ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags12f02 |
|---|---|
| Clone Library Name | barley_pub |
>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 34) Length = 275 Score = 202 bits (513), Expect = 8e-52 Identities = 101/149 (67%), Positives = 118/149 (79%), Gaps = 2/149 (1%) Frame = +2 Query: 2 LVNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYY 181 +VN SGV+GT +A G V+FDT +GDFTK NAG+S TN DL ASL LNNKG+ L ASYY Sbjct: 127 IVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYY 186 Query: 182 HQVQ--LTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRP 355 H V +TAVGAE+ HSFS+NEN ITVGTQH LDPLT++K R NNFG ASAL+QH WRP Sbjct: 187 HTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRP 246 Query: 356 KSVITFSTEVDTKAVEKSPKFGLALSLKP 442 KS+ T S EVDTK+V+K KFGLAL+LKP Sbjct: 247 KSLFTVSGEVDTKSVDKGAKFGLALALKP 275
>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 273 Score = 196 bits (497), Expect = 5e-50 Identities = 98/148 (66%), Positives = 119/148 (80%), Gaps = 1/148 (0%) Frame = +2 Query: 2 LVNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYY 181 +VN+S V GTKALA G V+ DTA+G+ TKYNAG+S +N DL ASL LNNKG++L ASYY Sbjct: 126 VVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYY 185 Query: 182 HQVQLT-TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPK 358 H V + TAVGAE+ HSFSSNEN++T GTQH LDPLT +K R+NN G ASAL+QH WRPK Sbjct: 186 HIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPK 245 Query: 359 SVITFSTEVDTKAVEKSPKFGLALSLKP 442 SV T S EVDTKA++KS K G+A++LKP Sbjct: 246 SVWTISAEVDTKAIDKSSKVGIAVALKP 273
>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 36) Length = 275 Score = 194 bits (493), Expect = 2e-49 Identities = 96/149 (64%), Positives = 120/149 (80%), Gaps = 2/149 (1%) Frame = +2 Query: 2 LVNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYY 181 LVN SGV G +A G ++FDTA+G+FTK NAG+S ++ DL ASL LN+KG+T++ASYY Sbjct: 127 LVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYY 186 Query: 182 HQVQ--LTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRP 355 H V+ TAVGAE+ HSFSSNENT+T+GTQH LDPLTT+K R N++G ASALIQH WRP Sbjct: 187 HTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRP 246 Query: 356 KSVITFSTEVDTKAVEKSPKFGLALSLKP 442 KS+ T S EVDT+A+EKS K GLA++LKP Sbjct: 247 KSLFTISGEVDTRAIEKSAKIGLAVALKP 275
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 189 bits (480), Expect = 5e-48 Identities = 96/148 (64%), Positives = 117/148 (79%), Gaps = 1/148 (0%) Frame = +2 Query: 2 LVNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYY 181 +VN+SG GT ALA G V+ DTA+ +F KYNA +S+TNQDL ASL LNNKG++L ASYY Sbjct: 128 VVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYY 187 Query: 182 HQVQLT-TAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPK 358 H V+ + TAVGAE+ HSFSSNEN++T GTQH LDPLT +K R NN G ASALIQH + PK Sbjct: 188 HIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPK 247 Query: 359 SVITFSTEVDTKAVEKSPKFGLALSLKP 442 S+ T S EVDTKA+EKS K G+A++LKP Sbjct: 248 SLCTISAEVDTKAIEKSSKVGIAIALKP 275
>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 277 Score = 186 bits (471), Expect = 6e-47 Identities = 92/148 (62%), Positives = 117/148 (79%), Gaps = 2/148 (1%) Frame = +2 Query: 2 LVNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYY 181 +VN+SG G+KAL+ G+ V+FDTA+ DFTKYNA +S T+ DL ASL LNN G+TL ASYY Sbjct: 129 MVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYY 188 Query: 182 HQVQ--LTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRP 355 H V+ TAVGAE++HS S NE+T+ G+QH LDP TT+K R+NN+G+ASAL+QH WRP Sbjct: 189 HLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRP 248 Query: 356 KSVITFSTEVDTKAVEKSPKFGLALSLK 439 KS +T S +VDTKA+EKS K GL+L LK Sbjct: 249 KSFVTISGDVDTKAIEKSTKVGLSLVLK 276
