ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9h13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450193.1| Oryza sativa (japonica cultivar-group), mRNA 293 3e-76
2dbj|AK072690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
3gb|AY108424.1| Zea mays PCO149843 mRNA sequence 218 2e-53
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
5dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
6ref|XM_463904.1| Oryza sativa (japonica cultivar-group), mRNA 60 9e-06
7dbj|AK103704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
8dbj|AK060220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
10dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
11dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
12emb|CR962130.2| Medicago truncatula chromosome 5 clone mte1-63h2... 46 0.13
13gb|AF081803.1|AF081803 Xenopus laevis non-receptor protein tyros... 42 2.1
14gb|AC165257.2| Mus musculus BAC clone RP23-162D3 from chromosome... 42 2.1
15ref|XM_677376.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.1
16ref|XM_675477.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.1
17gb|AC125379.4| Mus musculus BAC clone RP23-53B19 from chromosome... 40 8.1
18gb|AC123954.4| Mus musculus BAC clone RP23-249L6 from 13, comple... 40 8.1
19gb|AC160978.4| Mus musculus BAC clone RP23-426B17 from chromosom... 40 8.1
20gb|AC114267.2| Homo sapiens chromosome 19 clone LLNLR_222F11, co... 40 8.1
21dbj|AB108686.1| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgp... 40 8.1
22dbj|AB108685.1| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgp... 40 8.1
23gb|AC113410.2| Homo sapiens chromosome 5 clone RP11-485M7, compl... 40 8.1
24gb|AC107058.4| Homo sapiens BAC clone RP11-633G11 from 4, comple... 40 8.1
25gb|AC011537.8| Homo sapiens chromosome 19 clone LLNLR-249E10, co... 40 8.1
26gb|AC159023.4| Pan troglodytes BAC clone CH251-506L16 from chrom... 40 8.1
27dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
28gb|AC108016.5| Homo sapiens BAC clone RP13-1015A13 from 4, compl... 40 8.1
29gb|AE014133.1| Streptococcus mutans UA159, complete genome 40 8.1
30dbj|AP006048.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
31dbj|BS000035.1| Pan troglodytes chromosome 22 clone:PTB-089G12, ... 40 8.1
32dbj|AB010970.1| Streptococcus mutans rmlD, rgpAc, rgpBc, rgpCc, ... 40 8.1 
>ref|XM_450193.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1812

 Score =  293 bits (148), Expect = 3e-76
 Identities = 235/264 (89%)
 Strand = Plus / Minus

                                                                        
Query: 335  ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 394
            |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 1812 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 1753

                                                                        
Query: 395  tccgtcgtgctcatctccaacctcctctgctattttcttaagagcttctaatatttcgga 454
            ||| || |||||||| |||||||||||||||||| ||| ||||| |||||||||||| ||
Sbjct: 1752 tccatcatgctcatcaccaacctcctctgctattctctgaagagtttctaatatttcaga 1693

                                                                        
Query: 455  gaaatctggcctttcagcagggtcctgctgccaacacttctgaagaagctccgtgagctt 514
            ||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |  || ||
Sbjct: 1692 gaaatctggtctttcagcaggctcctgttgccaacatttctgaagaagctcagaaagttt 1633

                                                                        
Query: 515  tgcatgcgcattttttggtattgtaggccgcaaccccttctgaaccacacctacagctgc 574
            |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1632 tgcatgagcattttttggtattgtaggccgtaatcccttctgaaccacacctacagctgc 1573

                                    
Query: 575  ttgtaatggtgtcaggtactcata 598
            ||||||||||||||||||||||||
Sbjct: 1572 ttgtaatggtgtcaggtactcata 1549
to top
>dbj|AK072690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139F03, full
            insert sequence
          Length = 2263

 Score =  293 bits (148), Expect = 3e-76
 Identities = 235/264 (89%)
 Strand = Plus / Minus

                                                                        
Query: 335  ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 394
            |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 1845 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 1786

                                                                        
Query: 395  tccgtcgtgctcatctccaacctcctctgctattttcttaagagcttctaatatttcgga 454
            ||| || |||||||| |||||||||||||||||| ||| ||||| |||||||||||| ||
Sbjct: 1785 tccatcatgctcatcaccaacctcctctgctattctctgaagagtttctaatatttcaga 1726

