| Clone Name | bags12e18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L32165.1|BLYHSPHAA Hordeum vulgare HSP70 mRNA, complete cds Length = 2028 Score = 222 bits (112), Expect = 2e-55 Identities = 119/120 (99%), Gaps = 1/120 (0%) Strand = Plus / Plus Query: 30 agagggatcggcgtcgtggcgatggatcgggcccgcggctccgcgctgctgctcggcgtc 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 agagggatcggcgtcgtggcgatggatcgggcccgcggctccgcgctgctgctcggcgtc 132 Query: 90 ctgctcgcaggttcgctgtttgcactttgtgccgcgaaggaggaggccaagnaagctcgg 149 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 133 ctgctcgcaggttcgctgtttgcactttgtgccgcgaaggaggaggccaag-aagctcgg 191
>ref|XM_463871.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2414 Score = 85.7 bits (43), Expect = 3e-14 Identities = 89/103 (86%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 47 ggcgatggatcgggcccgcggctccgcgctgctgctcggcgtcctgctcgcaggttcgct 106 |||||||||||||| ||||| | |||| | ||||||||||||||||||||||| || || Sbjct: 144 ggcgatggatcgggttcgcggatgcgcgttcctgctcggcgtcctgctcgcaggatccct 203 Query: 107 gtttgcactttgtgccgcgaaggaggaggccaagnaagctcgg 149 ||||||| ||| || |||||||||||| ||||| |||||||| Sbjct: 204 gtttgcattttctgttgcgaaggaggagaccaag-aagctcgg 245
>ref|XM_506683.1| PREDICTED Oryza sativa (japonica cultivar-group), P0036E06.29 mRNA Length = 2417 Score = 85.7 bits (43), Expect = 3e-14 Identities = 89/103 (86%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 47 ggcgatggatcgggcccgcggctccgcgctgctgctcggcgtcctgctcgcaggttcgct 106 |||||||||||||| ||||| | |||| | ||||||||||||||||||||||| || || Sbjct: 111 ggcgatggatcgggttcgcggatgcgcgttcctgctcggcgtcctgctcgcaggatccct 170 Query: 107 gtttgcactttgtgccgcgaaggaggaggccaagnaagctcgg 149 ||||||| ||| || |||||||||||| ||||| |||||||| Sbjct: 171 gtttgcattttctgttgcgaaggaggagaccaag-aagctcgg 212
>dbj|AK119653.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H01, full insert sequence Length = 2414 Score = 85.7 bits (43), Expect = 3e-14 Identities = 89/103 (86%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 47 ggcgatggatcgggcccgcggctccgcgctgctgctcggcgtcctgctcgcaggttcgct 106 |||||||||||||| ||||| | |||| | ||||||||||||||||||||||| || || Sbjct: 144 ggcgatggatcgggttcgcggatgcgcgttcctgctcggcgtcctgctcgcaggatccct 203 Query: 107 gtttgcactttgtgccgcgaaggaggaggccaagnaagctcgg 149 ||||||| ||| || |||||||||||| ||||| |||||||| Sbjct: 204 gtttgcattttctgttgcgaaggaggagaccaag-aagctcgg 245
>dbj|AK065743.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G16, full insert sequence Length = 2416 Score = 85.7 bits (43), Expect = 3e-14 Identities = 89/103 (86%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 47 ggcgatggatcgggcccgcggctccgcgctgctgctcggcgtcctgctcgcaggttcgct 106 |||||||||||||| ||||| | |||| | ||||||||||||||||||||||| || || Sbjct: 111 ggcgatggatcgggttcgcggatgcgcgttcctgctcggcgtcctgctcgcaggatccct 170 Query: 107 gtttgcactttgtgccgcgaaggaggaggccaagnaagctcgg 149 ||||||| ||| || |||||||||||| ||||| |||||||| Sbjct: 171 gtttgcattttctgttgcgaaggaggagaccaag-aagctcgg 212
>gb|AF006825.1|AF006825 Oryza sativa endosperm lumenal binding protein (BiP) mRNA, complete cds Length = 2417 Score = 77.8 bits (39), Expect = 9e-12 Identities = 85/99 (85%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 51 atggatcgggcccgcggctccgcgctgctgctcggcgtcctgctcgcaggttcgctgttt 110 |||||||||| ||||| || ||| | ||||||||||||||||||||||| || |||||| Sbjct: 121 atggatcgggttcgcggatctgcgttcctgctcggcgtcctgctcgcaggatccctgttt 180 Query: 111 gcactttgtgccgcgaaggaggaggccaagnaagctcgg 149 ||| ||| || |||||||||||| ||||| |||||||| Sbjct: 181 gcattttctgttgcgaaggaggagaccaag-aagctcgg 218