>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1| (Voltage-dependent anion-selective channel protein 1) (VDAC 1) Length = 275 Score = 185 bits (469), Expect = 1e-46 Identities = 94/148 (63%), Positives = 114/148 (77%), Gaps = 2/148 (1%) Frame = +2 Query: 5 VNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYH 184 VN SGVIG+ LA G V+FDT SG+FTK NAG+S T +DL ASL +N+KG+ L ASYYH Sbjct: 128 VNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYH 187 Query: 185 QVQ--LTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPK 358 V TAVGAE++H SS ++TITVGTQH LDPLT++K R N+ GIASALIQH W+PK Sbjct: 188 IVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPK 247 Query: 359 SVITFSTEVDTKAVEKSPKFGLALSLKP 442 S T S EVDTK+++KS K GLAL+LKP Sbjct: 248 SFFTISGEVDTKSIDKSAKVGLALALKP 275
>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 273 Score = 185 bits (469), Expect = 1e-46 Identities = 90/147 (61%), Positives = 113/147 (76%) Frame = +2 Query: 2 LVNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYY 181 +VN SGV+GT L+ G VA++T SG+F +NAG + T DLTASL+LN+KG L ASYY Sbjct: 127 IVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYY 186 Query: 182 HQVQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKS 361 V +T VGAEI+H+F++ EN ITVGTQH LDPLTT+K R NN G+A+ALIQH WRPKS Sbjct: 187 QIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKS 246 Query: 362 VITFSTEVDTKAVEKSPKFGLALSLKP 442 T S EVD+KA++KS K G+AL+LKP Sbjct: 247 FFTVSGEVDSKAIDKSAKVGIALALKP 273
>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 275 Score = 183 bits (464), Expect = 4e-46 Identities = 92/149 (61%), Positives = 111/149 (74%), Gaps = 2/149 (1%) Frame = +2 Query: 2 LVNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYY 181 +VN S VIGT ALAFG ++FDT G+ TK NA ++ DL SL LN KG+ L+ASYY Sbjct: 127 IVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYY 186 Query: 182 HQVQ--LTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRP 355 H + TAVG +I+H FS+ ENT T+GTQH LDPLTT+KGR N G ASALIQH WRP Sbjct: 187 HAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRP 246 Query: 356 KSVITFSTEVDTKAVEKSPKFGLALSLKP 442 KS+IT S+EVDTKA+EKS K GL+L+LKP Sbjct: 247 KSLITISSEVDTKAIEKSAKIGLSLALKP 275
>VDAC_SCHPO (Q9P544) Probable outer mitochondrial membrane protein porin| Length = 282 Score = 61.2 bits (147), Expect = 2e-09 Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Frame = +2 Query: 23 IGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTT 202 +G + G +D G+ + Y A + + L+ +L +N + ASYYH+V Sbjct: 140 VGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDV 199 Query: 203 AVGAEIAHSFSSNENTIT--VGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFS 376 G + +S N IT + +++ LD T +KG+ N+ G+A+ RP + Sbjct: 200 EAGGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLG 259 Query: 377 TEVDTKAV-EKSPKFGLALS 433 ++DT+ + + + K GL+L+ Sbjct: 260 LQLDTQRLGQPAHKAGLSLA 279
>VDAC_NEUCR (P07144) Outer mitochondrial membrane protein porin| Length = 283 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/135 (22%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Frame = +2 Query: 8 NISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQ 187 NI ++G + G + +D T Y+A + + +A++ + + +ASYYH+ Sbjct: 137 NIDAIVGHEGFLAGASAGYDVQKAAITGYSAAVGYHAPTYSAAITATDNLSVFSASYYHK 196 Query: 188 VQLTTAVGAEIA-HSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSV 364 V G++ +S + N + V T++ +DP++ +KG+ N+ G+A+ R Sbjct: 197 VNSQVEAGSKATWNSKTGNTVGLEVATKYRIDPVSFVKGKINDRGVAAIAYNVLLREGVT 256 Query: 365 ITFSTEVDTKAVEKS 409 + DT+ ++++ Sbjct: 257 LGVGASFDTQKLDQA 271
