ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags12f11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 446 bits (225), Expect = e-122 Identities = 471/548 (85%), Gaps = 5/548 (0%) Strand = Plus / Plus Query: 9 tgggctggnacatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgag 68 |||||||| ||||||||||||||||| |||| |||||| ||||| |||||| | |||||| Sbjct: 1497620 tgggctgg-acatagtggactgcctcttggttcacaag-aatggccgcttcaccggcgag 1497677 Query: 69 gcctttgttgtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcag 128 || ||||| || ||||| || ||||||||||||||||||| |||||||||||| ||||| Sbjct: 1497678 gcttttgtcgtattcccatcagccatgcaagcagagtttgcactgcaccgcaaccggcag 1497737 Query: 129 aacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgca 188 ||||||||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| Sbjct: 1497738 aacatgggcaggaggtatgttgaggtgttcagatgcaagaagcaagagtactacagtgca 1497797 Query: 189 atagccgctgaggtgaaccagggtggtgctctcctcgagcctgagcaccggcactcctcg 248 ||||| ||||| ||||||||||| || || || |||| | ||| |||| |||||| | Sbjct: 1497798 atagctgctgaagtgaaccagggcgg--ct-tcttcgactcggagtaccgtcactcccca 1497854 Query: 249 cctcctctacggcccaggaggctgtctgaagacaagagcagcatggagtacactgaggtg 308 ||||||| |||||||| || | ||||||||||||||||||||||||| ||||||||| Sbjct: 1497855 cctcctccacggcccaagaaaccagctgaagacaagagcagcatggagtatactgaggtg 1497914 Query: 309 ctgaagctgcgtgggctcccttactccgccaccatagaggacatcatcaagttctttgtg 368 || ||||| ||||| || || ||||| || |||| || ||||||||||||||||||||| Sbjct: 1497915 ctcaagctccgtggcctgccctactctgctaccactgaagacatcatcaagttctttgtg 1497974 Query: 369 gagtacgagctgacggaggacaatgtgcacatcgcgtaccgctcggatgggaaggccact 428 ||||||||||||||||| || ||||||||||||| |||||| | ||||| ||||||||| Sbjct: 1497975 gagtacgagctgacggacgaaaatgtgcacatcgtgtaccgtccagatggtaaggccact 1498034 Query: 429 ggcgaggcctttgtggagttcccgacggccgaggttgcaaagactgccatgtgcaaggat 488 || || |||| ||||||||||||||| || ||||||| ||||| |||||||||||||| Sbjct: 1498035 ggagaagcctatgtggagttcccgacagcagaggttgtgaagacagccatgtgcaaggac 1498094 Query: 489 aagatgaccatcggtaccaggtacgtggagctgttcccctcgactcccgaggaggcgagc 548 ||||||||||| || || |||||||||||||||||||| || || || |||||||| ||| Sbjct: 1498095 aagatgaccattgggacaaggtacgtggagctgttcccatcaaccccagaggaggccagc 1498154 Query: 549 agggcgaa 556 |||||||| Sbjct: 1498155 agggcgaa 1498162
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 446 bits (225), Expect = e-122 Identities = 471/548 (85%), Gaps = 5/548 (0%) Strand = Plus / Plus Query: 9 tgggctggnacatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgag 68 |||||||| ||||||||||||||||| |||| |||||| ||||| |||||| | |||||| Sbjct: 1497620 tgggctgg-acatagtggactgcctcttggttcacaag-aatggccgcttcaccggcgag 1497677 Query: 69 gcctttgttgtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcag 128 || ||||| || ||||| || ||||||||||||||||||| |||||||||||| ||||| Sbjct: 1497678 gcttttgtcgtattcccatcagccatgcaagcagagtttgcactgcaccgcaaccggcag 1497737 Query: 129 aacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgca 188 ||||||||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| Sbjct: 1497738 aacatgggcaggaggtatgttgaggtgttcagatgcaagaagcaagagtactacagtgca 1497797 Query: 189 atagccgctgaggtgaaccagggtggtgctctcctcgagcctgagcaccggcactcctcg 248 ||||| ||||| ||||||||||| || || || |||| | ||| |||| |||||| | Sbjct: 1497798 atagctgctgaagtgaaccagggcgg--ct-tcttcgactcggagtaccgtcactcccca 1497854 Query: 249 cctcctctacggcccaggaggctgtctgaagacaagagcagcatggagtacactgaggtg 308 ||||||| |||||||| || | ||||||||||||||||||||||||| ||||||||| Sbjct: 1497855 cctcctccacggcccaagaaaccagctgaagacaagagcagcatggagtatactgaggtg 1497914 Query: 309 ctgaagctgcgtgggctcccttactccgccaccatagaggacatcatcaagttctttgtg 368 || ||||| ||||| || || ||||| || |||| || ||||||||||||||||||||| Sbjct: 1497915 ctcaagctccgtggcctgccctactctgctaccactgaagacatcatcaagttctttgtg 1497974 Query: 369 gagtacgagctgacggaggacaatgtgcacatcgcgtaccgctcggatgggaaggccact 428 ||||||||||||||||| || ||||||||||||| |||||| | ||||| ||||||||| Sbjct: 1497975 gagtacgagctgacggacgaaaatgtgcacatcgtgtaccgtccagatggtaaggccact 1498034 Query: 429 ggcgaggcctttgtggagttcccgacggccgaggttgcaaagactgccatgtgcaaggat 488 || || |||| ||||||||||||||| || ||||||| ||||| |||||||||||||| Sbjct: 1498035 ggagaagcctatgtggagttcccgacagcagaggttgtgaagacagccatgtgcaaggac 1498094 Query: 489 aagatgaccatcggtaccaggtacgtggagctgttcccctcgactcccgaggaggcgagc 548 ||||||||||| || || |||||||||||||||||||| || || || |||||||| ||| Sbjct: 1498095 aagatgaccattgggacaaggtacgtggagctgttcccatcaaccccagaggaggccagc 1498154 Query: 549 agggcgaa 556 |||||||| Sbjct: 1498155 agggcgaa 1498162