                                                                        
Query: 455  gaaatctggcctttcagcagggtcctgctgccaacacttctgaagaagctccgtgagctt 514
            ||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |  || ||
Sbjct: 1725 gaaatctggtctttcagcaggctcctgttgccaacatttctgaagaagctcagaaagttt 1666

                                                                        
Query: 515  tgcatgcgcattttttggtattgtaggccgcaaccccttctgaaccacacctacagctgc 574
            |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1665 tgcatgagcattttttggtattgtaggccgtaatcccttctgaaccacacctacagctgc 1606

                                    
Query: 575  ttgtaatggtgtcaggtactcata 598
            ||||||||||||||||||||||||
Sbjct: 1605 ttgtaatggtgtcaggtactcata 1582
to top
>gb|AY108424.1| Zea mays PCO149843 mRNA sequence
          Length = 1330

 Score =  218 bits (110), Expect = 2e-53
 Identities = 218/254 (85%)
 Strand = Plus / Minus

                                                                        
Query: 345  cgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctttccgtcgtgc 404
            |||||||||| || ||||||||| ||||||||  || ||||||||||||| || ||||||
Sbjct: 1179 cgccccctcaaagccgaaaagaaaccacccagtgttctgtccttgtgcttcccatcgtgc 1120

                                                                        
Query: 405  tcatctccaacctcctctgctattttcttaagagcttctaatatttcggagaaatctggc 464
            || ||||| ||||||||||||||| ||| ||||| |||||||||||||||||| ||||| 
Sbjct: 1119 tcctctccgacctcctctgctattctctgaagagtttctaatatttcggagaagtctggt 1060

                                                                        
Query: 465  ctttcagcagggtcctgctgccaacacttctgaagaagctccgtgagctttgcatgcgca 524
            ||||  | ||||||||||||||| || |||||||||||||| |  |||||||| || | |
Sbjct: 1059 ctttgggtagggtcctgctgccagcatttctgaagaagctcggaaagctttgcgtgagta 1000

                                                                        
Query: 525  ttttttggtattgtaggccgcaaccccttctgaaccacacctacagctgcttgtaatggt 584
            |  ||||| ||||||||||| || |||||||| |||||||| ||||| ||||||| ||| 
Sbjct: 999  tgctttggaattgtaggccgtaatcccttctgcaccacaccaacagcggcttgtagtgga 940

                          
Query: 585  gtcaggtactcata 598
            ||||||||||||||
Sbjct: 939  gtcaggtactcata 926
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Minus

                                                                            
Query: 413      aacctcctctgctattttcttaagagcttctaatatttcggagaaatctggcctttcagc 472
                |||||||||||||||| ||| ||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 21193383 aacctcctctgctattctctgaagagtttctaatatttcagagaaatctggtctttcagc 21193324

                                                                            
Query: 473      agggtcctgctgccaacacttctgaagaagctccgtgagctttgcatgcgcattttttgg 532
                ||| ||||| |||||||| |||||||||||||| |  || |||||||| |||||||||||
Sbjct: 21193323 aggctcctgttgccaacatttctgaagaagctcagaaagttttgcatgagcattttttgg 21193264

                            
Query: 533      tattgtaggccg 544
                ||||||||||||
Sbjct: 21193263 tattgtaggccg 21193252



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 49/49 (100%)
 Strand = Plus / Minus

                                                                 
Query: 550      ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 598
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21192767 ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 21192719



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                            
Query: 335      ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 394
                |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 21193533 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 21193474

                                       
Query: 395      tccgtcgtgctcatctccaacct 417
                ||| || |||||||| |||||||
Sbjct: 21193473 tccatcatgctcatcaccaacct 21193451
to top
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Minus

                                                                         
Query: 413   aacctcctctgctattttcttaagagcttctaatatttcggagaaatctggcctttcagc 472
             |||||||||||||||| ||| ||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 64140 aacctcctctgctattctctgaagagtttctaatatttcagagaaatctggtctttcagc 64081

                                                                         
Query: 473   agggtcctgctgccaacacttctgaagaagctccgtgagctttgcatgcgcattttttgg 532
             ||| ||||| |||||||| |||||||||||||| |  || |||||||| |||||||||||
Sbjct: 64080 aggctcctgttgccaacatttctgaagaagctcagaaagttttgcatgagcattttttgg 64021

                         
Query: 533   tattgtaggccg 544
             ||||||||||||
Sbjct: 64020 tattgtaggccg 64009