>VDAC_DROME (Q94920) Voltage-dependent anion-selective channel (Porin) (DmVDAC)| Length = 281 Score = 55.8 bits (133), Expect = 9e-08 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 1/147 (0%) Frame = +2 Query: 2 LVNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYY 181 L+N S V+G + G AFDT T N + +T +D +N+ G + S + Sbjct: 135 LINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVND-GQEFSGSIF 193 Query: 182 HQVQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKS 361 + VG +++ + ++ +G +++LD +++ + NN Q R Sbjct: 194 QRTSDKLDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKLRDGV 253 Query: 362 VITFSTEVDTKAVEK-SPKFGLALSLK 439 +T ST VD K K G+ L L+ Sbjct: 254 TLTLSTLVDGKNFNAGGHKIGVGLELE 280
>VDAC2_XENLA (P81004) Voltage-dependent anion-selective channel protein 2 (Outer| mitochondrial membrane protein porin) Length = 282 Score = 52.0 bits (123), Expect = 1e-06 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 1/143 (0%) Frame = +2 Query: 14 SGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQ 193 S V+G + G + FD+A TK N + + D +N+ G+ A S Y +V Sbjct: 140 SAVVGYEGWLAGYQMTFDSAKSKLTKNNFAVGYKTGDFQLHTNVND-GSEFAGSIYQKVS 198 Query: 194 LTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITF 373 +A + +N + +++LD + + NN + RP +T Sbjct: 199 DKMETAVNLAWTSGNNSTRFGIAAKYQLDSHAAISAKVNNSSLVGVGYTQTLRPGVKLTL 258 Query: 374 STEVDTKAVEK-SPKFGLALSLK 439 S VD K + K GL L L+ Sbjct: 259 SALVDGKNINAGGHKLGLGLELE 281
>VDAC2_RAT (P81155) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (Outer mitochondrial membrane protein porin 2) (B36-VDAC) Length = 295 Score = 51.6 bits (122), Expect = 2e-06 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 1/143 (0%) Frame = +2 Query: 14 SGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQ 193 S V G + G + FD+A T+ N + + D +NN G S Y +V Sbjct: 153 SAVFGYEGWLAGYQMTFDSAKSKLTRSNFAVGYRTGDFQLHTNVNN-GTEFGGSIYQKVC 211 Query: 194 LTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITF 373 +A + +N + +++LDP ++ + NN + RP +T Sbjct: 212 EDFDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTL 271 Query: 374 STEVDTKAVEK-SPKFGLALSLK 439 S VD K+ K GLAL L+ Sbjct: 272 SALVDGKSFNAGGHKLGLALELE 294
>VDAC2_MOUSE (Q60930) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (mVDAC2) (mVDAC6) (Outer mitochondrial membrane protein porin 2) Length = 295 Score = 51.6 bits (122), Expect = 2e-06 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 1/143 (0%) Frame = +2 Query: 14 SGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQ 193 S V G + G + FD+A T+ N + + D +NN G S Y +V Sbjct: 153 SAVFGYEGWLAGYQMTFDSAKSKLTRSNFAVGYRTGDFQLHTNVNN-GTEFGGSIYQKVC 211 Query: 194 LTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITF 373 +A + +N + +++LDP ++ + NN + RP +T Sbjct: 212 EDFDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTL 271 Query: 374 STEVDTKAVEK-SPKFGLALSLK 439 S VD K+ K GLAL L+ Sbjct: 272 SALVDGKSFNAGGHKLGLALELE 294