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183385 Score = 446 bits (225), Expect = e-122 Identities = 471/548 (85%), Gaps = 5/548 (0%) Strand = Plus / Minus Query: 9 tgggctggnacatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgag 68 |||||||| ||||||||||||||||| |||| |||||| ||||| |||||| | |||||| Sbjct: 128112 tgggctgg-acatagtggactgcctcttggttcacaag-aatggccgcttcaccggcgag 128055 Query: 69 gcctttgttgtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcag 128 || ||||| || ||||| || ||||||||||||||||||| |||||||||||| ||||| Sbjct: 128054 gcttttgtcgtattcccatcagccatgcaagcagagtttgcactgcaccgcaaccggcag 127995 Query: 129 aacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgca 188 ||||||||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| Sbjct: 127994 aacatgggcaggaggtatgttgaggtgttcagatgcaagaagcaagagtactacagtgca 127935 Query: 189 atagccgctgaggtgaaccagggtggtgctctcctcgagcctgagcaccggcactcctcg 248 ||||| ||||| ||||||||||| || || || |||| | ||| |||| |||||| | Sbjct: 127934 atagctgctgaagtgaaccagggcgg--ct-tcttcgactcggagtaccgtcactcccca 127878 Query: 249 cctcctctacggcccaggaggctgtctgaagacaagagcagcatggagtacactgaggtg 308 ||||||| |||||||| || | ||||||||||||||||||||||||| ||||||||| Sbjct: 127877 cctcctccacggcccaagaaaccagctgaagacaagagcagcatggagtatactgaggtg 127818 Query: 309 ctgaagctgcgtgggctcccttactccgccaccatagaggacatcatcaagttctttgtg 368 || ||||| ||||| || || ||||| || |||| || ||||||||||||||||||||| Sbjct: 127817 ctcaagctccgtggcctgccctactctgctaccactgaagacatcatcaagttctttgtg 127758 Query: 369 gagtacgagctgacggaggacaatgtgcacatcgcgtaccgctcggatgggaaggccact 428 ||||||||||||||||| || ||||||||||||| |||||| | ||||| ||||||||| Sbjct: 127757 gagtacgagctgacggacgaaaatgtgcacatcgtgtaccgtccagatggtaaggccact 127698 Query: 429 ggcgaggcctttgtggagttcccgacggccgaggttgcaaagactgccatgtgcaaggat 488 || || |||| ||||||||||||||| || ||||||| ||||| |||||||||||||| Sbjct: 127697 ggagaagcctatgtggagttcccgacagcagaggttgtgaagacagccatgtgcaaggac 127638 Query: 489 aagatgaccatcggtaccaggtacgtggagctgttcccctcgactcccgaggaggcgagc 548 ||||||||||| || || |||||||||||||||||||| || || || |||||||| ||| Sbjct: 127637 aagatgaccattgggacaaggtacgtggagctgttcccatcaaccccagaggaggccagc 127578 Query: 549 agggcgaa 556 |||||||| Sbjct: 127577 agggcgaa 127570
>gb|AY108120.1| Zea mays PCO106809 mRNA sequence Length = 1052 Score = 398 bits (201), Expect = e-108 Identities = 456/539 (84%), Gaps = 4/539 (0%) Strand = Plus / Plus Query: 18 acatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgaggcctttgtt 77 |||||||||||||||||||||| ||||| || ||||||||| | |||||||| ||||| Sbjct: 463 acatagtggactgcctcctggttaacaag-aacgggcgcttcaccggcgaggcttttgta 521 Query: 78 gtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcagaacatgggc 137 |||||||| | ||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 522 gtcttcccaacagccatgcaggcagagtttgcgctgcaccgcgacaggcagaacatgggg 581 Query: 138 aggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgcaatagccgct 197 ||||||| || ||||| ||||| ||||||||||| || |||||| | ||||||||| | Sbjct: 582 cggaggtatgtcgaggtgttcaggtgcaagaagcacgagtactactgtgcaatagccaat 641 Query: 198 gaggtgaaccagggtggtgctctcctcgagcctgagcaccggcactcctcgcctcctcta 257 |||||||||||||| ||| | || ||||| ||| |||| | |||| ||||||||| Sbjct: 642 gaggtgaaccagggcggttatttc---gagccggagtaccgccgctccccgcctcctccg 698 Query: 258 cggcccaggaggctgtctgaagacaagagcagcatggagtacactgaggtgctgaagctg 317 |||| |||| || ||||||||| ||| |||||||||||||||| ||||| |||||||| Sbjct: 699 aggcctaggaagccgtctgaagataagggcagcatggagtacacagaggttctgaagctc 758 Query: 318 cgtgggctcccttactccgccaccatagaggacatcatcaagttctttgtggagtacgag 377 || ||||| || ||||| ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 759 cgcgggcttccctactctgccaccactgaggacatcatcaagttcttcctggagtacgag 818 Query: 378 ctgacggaggacaatgtgcacatcgcgtaccgctcggatgggaaggccactggcgaggcc 437 ||| | ||||| || ||||| ||||| |||||||| |||||||||||||| || || ||| Sbjct: 819 ctggcagaggagaacgtgcatatcgcctaccgctccgatgggaaggccacgggtgaagcc 878 Query: 438 tttgtggagttcccgacggccgaggttgcaaagactgccatgtgcaaggataagatgacc 497 || || ||||| ||||| || || || || ||||| |||||||||||||||||||||||| Sbjct: 879 ttcgttgagtttccgacagctgaagtcgcgaagacggccatgtgcaaggataagatgacc 938 Query: 498 atcggtaccaggtacgtggagctgttcccctcgactcccgaggaggcgagcagggcgaa 556 || || || |||||||||||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 939 attgggacgaggtacgtggagctgttcccgtcgaccccagaggaggccagcagggcgaa 997
