>ref|XM_467920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 675

 Score =  111 bits (56), Expect = 3e-21
 Identities = 116/136 (85%)
 Strand = Plus / Minus

                                                                       
Query: 461 tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 520
           ||||||||||||||||| ||||||||| || |  || || ||||||||||| ||||||||
Sbjct: 372 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 313

                                                                       
Query: 521 gtcaggcgatgctacagccaccacaaccccattgtcgttgatcgtctcgacggcatcagc 580
            ||||| ||||| || || ||||| || || |||||||| || || ||||| ||||||||
Sbjct: 312 ctcaggtgatgcaacggcaaccacgacaccgttgtcgttaattgtttcgacagcatcagc 253

                           
Query: 581 aaactccttgaaatcc 596
           ||||||||||||||||
Sbjct: 252 aaactccttgaaatcc 237

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 3e-21
 Identities = 116/136 (85%)
 Strand = Plus / Minus

                                                                            
Query: 461      tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 520
                ||||||||||||||||| ||||||||| || |  || || ||||||||||| ||||||||
Sbjct: 32087614 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 32087555

                                                                            
Query: 521      gtcaggcgatgctacagccaccacaaccccattgtcgttgatcgtctcgacggcatcagc 580
                 ||||| ||||| || || ||||| || || |||||||| || || ||||| ||||||||
Sbjct: 32087554 ctcaggtgatgcaacggcaaccacgacaccgttgtcgttaattgtttcgacagcatcagc 32087495

                                
Query: 581      aaactccttgaaatcc 596
                ||||||||||||||||
Sbjct: 32087494 aaactccttgaaatcc 32087479

>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0486G03
          Length = 146713

 Score =  111 bits (56), Expect = 3e-21
 Identities = 116/136 (85%)
 Strand = Plus / Minus

                                                                         
Query: 461   tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 520
             ||||||||||||||||| ||||||||| || |  || || ||||||||||| ||||||||
Sbjct: 24270 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 24211

                                                                         
Query: 521   gtcaggcgatgctacagccaccacaaccccattgtcgttgatcgtctcgacggcatcagc 580
              ||||| ||||| || || ||||| || || |||||||| || || ||||| ||||||||
Sbjct: 24210 ctcaggtgatgcaacggcaaccacgacaccgttgtcgttaattgtttcgacagcatcagc 24151

                             
Query: 581   aaactccttgaaatcc 596
             ||||||||||||||||
Sbjct: 24150 aaactccttgaaatcc 24135

>dbj|AK060417.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F01, full
           insert sequence
          Length = 675

 Score =  111 bits (56), Expect = 3e-21
 Identities = 116/136 (85%)
 Strand = Plus / Minus

                                                                       
Query: 461 tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 520
           ||||||||||||||||| ||||||||| || |  || || ||||||||||| ||||||||
Sbjct: 372 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 313

                                                                       
Query: 521 gtcaggcgatgctacagccaccacaaccccattgtcgttgatcgtctcgacggcatcagc 580
            ||||| ||||| || || ||||| || || |||||||| || || ||||| ||||||||
Sbjct: 312 ctcaggtgatgcaacggcaaccacgacaccgttgtcgttaattgtttcgacagcatcagc 253

                           
Query: 581 aaactccttgaaatcc 596
           ||||||||||||||||
Sbjct: 252 aaactccttgaaatcc 237

>gb|AY105969.1| Zea mays PCO131995 mRNA sequence
          Length = 1779

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 540  accacaaccccattgtcgttgatcgtctcgacggcatcagcaaactccttgaaatcc 596
            ||||| ||||||||||| ||||| || || || |||||||| |||||||||||||||
Sbjct: 1657 accacgaccccattgtccttgatggtttcaacagcatcagcgaactccttgaaatcc 1601

>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains the 5'
              end of the PAX2 gene for paired box gene 2 and fifteen CpG
              islands, complete sequence
          Length = 187101

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 353    tacagcgccagaccattcttctt 375
              |||||||||||||||||||||||
Sbjct: 139014 tacagcgccagaccattcttctt 138992

>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 155   acagcagcttggcgtacaaccgtctt 180
             ||||||||||||| ||||||||||||
Sbjct: 13338 acagcagcttggcttacaaccgtctt 13313

>gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, complete sequence
          Length = 196085

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 96     caagttacagaatattcaacta 117
              ||||||||||||||||||||||
Sbjct: 126156 caagttacagaatattcaacta 126177

>gb|AC115834.8| Mus musculus chromosome 3, clone RP24-159L1, complete sequence
          Length = 175998

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 493    acttctctttgtttgctgcct 513
              |||||||||||||||||||||
Sbjct: 101268 acttctctttgtttgctgcct 101248

>emb|Z81036.1|CEC16C2 Caenorhabditis elegans Cosmid C16C2, complete sequence
          Length = 21917

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 470   cttcttgatgtctgaaaataa 490
             |||||||||||||||||||||
Sbjct: 15091 cttcttgatgtctgaaaataa 15111

>ref|XM_763279.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_15_12905_13390) partial mRNA
          Length = 486

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 122 ttgagcaggttctcatcagct 142
           |||||||||||||||||||||
Sbjct: 443 ttgagcaggttctcatcagct 423

>ref|XM_763280.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_15_13494_12943) partial mRNA
          Length = 552