>VDAC2_YEAST (P40478) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 281 Score = 37.4 bits (85), Expect = 0.032 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 5/148 (3%) Frame = +2 Query: 14 SGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQ 193 S +G + G +A+DTA+G +Y + + ++ + L NN+ AS++ V Sbjct: 138 SVTLGHRGFVGGTDIAYDTAAGLCARYAMSIGYLAREYSFILSTNNR-QCATASFFQNVN 196 Query: 194 LTTAVG--AEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVI 367 VG A + SSN N I T++ D ++ +K + + G+ + + + I Sbjct: 197 RYLQVGTKATLQSKTSSNMN-IEFVTRYVPDSISQVKAKIADSGLTT--LSYKRNLNKDI 253 Query: 368 TFSTEVDTKAV---EKSPKFGLALSLKP 442 + + A+ E KFG +LS P Sbjct: 254 SLGVGMSFNALQLTEPVHKFGWSLSFSP 281
>TO401_ARATH (Q9LHE5) Mitochondrial import receptor subunit TOM40 homolog 1| (Translocase of outer membrane 40 kDa subunit homolog 1) Length = 308 Score = 32.7 bits (73), Expect = 0.80 Identities = 21/88 (23%), Positives = 45/88 (51%) Frame = +2 Query: 173 SYYHQVQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWR 352 +Y ++ ++ + +++ S + T +VG + L ++G+ ++ G+ASAL++ Sbjct: 223 NYVQKISDKVSLATDFMYNYFSRDVTASVGYDYMLRQ-ARVRGKIDSNGVASALLEERLS 281 Query: 353 PKSVITFSTEVDTKAVEKSPKFGLALSL 436 S E+D K +K KFG L++ Sbjct: 282 MGLNFLLSAELDHK--KKDYKFGFGLTV 307
>FLGI_ERWCT (Q6D6H2) Flagellar P-ring protein precursor (Basal body P-ring| protein) Length = 369 Score = 32.3 bits (72), Expect = 1.0 Identities = 27/69 (39%), Positives = 33/69 (47%) Frame = +2 Query: 2 LVNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYY 181 LVNI GV G + +GL V D SGD T T Q LT ML+ G T+ A Sbjct: 29 LVNIQGVRGNALIGYGLVVGLD-GSGDQTMQT---PFTTQSLTN--MLSQLGITVPAGTN 82 Query: 182 HQVQLTTAV 208 Q++ AV Sbjct: 83 MQLKNVAAV 91
>TOM40_XENTR (Q6P825) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 336 Score = 32.0 bits (71), Expect = 1.4 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Frame = +2 Query: 29 TKALAFGLAVAFDTASGDF-TKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTA 205 T +LA G + + G+ T + +T + TA+L L G A+YYH+ Sbjct: 201 TPSLALGGELVYHRRPGEEGTVMSLAGRYTAPNWTATLTLGQAG--AHATYYHKANDQLQ 258 Query: 206 VGAEIAHSFSSNENTITVGTQHELDPLTTL-KGRYNNFGIASALIQHAWRP 355 VG E S + +++ G Q +L L KG ++ I A ++ P Sbjct: 259 VGVEFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPP 309
>VIRB9_AGRTU (P0A3W6) Protein virB9 precursor| Length = 293 Score = 32.0 bits (71), Expect = 1.4 Identities = 31/116 (26%), Positives = 50/116 (43%) Frame = +2 Query: 29 TKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAV 208 T+ F LA F A+G +D + L+ + LA + V+L+TAV Sbjct: 2 TRKALFILACLFAAATGAEA----------EDTPMAGKLDPRMRYLAYNPDQVVRLSTAV 51 Query: 209 GAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFS 376 GA + +F++NE +V + D +G Y F + L +P V+T S Sbjct: 52 GATLVVTFATNETVTSVAVSNSKDLAALPRGNYLFFKASQVLTP---QPVIVLTAS 104
>VIRB9_AGRT9 (P0A3W7) Protein virB9 precursor| Length = 293 Score = 32.0 bits (71), Expect = 1.4 Identities = 31/116 (26%), Positives = 50/116 (43%) Frame = +2 Query: 29 TKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAV 208 T+ F LA F A+G +D + L+ + LA + V+L+TAV Sbjct: 2 TRKALFILACLFAAATGAEA----------EDTPMAGKLDPRMRYLAYNPDQVVRLSTAV 51 Query: 209 GAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFS 376 GA + +F++NE +V + D +G Y F + L +P V+T S Sbjct: 52 GATLVVTFATNETVTSVAVSNSKDLAALPRGNYLFFKASQVLTP---QPVIVLTAS 104
>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (mPER) (M-Rigui) Length = 1291 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +1 Query: 163 PGCFL--LPPGAAHHCCGSRDRSQLLEQREHHHR 258 PGC +PPG HHC RS+ R HHH+ Sbjct: 817 PGCHHGPIPPGRRHHC-----RSKAKRSRHHHHQ 845