>gb|BT019015.1| Zea mays clone Contig510.F mRNA sequence Length = 1222 Score = 367 bits (185), Expect = 3e-98 Identities = 452/539 (83%), Gaps = 4/539 (0%) Strand = Plus / Plus Query: 18 acatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgaggcctttgtt 77 ||||||||||||||||||||||| ||||| || ||||||||| | |||||||| || || Sbjct: 467 acatagtggactgcctcctggtcaacaag-aacgggcgcttcaccggcgaggctttcgtg 525 Query: 78 gtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcagaacatgggc 137 |||||||| | ||||||| ||||||||||||||||| ||| |||||||||||||||| Sbjct: 526 gtcttcccaacagccatgcaggcagagtttgcgctgcatcgcgacaggcagaacatgggg 585 Query: 138 aggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgcaatagccgct 197 ||||||| || ||||| ||||| ||||||||||| || |||||| | ||||||||| | Sbjct: 586 cggaggtatgtcgaggtgttcaggtgcaagaagcacgagtactactgtgcaatagccaat 645 Query: 198 gaggtgaaccagggtggtgctctcctcgagcctgagcaccggcactcctcgcctcctcta 257 |||||||||||||| ||| | | ||||| ||| |||| | |||| ||||||||| Sbjct: 646 gaggtgaaccagggcggttatttt---gagccggagtaccgccgctccccgcctcctccg 702 Query: 258 cggcccaggaggctgtctgaagacaagagcagcatggagtacactgaggtgctgaagctg 317 |||| |||| || ||||||||| ||| |||||||||||||||| ||||| |||||||| Sbjct: 703 aggcctaggaagccgtctgaagataagggcagcatggagtacacagaggttctgaagctc 762 Query: 318 cgtgggctcccttactccgccaccatagaggacatcatcaagttctttgtggagtacgag 377 || ||||| || ||||| ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 763 cgcgggcttccctactctgccaccactgaggacatcatcaagttcttcctggagtacgag 822 Query: 378 ctgacggaggacaatgtgcacatcgcgtaccgctcggatgggaaggccactggcgaggcc 437 ||| | ||||| || ||||| ||||| |||||||| |||||||||||||| || || ||| Sbjct: 823 ctggcagaggagaacgtgcatatcgcctaccgctccgatgggaaggccacgggtgaagcc 882 Query: 438 tttgtggagttcccgacggccgaggttgcaaagactgccatgtgcaaggataagatgacc 497 || || ||||| ||||| || || || || ||||| ||||||||||||||||||||||| Sbjct: 883 ttcgttgagtttccgacagcggaagtcgcgaagacggccatgtgcaaggataagatgact 942 Query: 498 atcggtaccaggtacgtggagctgttcccctcgactcccgaggaggcgagcagggcgaa 556 || || || ||||||| |||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 943 attgggacgaggtacggggagctgttcccgtcgaccccagaggaggccagcagggcgaa 1001
>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019B24, complete sequence Length = 162385 Score = 299 bits (151), Expect = 6e-78 Identities = 250/283 (88%) Strand = Plus / Plus Query: 274 ctgaagacaagagcagcatggagtacactgaggtgctgaagctgcgtgggctcccttact 333 |||||||||||||||||||||| || ||||||||||| ||||| ||||| || || |||| Sbjct: 69403 ctgaagacaagagcagcatggaatatactgaggtgctcaagctccgtggcctgccctact 69462 Query: 334 ccgccaccatagaggacatcatcaagttctttgtggagtacgagctgacggaggacaatg 393 | || |||| || |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 69463 ctgctaccactgaagacatcatcaagttctttgtggagtatgagctgacggaggaaaatg 69522 Query: 394 tgcacatcgcgtaccgctcggatgggaaggccactggcgaggcctttgtggagttcccga 453 |||||||||||||||| | ||||| ||||||||||| || ||||||||||||||||| | Sbjct: 69523 tgcacatcgcgtaccgtccagatggtaaggccactggagaagcctttgtggagttcccaa 69582 Query: 454 cggccgaggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacg 513 | || |||||||||||||| |||||||||||||| ||||||||||| || || ||||||| Sbjct: 69583 cagcagaggttgcaaagacagccatgtgcaaggacaagatgaccattgggacaaggtacg 69642 Query: 514 tggagctgttcccctcgactcccgaggaggcgagcagggcgaa 556 ||||||||||||| || || || |||||||| ||||||||||| Sbjct: 69643 tggagctgttcccatcaaccccagaggaggccagcagggcgaa 69685 Score = 220 bits (111), Expect = 4e-54 Identities = 182/203 (89%), Gaps = 2/203 (0%) Strand = Plus / Plus Query: 9 tgggctggnacatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgag 68 |||||||| ||||||||||||||||| |||| |||||| ||||| |||||| | |||||| Sbjct: 69146 tgggctgg-acatagtggactgcctcttggttcacaag-aatggccgcttcaccggcgag 69203 Query: 69 gcctttgttgtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcag 128 || ||||| || ||||| || ||||||||||||||||||| |||||||||||| ||||| Sbjct: 69204 gcttttgtcgtattcccatcagccatgcaagcagagtttgcactgcaccgcaaccggcag 69263 Query: 129 aacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgca 188 ||||||||||||||||| || ||||| ||||||||||||||||| || |||||||||||| Sbjct: 69264 aacatgggcaggaggtatgttgaggtgttcagatgcaagaagcaagagtactacagcgca 69323 Query: 189 atagccgctgaggtgaaccaggg 211 ||||| ||||||||||||||||| Sbjct: 69324 atagctgctgaggtgaaccaggg 69346