>gb|U58208.1|ZMU58208 Zea mays lumenal binding protein cBiPe2 mRNA, complete cds Length = 2338 Score = 67.9 bits (34), Expect = 8e-09 Identities = 46/50 (92%) Strand = Plus / Plus Query: 51 atggatcgggcccgcggctccgcgctgctgctcggcgtcctgctcgcagg 100 ||||||||||| ||||| |||||| | ||||||||||||||||||||||| Sbjct: 127 atggatcgggctcgcggatccgcgttcctgctcggcgtcctgctcgcagg 176
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 61.9 bits (31), Expect = 5e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 47 ggcgatggatcgggcccgcggctccgcgctgctgctcggcgtcctgctcgcaggt 101 |||||||||||||| ||||| | |||| | |||||||||||||||||||||||| Sbjct: 842529 ggcgatggatcgggttcgcggatgcgcgttcctgctcggcgtcctgctcgcaggt 842475
>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1442_E05 Length = 162407 Score = 61.9 bits (31), Expect = 5e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 47 ggcgatggatcgggcccgcggctccgcgctgctgctcggcgtcctgctcgcaggt 101 |||||||||||||| ||||| | |||| | |||||||||||||||||||||||| Sbjct: 51737 ggcgatggatcgggttcgcggatgcgcgttcctgctcggcgtcctgctcgcaggt 51683
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 61.9 bits (31), Expect = 5e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 47 ggcgatggatcgggcccgcggctccgcgctgctgctcggcgtcctgctcgcaggt 101 |||||||||||||| ||||| | |||| | |||||||||||||||||||||||| Sbjct: 120660 ggcgatggatcgggttcgcggatgcgcgttcctgctcggcgtcctgctcgcaggt 120606
>gb|U58209.1|ZMU58209 Zea mays lumenal binding protein cBiPe3 mRNA, complete cds Length = 2365 Score = 54.0 bits (27), Expect = 1e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 51 atggatcgggcccgcggctccgcgctgctgctcggcgtcctgctcgcaggttcgctgtt 109 |||||||||| || || |||||| | ||||||||||||||||||||||| || ||||| Sbjct: 110 atggatcgggttcgtggatccgcgttcctgctcggcgtcctgctcgcaggatccctgtt 168
>ref|XM_366839.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02915.4) partial mRNA Length = 1548 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 76 tgctgctcggcgtcctgctcgc 97 |||||||||||||||||||||| Sbjct: 953 tgctgctcggcgtcctgctcgc 932
>ref|XM_604433.2| PREDICTED: Bos taurus similar to family with sequence similarity 62 (C2 domain containing), member C (LOC526074), mRNA Length = 333 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 gctgctgctcggcgtcctgct 94 ||||||||||||||||||||| Sbjct: 174 gctgctgctcggcgtcctgct 194
>ref|NM_031322.1| Rattus norvegicus low density lipoprotein receptor-related protein 4 (Lrp4), mRNA Length = 7784 Score = 42.1 bits (21), Expect = 0.47 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 cgcgctgctgctcggcgtcctgctc 95 ||||||||||||||||| ||||||| Sbjct: 31 cgcgctgctgctcggcgccctgctc 55
>dbj|AB073317.1| Rattus norvegicus LRP13 mRNA for LDL receptor-related protein 13, complete cds Length = 7784 Score = 42.1 bits (21), Expect = 0.47 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 cgcgctgctgctcggcgtcctgctc 95 ||||||||||||||||| ||||||| Sbjct: 31 cgcgctgctgctcggcgccctgctc 55
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 0.47 Identities = 24/25 (96%) Strand = Plus / Plus Query: 72 gcgctgctgctcggcgtcctgctcg 96 ||||||||||||||| ||||||||| Sbjct: 2716001 gcgctgctgctcggcatcctgctcg 2716025
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 gctgctgctcggcgtcctgctcgc 97 ||||||||||||| |||||||||| Sbjct: 619865 gctgctgctcggcatcctgctcgc 619842 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 75 ctgctgctcggcgtcctgctcgc 97 |||||||||||| |||||||||| Sbjct: 1290584 ctgctgctcggcatcctgctcgc 1290562
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cgcgctgctgctcggcgtcc 90 |||||||||||||||||||| Sbjct: 96902 cgcgctgctgctcggcgtcc 96883 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 75 ctgctgctcggcgtcctgctcgc 97 |||||||||||| |||||||||| Sbjct: 3177624 ctgctgctcggcatcctgctcgc 3177646