>TOM40_XENLA (Q7ZTM6) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 336 Score = 31.2 bits (69), Expect = 2.3 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Frame = +2 Query: 29 TKALAFGLAVAFDTASGDF-TKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTA 205 T +LA G + + G+ T + +T TA+L L G A+YYH+ Sbjct: 201 TPSLALGGELVYHRRPGEEGTVMSLAGRYTAPSWTATLTLGQAG--AHATYYHKANDQLQ 258 Query: 206 VGAEIAHSFSSNENTITVGTQHELDPLTTL-KGRYNNFGIASALIQHAWRP 355 +G E S + ++++G Q +L L KG ++ I A ++ P Sbjct: 259 LGVEFEASARMQDTSVSLGYQLDLPKANLLFKGSIDSNWIVGATLEKKLPP 309
>VIRB9_AGRT5 (P17799) Protein virB9 precursor| Length = 293 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/72 (27%), Positives = 33/72 (45%) Frame = +2 Query: 119 QDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLK 298 +D + L+ + LA + V+L+TAVGA + +F +NE V + D + Sbjct: 22 EDTPTAGRLDPRMRYLAYNPDQVVRLSTAVGATLVVTFGANETVTAVAVSNSKDLAALPR 81 Query: 299 GRYNNFGIASAL 334 G Y F + L Sbjct: 82 GNYLFFKASKVL 93
>FUR_HAEDU (P71333) Ferric uptake regulation protein (Ferric uptake regulator)| Length = 149 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/64 (25%), Positives = 27/64 (42%) Frame = +2 Query: 89 KYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIAHSFSSNENTITVGTQ 268 +Y M H + + L+L + A+ Y + VG + H+F SN+ + Sbjct: 29 QYREEMQHFSAEDIYKLLLEQSSDIGLATVYRVLNQFEEVGILLRHNFDSNKAVFELNVD 88 Query: 269 HELD 280 HE D Sbjct: 89 HEHD 92
>YA00_PYRHO (O58728) Hypothetical UPF0118 protein PH1000| Length = 355 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/56 (28%), Positives = 23/56 (41%) Frame = -2 Query: 168 ARVFPLLFSINEAVRSWLVWLIPALYLVKSPEAVSNATARPKARALVPITPEMLTR 1 A + +LFS W++WL A YLVK ++ LV P+ R Sbjct: 242 AGLLTVLFSFIPLFEGWMIWLAGAFYLVKQGHIIAGIGLAVYGFTLVSPLPDFTIR 297
>ANR21_HUMAN (Q86YR6) Ankyrin repeat domain-containing protein 21 (Protein POTE)| (Prostate, ovary, testis expressed protein) Length = 584 Score = 30.0 bits (66), Expect = 5.2 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -3 Query: 161 CFPCCSASTKQ*DLG*YGSFQHCTW*SPQRQYQMQLQD 48 CFPCC S+K ++G +G + H + P +Y ++ +D Sbjct: 105 CFPCCRGSSKS-NVGAWGDYDHSAFMEP--RYHVRRED 139
>TOM40_RAT (Q75Q40) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) (38 kDa mitochondrial outer membrane protein) (OM38) Length = 361 Score = 29.6 bits (65), Expect = 6.7 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Frame = +2 Query: 29 TKALAFGLAVAFDTASGDF-TKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTA 205 T LA G + + G+ T + +T + A++ L G + A+YYH+ Sbjct: 226 TPCLALGGELVYHRRPGEKGTVMSLAGKYTLNNWLATVTLGQAG--MHATYYHKASDQLQ 283 Query: 206 VGAEIAHSFSSNENTITVGTQHELDPLTTL-KGRYNNFGIASALIQHAWRP 355 VG E S + + + G Q +L L KG N+ I A ++ P Sbjct: 284 VGVEFEASTRMQDTSASFGYQLDLPKANFLFKGSVNSNWIVGATLEKKLPP 334
>TOM40_HUMAN (O96008) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) (Haymaker protein) (p38.5) Length = 361 Score = 29.6 bits (65), Expect = 6.7 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Frame = +2 Query: 29 TKALAFGLAVAFDTASGDF-TKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTA 205 T LA G + + G+ T + +T + A++ L G + A+YYH+ Sbjct: 226 TPCLALGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAG--MHATYYHKASDQLQ 283 Query: 206 VGAEIAHSFSSNENTITVGTQHELDPLTTL-KGRYNNFGIASALIQHAWRP 355 VG E S + +++ G Q +L L KG ++ I A ++ P Sbjct: 284 VGVEFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPP 334