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 299 bits (151), Expect = 6e-78 Identities = 250/283 (88%) Strand = Plus / Plus Query: 274 ctgaagacaagagcagcatggagtacactgaggtgctgaagctgcgtgggctcccttact 333 |||||||||||||||||||||| || ||||||||||| ||||| ||||| || || |||| Sbjct: 1554867 ctgaagacaagagcagcatggaatatactgaggtgctcaagctccgtggcctgccctact 1554926 Query: 334 ccgccaccatagaggacatcatcaagttctttgtggagtacgagctgacggaggacaatg 393 | || |||| || |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 1554927 ctgctaccactgaagacatcatcaagttctttgtggagtatgagctgacggaggaaaatg 1554986 Query: 394 tgcacatcgcgtaccgctcggatgggaaggccactggcgaggcctttgtggagttcccga 453 |||||||||||||||| | ||||| ||||||||||| || ||||||||||||||||| | Sbjct: 1554987 tgcacatcgcgtaccgtccagatggtaaggccactggagaagcctttgtggagttcccaa 1555046 Query: 454 cggccgaggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacg 513 | || |||||||||||||| |||||||||||||| ||||||||||| || || ||||||| Sbjct: 1555047 cagcagaggttgcaaagacagccatgtgcaaggacaagatgaccattgggacaaggtacg 1555106 Query: 514 tggagctgttcccctcgactcccgaggaggcgagcagggcgaa 556 ||||||||||||| || || || |||||||| ||||||||||| Sbjct: 1555107 tggagctgttcccatcaaccccagaggaggccagcagggcgaa 1555149 Score = 220 bits (111), Expect = 4e-54 Identities = 182/203 (89%), Gaps = 2/203 (0%) Strand = Plus / Plus Query: 9 tgggctggnacatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgag 68 |||||||| ||||||||||||||||| |||| |||||| ||||| |||||| | |||||| Sbjct: 1554610 tgggctgg-acatagtggactgcctcttggttcacaag-aatggccgcttcaccggcgag 1554667 Query: 69 gcctttgttgtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcag 128 || ||||| || ||||| || ||||||||||||||||||| |||||||||||| ||||| Sbjct: 1554668 gcttttgtcgtattcccatcagccatgcaagcagagtttgcactgcaccgcaaccggcag 1554727 Query: 129 aacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgca 188 ||||||||||||||||| || ||||| ||||||||||||||||| || |||||||||||| Sbjct: 1554728 aacatgggcaggaggtatgttgaggtgttcagatgcaagaagcaagagtactacagcgca 1554787 Query: 189 atagccgctgaggtgaaccaggg 211 ||||| ||||||||||||||||| Sbjct: 1554788 atagctgctgaggtgaaccaggg 1554810
>dbj|AK058340.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D07, full insert sequence Length = 1401 Score = 299 bits (151), Expect = 6e-78 Identities = 250/283 (88%) Strand = Plus / Plus Query: 274 ctgaagacaagagcagcatggagtacactgaggtgctgaagctgcgtgggctcccttact 333 |||||||||||||||||||||| || ||||||||||| ||||| ||||| || || |||| Sbjct: 910 ctgaagacaagagcagcatggaatatactgaggtgctcaagctccgtggcctgccctact 969 Query: 334 ccgccaccatagaggacatcatcaagttctttgtggagtacgagctgacggaggacaatg 393 | || |||| || |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 970 ctgctaccactgaagacatcatcaagttctttgtggagtatgagctgacggaggaaaatg 1029 Query: 394 tgcacatcgcgtaccgctcggatgggaaggccactggcgaggcctttgtggagttcccga 453 |||||||||||||||| | ||||| ||||||||||| || ||||||||||||||||| | Sbjct: 1030 tgcacatcgcgtaccgtccagatggtaaggccactggagaagcctttgtggagttcccaa 1089 Query: 454 cggccgaggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacg 513 | || |||||||||||||| |||||||||||||| ||||||||||| || || ||||||| Sbjct: 1090 cagcagaggttgcaaagacagccatgtgcaaggacaagatgaccattgggacaaggtacg 1149 Query: 514 tggagctgttcccctcgactcccgaggaggcgagcagggcgaa 556 ||||||||||||| || || || |||||||| ||||||||||| Sbjct: 1150 tggagctgttcccatcaaccccagaggaggccagcagggcgaa 1192 Score = 220 bits (111), Expect = 4e-54 Identities = 182/203 (89%), Gaps = 2/203 (0%) Strand = Plus / Plus Query: 9 tgggctggnacatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgag 68 |||||||| ||||||||||||||||| |||| |||||| ||||| |||||| | |||||| Sbjct: 653 tgggctgg-acatagtggactgcctcttggttcacaag-aatggccgcttcaccggcgag 710 Query: 69 gcctttgttgtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcag 128 || ||||| || ||||| || ||||||||||||||||||| |||||||||||| ||||| Sbjct: 711 gcttttgtcgtattcccatcagccatgcaagcagagtttgcactgcaccgcaaccggcag 770 Query: 129 aacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgca 188 ||||||||||||||||| || ||||| ||||||||||||||||| || |||||||||||| Sbjct: 771 aacatgggcaggaggtatgttgaggtgttcagatgcaagaagcaagagtactacagcgca 830 Query: 189 atagccgctgaggtgaaccaggg 211 ||||| ||||||||||||||||| Sbjct: 831 atagctgctgaggtgaaccaggg 853