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 49/49 (100%)
 Strand = Plus / Minus

                                                              
Query: 550   ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 598
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63524 ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 63476



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 335   ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 394
             |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 64290 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 64231

                                    
Query: 395   tccgtcgtgctcatctccaacct 417
             ||| || |||||||| |||||||
Sbjct: 64230 tccatcatgctcatcaccaacct 64208
to top
>ref|XM_463904.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2251

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 549  cccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 598
            ||||||||||| |||||||  |||||||||| |||||| |||||||||||
Sbjct: 1711 cccttctgaacaacacctatggctgcttgtagtggtgttaggtactcata 1662
to top
>dbj|AK103704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136N12, full
            insert sequence
          Length = 2251

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 549  cccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 598
            ||||||||||| |||||||  |||||||||| |||||| |||||||||||
Sbjct: 1711 cccttctgaacaacacctatggctgcttgtagtggtgttaggtactcata 1662
to top
>dbj|AK060220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F01, full
           insert sequence
          Length = 1006

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 549 cccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 598
           ||||||||||| |||||||  |||||||||| |||||| |||||||||||
Sbjct: 550 cccttctgaacaacacctatggctgcttgtagtggtgttaggtactcata 501
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                
Query: 550     ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 598
               |||||||||| |||||||  |||||||||| |||||| |||||||||||
Sbjct: 1052342 ccttctgaacaacacctatggctgcttgtagtggtgttaggtactcata 1052390
to top
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1020_C02
          Length = 124578

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 550  ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 598
            |||||||||| |||||||  |||||||||| |||||| |||||||||||
Sbjct: 4866 ccttctgaacaacacctatggctgcttgtagtggtgttaggtactcata 4914
to top
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0088N06
          Length = 123454

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 550   ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 598
             |||||||||| |||||||  |||||||||| |||||| |||||||||||
Sbjct: 41050 ccttctgaacaacacctatggctgcttgtagtggtgttaggtactcata 41098
to top
>emb|CR962130.2| Medicago truncatula chromosome 5 clone mte1-63h20, COMPLETE SEQUENCE
          Length = 115239

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 550   ccttctgaaccacacctacagctgcttgtaatggtgtca 588
             ||||||| |||||||| || |||||||||||||| ||||
Sbjct: 64705 ccttctgcaccacaccaactgctgcttgtaatggggtca 64667
to top
>gb|AF081803.1|AF081803 Xenopus laevis non-receptor protein tyrosine kinase laloo mRNA,
            complete cds
          Length = 1491

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 472  cagggtcctgctgccaacact 492
            |||||||||||||||||||||
Sbjct: 1405 cagggtcctgctgccaacact 1385
to top
>gb|AC165257.2| Mus musculus BAC clone RP23-162D3 from chromosome 9, complete sequence
          Length = 181162

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    cagcaggcatccatctcaatg 245
              |||||||||||||||||||||
Sbjct: 105662 cagcaggcatccatctcaatg 105642
to top
>ref|XM_677376.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9199.2), mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 397 cgtcgtgctcatctccaacctcct 420
           |||||||||||||| |||||||||
Sbjct: 291 cgtcgtgctcatctacaacctcct 314
to top
>ref|XM_675477.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7300.2), mRNA
          Length = 2526

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 378  cttttgtccttgtgctttcc 397
            ||||||||||||||||||||
Sbjct: 1785 cttttgtccttgtgctttcc 1804
to top
>gb|AC125379.4| Mus musculus BAC clone RP23-53B19 from chromosome 12, complete sequence
          Length = 225930

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 422    tgctattttcttaagagcttctaa 445
              |||| |||||||||||||||||||
Sbjct: 122565 tgcttttttcttaagagcttctaa 122542
to top
>gb|AC123954.4| Mus musculus BAC clone RP23-249L6 from 13, complete sequence
          Length = 200727

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 53   ttacagccagttagaggaat 72
            ||||||||||||||||||||
Sbjct: 1628 ttacagccagttagaggaat 1609
to top
>gb|AC160978.4| Mus musculus BAC clone RP23-426B17 from chromosome 13, complete sequence
          Length = 197652

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     ttacagccagttagaggaat 72
              ||||||||||||||||||||
Sbjct: 122933 ttacagccagttagaggaat 122914
to top
>gb|AC114267.2| Homo sapiens chromosome 19 clone LLNLR_222F11, complete sequence
          Length = 38629