>PMPC_CHLTR (O84419) Probable outer membrane protein pmpC precursor| (Polymorphic membrane protein C) Length = 1770 Score = 29.6 bits (65), Expect = 6.7 Identities = 20/71 (28%), Positives = 34/71 (47%) Frame = +2 Query: 5 VNISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYH 184 + I+G+ GT + F +A D+ +G FTK N ++TN + + N+ G +Y Sbjct: 319 LTITGITGT--IDFVSNIATDSGAGVFTKENLSCTNTN---SLQFLKNSAGQHGGGAYVT 373 Query: 185 QVQLTTAVGAE 217 Q T +E Sbjct: 374 QTMSVTNTTSE 384
>TOM40_MOUSE (Q9QYA2) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 359 Score = 29.6 bits (65), Expect = 6.7 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Frame = +2 Query: 29 TKALAFGLAVAFDTASGDF-TKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTA 205 T LA G + + G+ T + +T + A++ L G + A+YYH+ Sbjct: 224 TPCLALGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAG--MHATYYHKASDQLQ 281 Query: 206 VGAEIAHSFSSNENTITVGTQHELDPLTTL-KGRYNNFGIASALIQHAWRP 355 VG E S + + + G Q +L L KG N+ I A ++ P Sbjct: 282 VGVEFEASTRMQDTSASFGYQLDLPKANFLFKGSVNSNWIVGATLEKKLPP 332
>GLMM_PSYAR (Q4FS01) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 455 Score = 29.3 bits (64), Expect = 8.8 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 11 ISGVIGTKALAFGLAVAFDTASGDFTKYNAGMSHTNQDLTAS 136 ++GV+GT GL +A A +FT+ G + Q+L A+ Sbjct: 286 VAGVVGTLMSNMGLELALKAADIEFTRAKVGDRYVMQELEAN 327
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 29.3 bits (64), Expect = 8.8 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Frame = +1 Query: 160 HPGCF--------LLPPGAAHHCCGSRDRSQLLEQREHHHRGDAARAGPPDHP*GALQQL 315 HPG F PP AHH + + Q Q + HH G+ +GPP P G Sbjct: 457 HPGPFPPTGGQSTAHPPAPAHHHHQQQQQPQPQPQPQQHHHGN---SGPP--PPG----- 506 Query: 316 WHRKCAHPARVEAQVCHH 369 A+P +E+ HH Sbjct: 507 -----AYPHPLESSNSHH 519
>Y2756_YERPE (Q8ZD36) UPF0209 protein YPO2756/y1590/YP2407| Length = 689 Score = 29.3 bits (64), Expect = 8.8 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 13/100 (13%) Frame = +2 Query: 80 DFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIAHSFSSNE----- 244 D Y AG DLT +LM+ + N + Y H++Q + ++ +F ++ Sbjct: 399 DGIHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHH 458 Query: 245 NTITVGTQHELD--------PLTTLKGRYNNFGIASALIQ 340 T+ + T H L PL+ ++G+ ++ L Q Sbjct: 459 ATVILATGHRLPEWEQTHHLPLSAVRGQVSHIPTTPVLSQ 498
>HNF1B_XENLA (Q91910) Hepatocyte nuclear factor 1-beta (HNF-1B) (LFB3) (XLFB3)| Length = 561 Score = 29.3 bits (64), Expect = 8.8 Identities = 16/65 (24%), Positives = 32/65 (49%) Frame = +2 Query: 116 NQDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTL 295 N ++T+S +++ GN +Q + VG + +HS S + + + L P++TL Sbjct: 359 NNEVTSSSTISHHGNNAMVHSQSVLQQVSPVGLDHSHSMLSPDGKLISVSGGGLPPVSTL 418 Query: 296 KGRYN 310 +N Sbjct: 419 TNIHN 423
>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (Ca(v)3.3) Length = 2223 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/24 (50%), Positives = 19/24 (79%) Frame = +3 Query: 207 WEQRSLTASRATRTPSPWGRSTSW 278 ++QRSL++SR++ PWGRS +W Sbjct: 962 YDQRSLSSSRSSYY-GPWGRSAAW 984
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 29.3 bits (64), Expect = 8.8 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = +2 Query: 89 KYNAGMSHTNQDLTASLMLNNKGNT--LAASYYHQVQLTTAVGAEIAHSFSSNEN 247 ++ AG SH +Q+++ S ++ GN+ + S V T I SFSS+EN Sbjct: 83 QFRAGSSHASQEVSLSYPQHHVGNSSPTSTSPSRTVDNMTPSAQTIQRSFSSSEN 137 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,371,616 Number of Sequences: 219361 Number of extensions: 1715523 Number of successful extensions: 4918 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4728 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4905 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