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 299 bits (151), Expect = 6e-78 Identities = 250/283 (88%) Strand = Plus / Plus Query: 274 ctgaagacaagagcagcatggagtacactgaggtgctgaagctgcgtgggctcccttact 333 |||||||||||||||||||||| || ||||||||||| ||||| ||||| || || |||| Sbjct: 1552588 ctgaagacaagagcagcatggaatatactgaggtgctcaagctccgtggcctgccctact 1552647 Query: 334 ccgccaccatagaggacatcatcaagttctttgtggagtacgagctgacggaggacaatg 393 | || |||| || |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 1552648 ctgctaccactgaagacatcatcaagttctttgtggagtatgagctgacggaggaaaatg 1552707 Query: 394 tgcacatcgcgtaccgctcggatgggaaggccactggcgaggcctttgtggagttcccga 453 |||||||||||||||| | ||||| ||||||||||| || ||||||||||||||||| | Sbjct: 1552708 tgcacatcgcgtaccgtccagatggtaaggccactggagaagcctttgtggagttcccaa 1552767 Query: 454 cggccgaggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacg 513 | || |||||||||||||| |||||||||||||| ||||||||||| || || ||||||| Sbjct: 1552768 cagcagaggttgcaaagacagccatgtgcaaggacaagatgaccattgggacaaggtacg 1552827 Query: 514 tggagctgttcccctcgactcccgaggaggcgagcagggcgaa 556 ||||||||||||| || || || |||||||| ||||||||||| Sbjct: 1552828 tggagctgttcccatcaaccccagaggaggccagcagggcgaa 1552870 Score = 220 bits (111), Expect = 4e-54 Identities = 182/203 (89%), Gaps = 2/203 (0%) Strand = Plus / Plus Query: 9 tgggctggnacatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgag 68 |||||||| ||||||||||||||||| |||| |||||| ||||| |||||| | |||||| Sbjct: 1552331 tgggctgg-acatagtggactgcctcttggttcacaag-aatggccgcttcaccggcgag 1552388 Query: 69 gcctttgttgtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcag 128 || ||||| || ||||| || ||||||||||||||||||| |||||||||||| ||||| Sbjct: 1552389 gcttttgtcgtattcccatcagccatgcaagcagagtttgcactgcaccgcaaccggcag 1552448 Query: 129 aacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgca 188 ||||||||||||||||| || ||||| ||||||||||||||||| || |||||||||||| Sbjct: 1552449 aacatgggcaggaggtatgttgaggtgttcagatgcaagaagcaagagtactacagcgca 1552508 Query: 189 atagccgctgaggtgaaccaggg 211 ||||| ||||||||||||||||| Sbjct: 1552509 atagctgctgaggtgaaccaggg 1552531
>gb|AY105685.1| Zea mays PCO106810 mRNA sequence Length = 1270 Score = 242 bits (122), Expect = 1e-60 Identities = 242/282 (85%) Strand = Plus / Plus Query: 274 ctgaagacaagagcagcatggagtacactgaggtgctgaagctgcgtgggctcccttact 333 ||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct: 734 ctgaagacaagggcagcatggagtacactgaggtgctgaagctccgtgggcttccctact 793 Query: 334 ccgccaccatagaggacatcatcaagttctttgtggagtacgagctgacggaggacaatg 393 | || || | |||||||||||||||||||| ||||||| |||||||| ||||| |||| Sbjct: 794 ctgcgacgactgaggacatcatcaagttcttcctggagtatgagctgacagaggagaatg 853 Query: 394 tgcacatcgcgtaccgctcggatgggaaggccactggcgaggcctttgtggagttcccga 453 |||| || ||| |||||| |||||||| || || || || |||||||| |||||||| | Sbjct: 854 tgcatattgcgatccgctcagatgggaaagctaccggtgaagcctttgttgagttcccaa 913 Query: 454 cggccgaggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacg 513 | || || ||||| ||||| || |||||||||||||||||||| ||||| || ||||| | Sbjct: 914 cagctgaagttgccaagacggcgatgtgcaaggataagatgactatcgggacgaggtatg 973 Query: 514 tggagctgttcccctcgactcccgaggaggcgagcagggcga 555 ||||||||||||| || || || ||||||||||||||||||| Sbjct: 974 tggagctgttcccgtctaccccagaggaggcgagcagggcga 1015 Score = 155 bits (78), Expect = 2e-34 Identities = 169/198 (85%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 18 acatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgaggcctttgtt 77 |||||||||||||||||||||| ||||| ||||| |||||| |||| ||||| ||||| Sbjct: 479 acatagtggactgcctcctggttaacaag-aatggccgcttcactggtgaggcttttgtg 537 Query: 78 gtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcagaacatgggc 137 |||||||| | | |||||| |||| ||||| ||||| || |||||||||||||||||| Sbjct: 538 gtcttcccaacagctatgcaaacagaatttgctctgcatcgtaacaggcagaacatgggc 597 Query: 138 aggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgcaatagccgct 197 ||||||| || ||||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 598 cggaggtatgttgaggtgttcagatgtaagaagcaggagtactacagtgcaatagccaac 657 Query: 198 gaggtgaaccagggtggt 215 ||||||| |||||||||| Sbjct: 658 gaggtgagccagggtggt 675
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 167 bits (84), Expect = 6e-38 Identities = 173/200 (86%), Gaps = 2/200 (1%) Strand = Plus / Plus Query: 9 tgggctggnacatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgag 68 |||||||| ||||||||||||||||| |||| |||||| ||||| ||||| | | |||| Sbjct: 35837929 tgggctgg-acatagtggactgcctcttggttcacaag-aatggctgcttcaccgacgag 35837986 Query: 69 gcctttgttgtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcag 128 || ||||| |||||||| || ||||||||| ||||||||| |||||||||||| || || Sbjct: 35837987 gcttttgtcgtcttcccatcagccatgcaaggagagtttgcactgcaccgcaaccggtag 35838046 Query: 129 aacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgca 188 ||||||||||||||||| || ||||| || |||||||||||||| || || |||||| || Sbjct: 35838047 