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 410   tccaacctcctctgctattttctt 433
             |||||||||||||||| |||||||
Sbjct: 17550 tccaacctcctctgctgttttctt 17573
to top
>dbj|AB108686.1| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgpE, rgpF, ORF1, ORF2,
            ORF3, ORF4, ORF12 genes for rhamnosyltransferase,
            rhamnosyltransferase, ABC transporter, ABC transporter,
            glucosyltransferase, rhamnosyltransferase, hypothetical
            proteins, complete cds, strain:LM7
          Length = 16442

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 525  ttttttggtattgtaggccg 544
            ||||||||||||||||||||
Sbjct: 2997 ttttttggtattgtaggccg 3016
to top
>dbj|AB108685.1| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgpE, rgpF, ORF1, ORF2,
            ORF3, ORF12 genes for rhamnosyltransferase,
            rhamnosyltransferase, ABC transporter, ABC transporter,
            glucosyltransferase, rhamnosyltransferase, hypothetical
            proteins, complete cds, strain:MT6219
          Length = 14730

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 525  ttttttggtattgtaggccg 544
            ||||||||||||||||||||
Sbjct: 3418 ttttttggtattgtaggccg 3437
to top
>gb|AC113410.2| Homo sapiens chromosome 5 clone RP11-485M7, complete sequence
          Length = 123851

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   tctctccctatgttacatgt 124
             ||||||||||||||||||||
Sbjct: 73748 tctctccctatgttacatgt 73729
to top
>gb|AC107058.4| Homo sapiens BAC clone RP11-633G11 from 4, complete sequence
          Length = 126135

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     atttcatgtgcaagttacag 58
              ||||||||||||||||||||
Sbjct: 101465 atttcatgtgcaagttacag 101446
to top
>gb|AC011537.8| Homo sapiens chromosome 19 clone LLNLR-249E10, complete sequence
          Length = 42056

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 410   tccaacctcctctgctattttctt 433
             |||||||||||||||| |||||||
Sbjct: 40411 tccaacctcctctgctgttttctt 40388
to top
>gb|AC159023.4| Pan troglodytes BAC clone CH251-506L16 from chromosome unknown,
             complete sequence
          Length = 180977

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   tctctccctatgttacatgt 124
             ||||||||||||||||||||
Sbjct: 53949 tctctccctatgttacatgt 53930
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 297      gttcaaatggattgcaaatc 316
                ||||||||||||||||||||
Sbjct: 16983702 gttcaaatggattgcaaatc 16983683
to top
>gb|AC108016.5| Homo sapiens BAC clone RP13-1015A13 from 4, complete sequence
          Length = 162715

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 423    gctattttcttaagagcttctaat 446
              ||||||||||| ||||||||||||
Sbjct: 152540 gctattttctttagagcttctaat 152563
to top
>gb|AE014133.1| Streptococcus mutans UA159, complete genome
          Length = 2030921

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 525    ttttttggtattgtaggccg 544
              ||||||||||||||||||||
Sbjct: 773361 ttttttggtattgtaggccg 773380
to top
>dbj|AP006048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1423D04
          Length = 154474

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    gttcaaatggattgcaaatc 316
              ||||||||||||||||||||
Sbjct: 116724 gttcaaatggattgcaaatc 116705
to top
>dbj|BS000035.1| Pan troglodytes chromosome 22 clone:PTB-089G12, map 22, complete
              sequences
          Length = 225055

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     taggcttcttatttcatgtg 48
              ||||||||||||||||||||
Sbjct: 146989 taggcttcttatttcatgtg 146970
to top
>dbj|AB010970.1| Streptococcus mutans rmlD, rgpAc, rgpBc, rgpCc, rgpDc, rgpEc, rgpFc
            and ORF7 genes, partial and complete cds
          Length = 11085

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 525  ttttttggtattgtaggccg 544
            ||||||||||||||||||||
Sbjct: 3831 ttttttggtattgtaggccg 3850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,189,134
Number of Sequences: 3902068
Number of extensions: 5189134
Number of successful extensions: 90236
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90112
Number of HSP's gapped (non-prelim): 124
length of query: 598
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 575
effective length of database: 17,143,297,704
effective search space: 9857396179800
effective search space used: 9857396179800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top