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cgcgctgctgctcggcgtcc 90 |||||||||||||||||||| Sbjct: 604865 cgcgctgctgctcggcgtcc 604884
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 gctgctgctcggcgtcctgctcgc 97 |||||||||||||| ||||||||| Sbjct: 4122739 gctgctgctcggcggcctgctcgc 4122762
>ref|XM_863446.1| PREDICTED: Canis familiaris hypothetical protein LOC611725 (LOC611725), mRNA Length = 483 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ccgcgctgctgctcggcgtc 89 |||||||||||||||||||| Sbjct: 455 ccgcgctgctgctcggcgtc 436
>emb|BX927325.15| Zebrafish DNA sequence from clone DKEYP-47G1 in linkage group 7, complete sequence Length = 208845 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ggttcgctgtttgcactttg 118 |||||||||||||||||||| Sbjct: 125187 ggttcgctgtttgcactttg 125206
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ccgcgctgctgctcggcgtc 89 |||||||||||||||||||| Sbjct: 2463721 ccgcgctgctgctcggcgtc 2463702
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ccgcgctgctgctcggcgtc 89 |||||||||||||||||||| Sbjct: 2298917 ccgcgctgctgctcggcgtc 2298936 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 tccgcgctgctgctcggcg 87 ||||||||||||||||||| Sbjct: 2713428 tccgcgctgctgctcggcg 2713446
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cgcgctgctgctcggcgtcc 90 |||||||||||||||||||| Sbjct: 413401 cgcgctgctgctcggcgtcc 413420 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 75 ctgctgctcggcgtcctgctcgc 97 |||||||||||| |||||||||| Sbjct: 1510414 ctgctgctcggcatcctgctcgc 1510392
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ccgcgctgctgctcggcgtc 89 |||||||||||||||||||| Sbjct: 920253 ccgcgctgctgctcggcgtc 920234 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 65 cggctccgcgctgctgctcggcg 87 |||| |||||||||||||||||| Sbjct: 356669 cggcaccgcgctgctgctcggcg 356691
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gctccgcgctgctgctcggc 86 |||||||||||||||||||| Sbjct: 8442455 gctccgcgctgctgctcggc 8442436
>dbj|AK109965.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-B12, full insert sequence Length = 3315 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tgctcggcgtcctgctcgca 98 |||||||||||||||||||| Sbjct: 1174 tgctcggcgtcctgctcgca 1193
>ref|XM_511286.1| PREDICTED: Pan troglodytes similar to proline-, glutamic acid-, leucine-rich protein 1; proline and glutamic acid rich nuclear protein; modulator of nongenomic activity of estrogen receptor (LOC454449), mRNA Length = 3606 Score = 38.2 bits (19), Expect = 7.3 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 56 tcgggcccgcggctccgcgctgctgct 82 |||||||||||||||||| |||||||| Sbjct: 391 tcgggcccgcggctccgc-ctgctgct 416
>ref|NM_196934.1| Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBa0006L06.16), mRNA Length = 2823 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 tcggcgtcgtggcgatgga 55 ||||||||||||||||||| Sbjct: 2444 tcggcgtcgtggcgatgga 2462
>ref|XM_477007.1| Oryza sativa (japonica cultivar-group), mRNA Length = 390 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 ctgctgctcggcgtcctgc 93 ||||||||||||||||||| Sbjct: 118 ctgctgctcggcgtcctgc 136
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggctccgcgctgctgctcg 84 ||||||||||||||||||| Sbjct: 500734 ggctccgcgctgctgctcg 500716
>ref|XM_414601.1| PREDICTED: Gallus gallus similar to r-goliath (LOC416281), mRNA Length = 1601 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 gcggctccgcgctgctgct 82 ||||||||||||||||||| Sbjct: 185 gcggctccgcgctgctgct 203