aacatgggcaggaggtatgttgaggtgtttagatgcaagaagcaagagtattacagctca 35838106 Query: 189 atagccgctgaggtgaacca 208 ||||| |||||||||||||| Sbjct: 35838107 atagctgctgaggtgaacca 35838126 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 348 gacatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtac 407 |||||||||||||||||||| ||||| ||| |||||||||| |||||||||| ||||||| Sbjct: 35838502 gacatcatcaagttctttgtagagtatgagttgacggaggaaaatgtgcacaccgcgtac 35838561 Query: 408 cg 409 || Sbjct: 35838562 cg 35838563 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 461 ggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagct 520 |||||| ||||| ||||| |||||||| ||||||||||| || || |||||| ||||||| Sbjct: 35838604 ggttgcgaagacagccatatgcaaggacaagatgaccattgggacaaggtacatggagct 35838663 Query: 521 gttcccctcgactcccgaggaggcgagcagg 551 |||||| || || || |||||||| |||||| Sbjct: 35838664 gttcccatcaaccccagaggaggccagcagg 35838694
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1282_E10 Length = 107284 Score = 167 bits (84), Expect = 6e-38 Identities = 173/200 (86%), Gaps = 2/200 (1%) Strand = Plus / Plus Query: 9 tgggctggnacatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgag 68 |||||||| ||||||||||||||||| |||| |||||| ||||| ||||| | | |||| Sbjct: 28475 tgggctgg-acatagtggactgcctcttggttcacaag-aatggctgcttcaccgacgag 28532 Query: 69 gcctttgttgtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcag 128 || ||||| |||||||| || ||||||||| ||||||||| |||||||||||| || || Sbjct: 28533 gcttttgtcgtcttcccatcagccatgcaaggagagtttgcactgcaccgcaaccggtag 28592 Query: 129 aacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgca 188 ||||||||||||||||| || ||||| || |||||||||||||| || || |||||| || Sbjct: 28593 aacatgggcaggaggtatgttgaggtgtttagatgcaagaagcaagagtattacagctca 28652 Query: 189 atagccgctgaggtgaacca 208 ||||| |||||||||||||| Sbjct: 28653 atagctgctgaggtgaacca 28672 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 348 gacatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtac 407 |||||||||||||||||||| ||||| ||| |||||||||| |||||||||| ||||||| Sbjct: 29048 gacatcatcaagttctttgtagagtatgagttgacggaggaaaatgtgcacaccgcgtac 29107 Query: 408 cg 409 || Sbjct: 29108 cg 29109 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 461 ggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagct 520 |||||| ||||| ||||| |||||||| ||||||||||| || || |||||| ||||||| Sbjct: 29150 ggttgcgaagacagccatatgcaaggacaagatgaccattgggacaaggtacatggagct 29209 Query: 521 gttcccctcgactcccgaggaggcgagcagg 551 |||||| || || || |||||||| |||||| Sbjct: 29210 gttcccatcaaccccagaggaggccagcagg 29240
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1149_C12 Length = 120743 Score = 167 bits (84), Expect = 6e-38 Identities = 173/200 (86%), Gaps = 2/200 (1%) Strand = Plus / Plus Query: 9 tgggctggnacatagtggactgcctcctggtccacaagnaatgggcgcttctctggcgag 68 |||||||| ||||||||||||||||| |||| |||||| ||||| ||||| | | |||| Sbjct: 108644 tgggctgg-acatagtggactgcctcttggttcacaag-aatggctgcttcaccgacgag 108701 Query: 69 gcctttgttgtcttcccttcgtccatgcaagcagagtttgcgctgcaccgcaacaggcag 128 || ||||| |||||||| || ||||||||| ||||||||| |||||||||||| || || Sbjct: 108702 gcttttgtcgtcttcccatcagccatgcaaggagagtttgcactgcaccgcaaccggtag 108761 Query: 129 aacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatactacagcgca 188 ||||||||||||||||| || ||||| || |||||||||||||| || || |||||| || Sbjct: 108762 aacatgggcaggaggtatgttgaggtgtttagatgcaagaagcaagagtattacagctca 108821 Query: 189 atagccgctgaggtgaacca 208 ||||| |||||||||||||| Sbjct: 108822 atagctgctgaggtgaacca 108841 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 348 gacatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtac 407 |||||||||||||||||||| ||||| ||| |||||||||| |||||||||| ||||||| Sbjct: 109217 gacatcatcaagttctttgtagagtatgagttgacggaggaaaatgtgcacaccgcgtac 109276 Query: 408 cg 409 || Sbjct: 109277 cg 109278 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 461 ggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagct 520 |||||| ||||| ||||| |||||||| ||||||||||| || || |||||| ||||||| Sbjct: 109319 ggttgcgaagacagccatatgcaaggacaagatgaccattgggacaaggtacatggagct 109378 Query: 521 gttcccctcgactcccgaggaggcgagcagg 551 |||||| || || || |||||||| |||||| Sbjct: 109379 gttcccatcaaccccagaggaggccagcagg 109409