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 122 ttgagcaggttctcatcagct 142
           |||||||||||||||||||||
Sbjct: 148 ttgagcaggttctcatcagct 168

>emb|Z99119.2|BSUB0016 Bacillus subtilis complete genome (section 16 of 21): from 3013458 to
            3213379
          Length = 199922

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 478  tgtctgaaaataacgacttct 498
            |||||||||||||||||||||
Sbjct: 2059 tgtctgaaaataacgacttct 2039

>emb|X92428.1|ZMHOX1BGN Z.mays mRNA for Hox1b protein
          Length = 2790

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 360  ccagaccattcttcttcatca 380
            |||||||||||||||||||||
Sbjct: 1632 ccagaccattcttcttcatca 1612

>emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chromosome 11 Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 103582

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 383   gaagcaaaactctgaagaacc 403
             |||||||||||||||||||||
Sbjct: 23966 gaagcaaaactctgaagaacc 23986

>gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.388_F_14, complete sequence
          Length = 149030

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 260   taattatttcccctaaaaatg 280
             |||||||||||||||||||||
Sbjct: 90915 taattatttcccctaaaaatg 90895

>gb|L17320.1|BACACKA Bacillus subtilis acetate kinase (ackA) gene, complete cds
          Length = 1951

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 478 tgtctgaaaataacgacttct 498
           |||||||||||||||||||||
Sbjct: 519 tgtctgaaaataacgacttct 539

>gb|AF008220.1|AF008220 Bacillus subtilis rrnB-dnaB genomic region
          Length = 220060

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 478    tgtctgaaaataacgacttct 498
              |||||||||||||||||||||
Sbjct: 162648 tgtctgaaaataacgacttct 162668

>ref|NM_152884.2| Danio rerio caspase b (caspb), mRNA
          Length = 1812

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 aagcaaaactctgaagaacc 403
           ||||||||||||||||||||
Sbjct: 329 aagcaaaactctgaagaacc 348

>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 151    cctaacagcagcttggcgtacaac 174
              ||||||||| ||||||||||||||
Sbjct: 609609 cctaacagctgcttggcgtacaac 609632

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 554     gtcgttgatcgtctcgacggcatcagcaaact 585
               |||||| || ||||||||| ||||||||||||
Sbjct: 3791993 gtcgttcattgtctcgacgccatcagcaaact 3791962

>gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence
          Length = 129285

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tgagcactgattgcagaggg 203
             ||||||||||||||||||||
Sbjct: 58108 tgagcactgattgcagaggg 58127

>emb|AL078612.8|HSDJ65P5 Human DNA sequence from clone RP1-65P5 on chromosome 11p13 Contains the
             RCN1 gene for EF-hand calcium binding domain protein
             reticulocalbin 1, a seudogene similar to part of EIF4A
             (Eukaryotic Initiation Factor 4A), ESTs, STSs, GSSs and a
             putative CpG island, complete sequence
          Length = 94497

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   cacttcttgatgtctgaaaa 487
             ||||||||||||||||||||
Sbjct: 46257 cacttcttgatgtctgaaaa 46276

>emb|AL021069.1|HS970D1 Human DNA sequence from clone RP5-970D1 on chromosome 1q24 Contains the
             3' end of a variant of the gene for expressed in
             hematopoietic cells (heart, liver) (HLL), complete
             sequence
          Length = 100496

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   aactaattatttcccctaaa 276
             ||||||||||||||||||||
Sbjct: 64950 aactaattatttcccctaaa 64969

>emb|BX469930.13| Zebrafish DNA sequence from clone CH211-114L13 in linkage group 1,
             complete sequence
          Length = 183380

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   aagcaaaactctgaagaacc 403
             ||||||||||||||||||||
Sbjct: 49785 aagcaaaactctgaagaacc 49804

>gb|DQ022755.1| Danio rerio caspase b (caspb) mRNA, complete cds
          Length = 1215

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 aagcaaaactctgaagaacc 403
           ||||||||||||||||||||
Sbjct: 292 aagcaaaactctgaagaacc 311

>gb|BC095000.1| Danio rerio caspase b, mRNA (cDNA clone MGC:109807 IMAGE:7255283),
           complete cds
          Length = 1812

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 aagcaaaactctgaagaacc 403
           ||||||||||||||||||||
Sbjct: 329 aagcaaaactctgaagaacc 348

>gb|AF327410.1|AF327410 Danio rerio Caspy2 (caspy2) mRNA, complete cds
          Length = 1215

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 aagcaaaactctgaagaacc 403
           ||||||||||||||||||||
Sbjct: 292 aagcaaaactctgaagaacc 311

>gb|AC087231.1|AC087231 Caenorhabditis briggsae cosmid CB034P13, complete sequence
          Length = 71462

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    ttgcgaaaacatttatatctttcc 89
             |||||||||||||||| |||||||
Sbjct: 68882 ttgcgaaaacatttatttctttcc 68859

>emb|Z34802.1|CEM88 Caenorhabditis elegans Cosmid M88, complete sequence
          Length = 32723

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 471  ttcttgatgtctgaaaataa 490
            ||||||||||||||||||||
Sbjct: 8409 ttcttgatgtctgaaaataa 8428


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,580,245
Number of Sequences: 3902068
Number of extensions: 5580245
Number of successful extensions: 109922
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109802
Number of HSP's gapped (non-prelim): 120
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)