>gb|AC186559.1| Gasterosteus aculeatus clone VMRC26-231K03, complete sequence Length = 150088 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 tttgtgccgcgaaggagga 133 ||||||||||||||||||| Sbjct: 35122 tttgtgccgcgaaggagga 35140
>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence Length = 194380 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 64 gcggctccgcgctgctgctcggc 86 |||||||| |||||||||||||| Sbjct: 46098 gcggctccccgctgctgctcggc 46076
>ref|XM_846862.1| PREDICTED: Canis familiaris similar to pleckstrin homology domain containing, family G (with RhoGef domain) member 4 (LOC609578), mRNA Length = 4407 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 tgtgccgcgaaggaggagg 135 ||||||||||||||||||| Sbjct: 974 tgtgccgcgaaggaggagg 992
>ref|XM_972890.1| PREDICTED: Mus musculus hypothetical protein LOC669075 (LOC669075), mRNA Length = 671 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 64 gcggctccgcgctgctgctcggc 86 |||||||| |||||||||||||| Sbjct: 423 gcggctccccgctgctgctcggc 445
>ref|XM_978837.1| PREDICTED: Mus musculus hypothetical protein LOC665705 (LOC665705), mRNA Length = 671 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 64 gcggctccgcgctgctgctcggc 86 |||||||| |||||||||||||| Sbjct: 423 gcggctccccgctgctgctcggc 445
>ref|XM_988956.1| PREDICTED: Mus musculus hypothetical protein LOC676306 (LOC676306), mRNA Length = 671 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 64 gcggctccgcgctgctgctcggc 86 |||||||| |||||||||||||| Sbjct: 423 gcggctccccgctgctgctcggc 445
>ref|XM_838124.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1040) partial mRNA Length = 3150 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ggctccgcgctgctgctcg 84 ||||||||||||||||||| Sbjct: 1353 ggctccgcgctgctgctcg 1335
>ref|XM_850145.1| PREDICTED: Canis familiaris hypothetical protein LOC612412 (LOC612412), mRNA Length = 990 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 gctgctgctcggcgtcctg 92 ||||||||||||||||||| Sbjct: 828 gctgctgctcggcgtcctg 846
>gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, complete sequence Length = 197964 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 64 gcggctccgcgctgctgctcggc 86 |||||||| |||||||||||||| Sbjct: 7724 gcggctccccgctgctgctcggc 7746
>ref|NM_001040149.1| Macaca mulatta proline, glutamic acid and leucine rich protein 1 (PELP1), mRNA Length = 3393 Score = 38.2 bits (19), Expect = 7.3 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 56 tcgggcccgcggctccgcgctgctgct 82 |||||||||||||||||| |||||||| Sbjct: 85 tcgggcccgcggctccgc-ctgctgct 110
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 cgcgctgctgctcggcgtc 89 ||||||||||||||||||| Sbjct: 4743566 cgcgctgctgctcggcgtc 4743584
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 cgcgctgctgctcggcgtc 89 ||||||||||||||||||| Sbjct: 4430182 cgcgctgctgctcggcgtc 4430164 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 cggctccgcgctgctgctcggcg 87 |||| |||||||||||||||||| Sbjct: 452534 cggcaccgcgctgctgctcggcg 452512
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 gctgctgctcggcgtcctg 92 ||||||||||||||||||| Sbjct: 333606 gctgctgctcggcgtcctg 333624
>gb|AC091153.10| Homo sapiens chromosome 17, clone RP11-314A20, complete sequence Length = 195494 Score = 38.2 bits (19), Expect = 7.3 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 56 tcgggcccgcggctccgcgctgctgct 82 |||||||||||||||||| |||||||| Sbjct: 78007 tcgggcccgcggctccgc-ctgctgct 78032
>gb|AC018635.10| Homo sapiens chromosome 7 clone RP11-62J1, complete sequence Length = 163547 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 ccgcggctccgcgctgctg 80 ||||||||||||||||||| Sbjct: 140207 ccgcggctccgcgctgctg 140189