>emb|CT009558.5| M.truncatula DNA sequence from clone MTH2-72I11 on chromosome 3, complete sequence Length = 145085 Score = 48.1 bits (24), Expect = 0.035 Identities = 54/64 (84%) Strand = Plus / Plus Query: 120 aacaggcagaacatgggcaggaggtacgtggaggttttcagatgcaagaagcaggaatac 179 |||||||||||||| || || || || || || ||||||||| | |||| |||||||||| Sbjct: 125682 aacaggcagaacataggtagaagatatgttgaagttttcagaagtaagaggcaggaatac 125741 Query: 180 taca 183 |||| Sbjct: 125742 taca 125745
>gb|DQ284474.1| Solanum tuberosum clone 131C10 unknown mRNA Length = 1429 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 150 gaggttttcagatgcaagaagcaggaatacta 181 |||||||||||| |||||||| |||||||||| Sbjct: 489 gaggttttcagaagcaagaaggaggaatacta 520
>ref|NM_125998.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G66010 mRNA, complete cds Length = 1116 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 414 gatgggaaggccactggcgaggcctttgtggagtt 448 |||||||||||||| || ||||| ||||||||||| Sbjct: 709 gatgggaaggccacgggagaggcatttgtggagtt 743
>gb|AC092313.2| Homo sapiens chromosome 19 clone LLNLR-293G8, complete sequence Length = 38582 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 120 aacaggcagaacatgggcaggag 142 ||||||||||||||||||||||| Sbjct: 12312 aacaggcagaacatgggcaggag 12290
>gb|AC092314.2| Homo sapiens chromosome 19 clone LLNLR-305H12, complete sequence Length = 44426 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 120 aacaggcagaacatgggcaggag 142 ||||||||||||||||||||||| Sbjct: 41509 aacaggcagaacatgggcaggag 41487
>emb|BX833141.1|CNS09Z0Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL36ZA08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 832 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 414 gatgggaaggccactggcgaggcctttgtggagtt 448 |||||||||||||| || ||||| ||||||||||| Sbjct: 557 gatgggaaggccacgggagaggcatttgtggagtt 591 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 294 gagtacactgaggtgctgaagctgcgtgggctcccttactc 334 |||||||| ||||| ||||| |||| |||||||||||||| Sbjct: 437 gagtacacagaggttttgaagatgcgagggctcccttactc 477
>dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A18 Length = 79899 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 414 gatgggaaggccactggcgaggcctttgtggagtt 448 |||||||||||||| || ||||| ||||||||||| Sbjct: 17072 gatgggaaggccacgggagaggcatttgtggagtt 17106
>emb|AL137164.3|CNS01DWF Human chromosome 14 DNA sequence BAC R-893D14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175368 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 467 aaagactgccatgtgcaaggataagat 493 ||||||||||||||||||||| ||||| Sbjct: 89714 aaagactgccatgtgcaaggagaagat 89740
>gb|AC008734.7| Homo sapiens chromosome 19 clone CTD-2529P6, complete sequence Length = 183137 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 120 aacaggcagaacatgggcaggag 142 ||||||||||||||||||||||| Sbjct: 36126 aacaggcagaacatgggcaggag 36104
>ref|XM_323555.1| Neurospora crassa OR74A hypothetical protein (NCU04216.1) partial mRNA Length = 1641 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 112 tgcaccgcaacaggcagaacatgggc 137 ||||||||| |||||||||||||||| Sbjct: 836 tgcaccgcagcaggcagaacatgggc 861
>ref|XM_955747.1| Neurospora crassa OR74A hypothetical protein (NCU04216.1) partial mRNA Length = 1641 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 112 tgcaccgcaacaggcagaacatgggc 137 ||||||||| |||||||||||||||| Sbjct: 836 tgcaccgcagcaggcagaacatgggc 861
>emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cosmid contig 62D11 Length = 102165 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 112 tgcaccgcaacaggcagaacatgggc 137 ||||||||| |||||||||||||||| Sbjct: 63269 tgcaccgcagcaggcagaacatgggc 63244
>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence Length = 220443 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 586 ccacaagatgctgaaccctggg 607 |||||||||||||||||||||| Sbjct: 175033 ccacaagatgctgaaccctggg 175012
>ref|XM_785745.1| PREDICTED: Strongylocentrotus purpuratus similar to alanine aminotransferase 2 (LOC585940), mRNA Length = 1125 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 catagaggacatcatcaagtt 361 ||||||||||||||||||||| Sbjct: 435 catagaggacatcatcaagtt 455
>ref|XM_381865.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01689.1) partial mRNA Length = 393 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 ctggcgaggcctttgtggagttcc 450 |||||||||||||||||| ||||| Sbjct: 132 ctggcgaggcctttgtggggttcc 109
>gb|AF530057.1| Turnip mosaic virus strain L polyprotein precursor, gene, partial cds Length = 1317 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tacgagctgacggaggacaa 391 |||||||||||||||||||| Sbjct: 604 tacgagctgacggaggacaa 623
>emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 2/7 Length = 349061 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 tgcaaagactgccatgtgca 483 |||||||||||||||||||| Sbjct: 138216 tgcaaagactgccatgtgca 138235
>gb|AC117834.6| Homo sapiens chromosome 8, clone CTD-3239E11, complete sequence Length = 189536 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 agaagcaggaatactacagc 185 |||||||||||||||||||| Sbjct: 33441 agaagcaggaatactacagc 33422
>gb|AC099785.2| Homo sapiens chromosome 1 clone RP11-435I3, complete sequence Length = 186160 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 atcatcaagttctttgtgga 370 |||||||||||||||||||| Sbjct: 183727 atcatcaagttctttgtgga 183708
>gb|AC118471.2| Homo sapiens chromosome 1 clone RP11-377O11, complete sequence Length = 59063 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 atcatcaagttctttgtgga 370 |||||||||||||||||||| Sbjct: 58503 atcatcaagttctttgtgga 58522
>gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, complete sequence Length = 167984 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 agaagcaggaatactacagc 185 |||||||||||||||||||| Sbjct: 15632 agaagcaggaatactacagc 15651
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 tgcaaagactgccatgtgca 483 |||||||||||||||||||| Sbjct: 2050319 tgcaaagactgccatgtgca 2050300
>emb|BX929486.1| Gallus gallus finished cDNA, clone ChEST183m18 Length = 1387 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gcaacaggcagaacatgggc 137 |||||||||||||||||||| Sbjct: 982 gcaacaggcagaacatgggc 1001
>gb|AF539411.1| Turnip mosaic virus TuMV-SD5 coat protein (CP) mRNA, partial cds Length = 867 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tacgagctgacggaggacaa 391 |||||||||||||||||||| Sbjct: 364 tacgagctgacggaggacaa 383
>gb|AC162806.4| Mus musculus BAC clone RP23-95E13 from chromosome 9, complete sequence Length = 165949 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgaggtgaaccagggtggtg 216 |||||||||||||||||||| Sbjct: 104602 tgaggtgaaccagggtggtg 104621
>dbj|AB180023.1| Turnip mosaic virus gene for polyprotein, partial cds Length = 1076 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tacgagctgacggaggacaa 391 |||||||||||||||||||| Sbjct: 364 tacgagctgacggaggacaa 383
>dbj|AB180021.1| Turnip mosaic virus gene for polyprotein, partial cds Length = 1076 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tacgagctgacggaggacaa 391 |||||||||||||||||||| Sbjct: 364 tacgagctgacggaggacaa 383
>dbj|AB180016.1| Turnip mosaic virus gene for polyprotein, partial cds Length = 1076 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tacgagctgacggaggacaa 391 |||||||||||||||||||| Sbjct: 364 tacgagctgacggaggacaa 383
>emb|AJ297629.2|TMO297629 Turnip mosaic virus genomic RNA for partial NIb replicase and coat protein, isolate Wenzhou Length = 1709 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tacgagctgacggaggacaa 391 |||||||||||||||||||| Sbjct: 997 tacgagctgacggaggacaa 1016
>gb|AC163696.3| Ornithorhynchus anatinus BAC clone OABb-153I22 from chromosome unknown, complete sequence Length = 139018 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 aggcagaacatgggcaggaggtac 146 |||||||||||||||| ||||||| Sbjct: 108626 aggcagaacatgggcaagaggtac 108649
>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177792 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 280 acaagagcagcatggagtacactg 303 ||||||||||||||||||| |||| Sbjct: 129301 acaagagcagcatggagtaaactg 129278
>emb|AL591478.19| Mouse DNA sequence from clone RP23-140D14 on chromosome 2, complete sequence Length = 236979 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ggtgaaccagggtggtgctc 219 |||||||||||||||||||| Sbjct: 118779 ggtgaaccagggtggtgctc 118798
>dbj|AB076553.1| Turnip mosaic virus CP gene for polyprotein, partial cds, isolate:HJ1S Length = 864 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tacgagctgacggaggacaa 391 |||||||||||||||||||| Sbjct: 364 tacgagctgacggaggacaa 383 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,408,650 Number of Sequences: 3902068 Number of extensions: 4408650 Number of successful extensions: 75630 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75417 Number of HSP's gapped (non-prelim): 200 length of query: 629 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 606 effective length of database: 17,143,297,704 effective search space: 10388838408624 effective search space used: 10388838408624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
