396
           |||  |||||| |||||||| ||||||||||| || |||||
Sbjct: 423 cagtgcgagattcaggccacagaccccagcgagatgagcct 463

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                            
Query: 292      ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 351
                ||||||||||||||||  ||| || ||| |||| ||   ||||||||||   ||||||||
Sbjct: 26938896 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 26938837

                                              
Query: 352      catccagatcgagatgcaggccaccgaccc 381
                ||||||| | ||| |||||||||| |||||
Sbjct: 26938836 catccaggtggagctgcaggccactgaccc 26938807

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>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1001_D02
          Length = 129081

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                          
Query: 292    ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 351
              ||||||||||||||||  ||| || ||| |||| ||   ||||||||||   ||||||||
Sbjct: 117439 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 117380

                                            
Query: 352    catccagatcgagatgcaggccaccgaccc 381
              ||||||| | ||| |||||||||| |||||
Sbjct: 117379 catccaggtggagctgcaggccactgaccc 117350

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>dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024H08, full
           insert sequence
          Length = 914

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                       
Query: 292 ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 351
           ||||||||||||||||  ||| || ||| |||| ||   ||||||||||   ||||||||
Sbjct: 417 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 476

                                         
Query: 352 catccagatcgagatgcaggccaccgaccc 381
           ||||||| | ||| |||||||||| |||||
Sbjct: 477 catccaggtggagctgcaggccactgaccc 506

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>gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCOR719 (Wcor719) mRNA,
           complete cds
          Length = 648

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 344 ctggacggcatccagatcgagatgcaggccaccgaccccagcga 387
           ||||||||| | ||||||||  |||||||||||||| |||||||
Sbjct: 427 ctggacggcgtgcagatcgacgtgcaggccaccgacgccagcga 470

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 375     ccgaccccagcgaaatcagcctggac 400
               ||||||||||||||||||||| ||||
Sbjct: 4866091 ccgaccccagcgaaatcagccgggac 4866116

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>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence
          Length = 144042

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 287   gcaaaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagagg 340
             |||| |||||| ||||||||||  || ||||||||||| || | ||||||||||
Sbjct: 67059 gcaagggtgagaagcaagatgatttatgcaagcaccaaagaaaggttcaagagg 67112

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>gb|AC141106.9| Medicago truncatula clone mth2-33e18, complete sequence
          Length = 105951

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 36    tccatgacgactgcaagctgaggttcgtggagctcaag 73
             ||||||| ||||||||| |||||||  |||||||||||
Sbjct: 24465 tccatgatgactgcaagttgaggtttatggagctcaag 24502

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>gb|AC157758.4| Medicago truncatula clone mth2-62b13, complete sequence
          Length = 106286

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 36    tccatgacgactgcaagctgaggttcgtggagctcaag 73
             ||||||| ||||||||| |||||||  |||||||||||
Sbjct: 92633 tccatgatgactgcaagttgaggtttatggagctcaag 92670

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>dbj|AP004908.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT12N11, TM0066,
             complete sequence
          Length = 79585

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 36    tccatgacgactgcaagctgaggttcgtggagctcaag 73
             ||||||| ||||||||||| |||||  |||||||||||
Sbjct: 29697 tccatgatgactgcaagctaaggtttatggagctcaag 29660

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>gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, complete sequence
          Length = 180645

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 326    gagaagttcaagaggaccctg 346
              |||||||||||||||||||||
Sbjct: 138067 gagaagttcaagaggaccctg 138047

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>ref|XM_811053.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510885.10) partial mRNA
          Length = 2424

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 104 aggctggagaaccagaaggag 124
           |||||||||||||||||||||
Sbjct: 28  aggctggagaaccagaaggag 8

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>ref|NM_173884.2| Bos taurus tyrosine hydroxylase (TH), mRNA
          Length = 1706

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 342  ccctggacggcatccagatcgagatgcaggcc 373
            ||||||||||| |||||  |||||||||||||
Sbjct: 1433 ccctggacggcgtccaggacgagatgcaggcc 1464

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>gb|AC124549.5| Mus musculus BAC clone RP23-284E24 from 13, complete sequence
          Length = 199240

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    gatgccacctatgaggattt 171
              ||||||||||||||||||||
Sbjct: 129527 gatgccacctatgaggattt 129508

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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 228     ccaccccggaggatgtgcca 247
               ||||||||||||||||||||
Sbjct: 5583276 ccaccccggaggatgtgcca 5583257

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>gb|AC068907.53| Mus musculus strain C57BL/6J clone rp23-347f7 map 13, complete sequence
          Length = 232472

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   gatgccacctatgaggattt 171
             ||||||||||||||||||||
Sbjct: 51786 gatgccacctatgaggattt 51767

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>gb|AF195612.1|AF195612 Lophopyrum elongatum actin depolymerization factor-like protein
           (ESI28) gene, complete cds
          Length = 1349

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 344 ctggacggcatccagatcgagatgcaggccaccgaccccagcga 387
           ||||||||| | || |||||  |||||||||||||| |||||||
Sbjct: 691 ctggacggcgtgcaaatcgacgtgcaggccaccgacgccagcga 734

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>gb|AF196350.1|AF196350 Lophopyrum elongatum actin depolymerization factor-like protein
           (ESI28) gene, complete cds
          Length = 1013

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 344 ctggacggcatccagatcgagatgcaggccaccgaccccagcga 387
           ||||||||| | || |||||  |||||||||||||| |||||||
Sbjct: 691 ctggacggcgtgcaaatcgacgtgcaggccaccgacgccagcga 734

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>emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on chromosome 4, complete
             sequence
          Length = 190641

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gctggagaaccagaaggagg 125
             ||||||||||||||||||||
Sbjct: 57679 gctggagaaccagaaggagg 57660

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>gb|M36705.1|BOVTYRHAA Bovine tyrosine hydroxylase mRNA, complete cds
          Length = 1706

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 342  ccctggacggcatccagatcgagatgcaggcc 373
            ||||||||||| |||||  |||||||||||||
Sbjct: 1433 ccctggacggcgtccaggacgagatgcaggcc 1464

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>gb|M36794.1|BOVTHA Bovine tyrosine hydroxylase mRNA, complete cds
          Length = 1696

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 342  ccctggacggcatccagatcgagatgcaggcc 373
            ||||||||||| |||||  |||||||||||||
Sbjct: 1429 ccctggacggcgtccaggacgagatgcaggcc 1460


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,908,281
Number of Sequences: 3902068
Number of extensions: 2908281
Number of successful extensions: 60248
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60017
Number of HSP's gapped (non-prelim): 223
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result