>gb|DQ447200.1| Macaca mulatta modulator of nongenomic activity of estrogen receptor mRNA, complete cds Length = 3393 Score = 38.2 bits (19), Expect = 7.3 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 56 tcgggcccgcggctccgcgctgctgct 82 |||||||||||||||||| |||||||| Sbjct: 85 tcgggcccgcggctccgc-ctgctgct 110
>emb|X56844.1|SPKINHC S.purpuratus mRNA for kinesin heavy chain Length = 5214 Score = 38.2 bits (19), Expect = 7.3 Identities = 24/26 (92%) Strand = Plus / Plus Query: 119 tgccgcgaaggaggaggccaagnaag 144 |||||| ||||||||||||||| ||| Sbjct: 1450 tgccgccaaggaggaggccaaggaag 1475
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 tgctcggcgtcctgctcgc 97 ||||||||||||||||||| Sbjct: 3781518 tgctcggcgtcctgctcgc 3781536
>gb|AC027820.12| Homo sapiens chromosome 17, clone RP11-198F11, complete sequence Length = 154353 Score = 38.2 bits (19), Expect = 7.3 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 56 tcgggcccgcggctccgcgctgctgct 82 |||||||||||||||||| |||||||| Sbjct: 117597 tcgggcccgcggctccgc-ctgctgct 117622
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 ctccgcgctgctgctcggc 86 ||||||||||||||||||| Sbjct: 260124 ctccgcgctgctgctcggc 260106
>ref|NM_014389.1| Homo sapiens proline, glutamic acid and leucine rich protein 1 (PELP1), mRNA Length = 3393 Score = 38.2 bits (19), Expect = 7.3 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 56 tcgggcccgcggctccgcgctgctgct 82 |||||||||||||||||| |||||||| Sbjct: 85 tcgggcccgcggctccgc-ctgctgct 110
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 tcggcgtcgtggcgatgga 55 ||||||||||||||||||| Sbjct: 97184 tcggcgtcgtggcgatgga 97166
>gb|DQ397868.1| Cenarchaeum symbiosum clone C21C08, complete sequence Length = 37487 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 aagctccagtacgaggcga 19 ||||||||||||||||||| Sbjct: 10970 aagctccagtacgaggcga 10952
>gb|U88153.2|HSU88153 Homo sapiens PELP1 mRNA, complete cds Length = 3910 Score = 38.2 bits (19), Expect = 7.3 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 56 tcgggcccgcggctccgcgctgctgct 82 |||||||||||||||||| |||||||| Sbjct: 85 tcgggcccgcggctccgc-ctgctgct 110
>emb|BX323849.10| Zebrafish DNA sequence from clone DKEY-107K2 in linkage group 7, complete sequence Length = 156579 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 77 gctgctcggcgtcctgctcgcag 99 ||||||| ||||||||||||||| Sbjct: 63616 gctgctcagcgtcctgctcgcag 63638
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 72 gcgctgctgctcggcgtcctgct 94 |||||||||||||||||| |||| Sbjct: 3672099 gcgctgctgctcggcgtcatgct 3672077
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 gcccgcggctccgcgctgc 78 ||||||||||||||||||| Sbjct: 4417205 gcccgcggctccgcgctgc 4417223
>gb|AC010655.7| Homo sapiens chromosome 7 clone RP11-155G14, complete sequence Length = 165090 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 ccgcggctccgcgctgctg 80 ||||||||||||||||||| Sbjct: 31579 ccgcggctccgcgctgctg 31561
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 gatcggcgtcgtggcgatg 53 ||||||||||||||||||| Sbjct: 1522790 gatcggcgtcgtggcgatg 1522808
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 65 cggctccgcgctgctgctcggcg 87 |||| |||||||||||||||||| Sbjct: 478315 cggcaccgcgctgctgctcggcg 478337
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 75 ctgctgctcggcgtcctgctcgc 97 |||||||||||| |||||||||| Sbjct: 671229 ctgctgctcggcatcctgctcgc 671207 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 gctcggcgtcctgctcgca 98 ||||||||||||||||||| Sbjct: 204815 gctcggcgtcctgctcgca 204833
>emb|CR353986.1| Gallus gallus finished cDNA, clone ChEST100n1 Length = 1670 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 gcggctccgcgctgctgct 82 ||||||||||||||||||| Sbjct: 256 gcggctccgcgctgctgct 274
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 tcggcgtcgtggcgatgga 55 ||||||||||||||||||| Sbjct: 16752667 tcggcgtcgtggcgatgga 16752649
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 75 ctgctgctcggcgtcctgc 93 ||||||||||||||||||| Sbjct: 5339750 ctgctgctcggcgtcctgc 5339732
>gb|AC146031.4| Pan troglodytes BAC clone RP43-124G6 from chromosome 7, complete sequence Length = 172449 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 ccgcggctccgcgctgctg 80 ||||||||||||||||||| Sbjct: 70071 ccgcggctccgcgctgctg 70089
>ref|NM_214463.1| Strongylocentrotus purpuratus kinesin heavy chain (LOC373178), mRNA Length = 5214 Score = 38.2 bits (19), Expect = 7.3 Identities = 24/26 (92%) Strand = Plus / Plus Query: 119 tgccgcgaaggaggaggccaagnaag 144 |||||| ||||||||||||||| ||| Sbjct: 1450 tgccgccaaggaggaggccaaggaag 1475
>gb|AE004717.1| Pseudomonas aeruginosa PAO1, section 278 of 529 of the complete genome Length = 10459 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 75 ctgctgctcggcgtcctgctcgc 97 ||||||||||||| ||||||||| Sbjct: 7528 ctgctgctcggcgccctgctcgc 7550
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 61 cccgcggctccgcgctgctgctcggcg 87 |||||||| ||||||||||| |||||| Sbjct: 4744941 cccgcggcaccgcgctgctggtcggcg 4744967
>dbj|AP005257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0417F02 Length = 150660 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 75 ctgctgctcggcgtcctgc 93 ||||||||||||||||||| Sbjct: 74114 ctgctgctcggcgtcctgc 74096
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 ccgcgctgctgctcggcgt 88 ||||||||||||||||||| Sbjct: 2021021 ccgcgctgctgctcggcgt 2021003 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 75 ctgctgctcggcgtcctgctcgc 97 |||||||||||| |||||||||| Sbjct: 1344702 ctgctgctcggcatcctgctcgc 1344680
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 gcggctccgcgctgctgct 82 ||||||||||||||||||| Sbjct: 3180980 gcggctccgcgctgctgct 3180998
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 tcggcgtcgtggcgatgga 55 ||||||||||||||||||| Sbjct: 16761707 tcggcgtcgtggcgatgga 16761689
>gb|BC069058.1| Homo sapiens proline, glutamic acid and leucine rich protein 1, mRNA (cDNA clone MGC:70420 IMAGE:6068755), complete cds Length = 3456 Score = 38.2 bits (19), Expect = 7.3 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 56 tcgggcccgcggctccgcgctgctgct 82 |||||||||||||||||| |||||||| Sbjct: 85 tcgggcccgcggctccgc-ctgctgct 110
>gb|BC039131.1| Homo sapiens proline, glutamic acid and leucine rich protein 1, mRNA (cDNA clone IMAGE:4158475), with apparent retained intron Length = 3453 Score = 38.2 bits (19), Expect = 7.3 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 56 tcgggcccgcggctccgcgctgctgct 82 |||||||||||||||||| |||||||| Sbjct: 38 tcgggcccgcggctccgc-ctgctgct 63
>gb|AF547989.1| Homo sapiens MNAR (MNAR) mRNA, complete cds Length = 3393 Score = 38.2 bits (19), Expect = 7.3 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 56 tcgggcccgcggctccgcgctgctgct 82 |||||||||||||||||| |||||||| Sbjct: 85 tcgggcccgcggctccgc-ctgctgct 110 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 812,675 Number of Sequences: 3902068 Number of extensions: 812675 Number of successful extensions: 59108 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 55699 Number of HSP's gapped (non-prelim): 3419 length of query: 152 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 131 effective length of database: 17,151,101,840 effective search space: 2246794341040 effective search space used: 2246794341040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)