Clone Information

BLAST Search Result

Clone Name	bags12e12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polype...	172	6e-43
2	RPB5_PONPY (Q5R587) DNA-directed RNA polymerase II 23 kDa polype...	172	8e-43
3	RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polype...	172	8e-43
4	RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polyp...	171	1e-42
5	RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polyp...	117	7e-30
6	RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polyp...	115	7e-30
7	RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polyp...	115	3e-29
8	RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polyp...	115	5e-29
9	RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polyp...	126	5e-29
10	RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III ...	116	6e-29
11	RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polyp...	117	2e-28
12	RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polyp...	118	5e-27
13	RPOH_PYRAB (Q9V116) DNA-directed RNA polymerase subunit H (EC 2....	70	6e-12
14	RPOH_PYRHO (O74019) DNA-directed RNA polymerase subunit H (EC 2....	69	7e-12
15	RPOH_PYRFU (Q8U0M2) DNA-directed RNA polymerase subunit H (EC 2....	68	2e-11
16	RPOH_PYRKO (Q5JE31) DNA-directed RNA polymerase subunit H (EC 2....	68	2e-11
17	RPOH_METJA (Q58443) DNA-directed RNA polymerase subunit H (EC 2....	65	1e-10
18	RPOH_ARCFU (O28394) DNA-directed RNA polymerase subunit H (EC 2....	63	5e-10
19	RPOH_METTH (O27122) DNA-directed RNA polymerase subunit H (EC 2....	62	1e-09
20	RPOH_THECE (P31815) DNA-directed RNA polymerase subunit H (EC 2....	62	2e-09
21	RPOH_METMA (Q8PUQ8) DNA-directed RNA polymerase subunit H (EC 2....	61	3e-09
22	RPOH_METAC (Q8TRB4) DNA-directed RNA polymerase subunit H (EC 2....	60	4e-09
23	RPOH_METVA (P41559) DNA-directed RNA polymerase subunit H (EC 2....	59	1e-08
24	RPOH_SULTO (Q976A3) DNA-directed RNA polymerase subunit H (EC 2....	57	3e-08
25	RPOH_AERPE (Q9YAT3) DNA-directed RNA polymerase subunit H (EC 2....	57	5e-08
26	RPOH_METMP (P61519) DNA-directed RNA polymerase subunit H (EC 2....	56	6e-08
27	RPOH_SULAC (P11521) DNA-directed RNA polymerase subunit H (EC 2....	55	1e-07
28	RPO5_MIMIV (Q5UPX7) DNA-directed RNA polymerase subunit 5 (EC 2....	55	1e-07
29	RPOH_THEVO (Q979F2) DNA-directed RNA polymerase subunit H (EC 2....	55	1e-07
30	RPOH_PYRAE (Q8ZYR0) DNA-directed RNA polymerase subunit H (EC 2....	52	2e-06
31	RPOH_SULSO (Q980Q9) DNA-directed RNA polymerase subunit H (EC 2....	51	2e-06
32	RPOH_THEAC (Q03588) DNA-directed RNA polymerase subunit H (EC 2....	51	3e-06
33	RPOH_HALSA (P15740) DNA-directed RNA polymerase subunit H (EC 2....	49	1e-05
34	RPOH_METKA (Q8TXI5) DNA-directed RNA polymerase subunit H (EC 2....	47	3e-05
35	SMRCD_MOUSE (Q04692) SWI/SNF-related matrix-associated actin-dep...	33	0.45
36	RBP1_HUMAN (Q15311) RalA-binding protein 1 (RalBP1) (Ral-interac...	33	0.58
37	SMRCD_HUMAN (Q9H4L7) SWI/SNF-related matrix-associated actin-dep...	31	2.2
38	CD36_MESAU (P70110) Platelet glycoprotein 4 (Platelet glycoprote...	31	2.9
39	RBP1_MOUSE (Q62172) RalA-binding protein 1 (RalBP1) (Ral-interac...	30	3.8
40	VE2_HPV5B (P26545) Regulatory protein E2	30	3.8
41	GLMU_NITOC (Q3J6N3) Bifunctional protein glmU [Includes: UDP-N-a...	30	4.9
42	GLNE_VIBVY (Q7MNY4) Glutamate-ammonia-ligase adenylyltransferase...	30	6.4
43	GLNE_VIBVU (Q8DEH6) Glutamate-ammonia-ligase adenylyltransferase...	30	6.4
44	UPP_SULTO (Q975Z7) Probable uracil phosphoribosyltransferase (EC...	29	8.4

>RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polypeptide (EC|
           2.7.7.6) (RPB25) (RPB5) (RPABC1)
          Length = 210

 Score =  172 bits (436), Expect = 6e-43
 Identities = 85/147 (57%), Positives = 107/147 (72%)
 Frame = +2

Query: 98  REDMLINKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFA 277
           R D+ +     +DP DQ++VFFP + KVG+K IK Y + M  E ++RA++VVQQ +TP A
Sbjct: 55  RTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSA 114

Query: 278 KSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQ 457
           K  L ++ PK  LE F   E+LINI EH LVPEH V+  EE   LLARY L+E+QLPRIQ
Sbjct: 115 KQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQ 174

Query: 458 ITDPIARYYGLKRGQVVKIIRPSETAG 538
             DP+ARY+G+KRGQVVKIIRPSETAG
Sbjct: 175 AGDPVARYFGIKRGQVVKIIRPSETAG 201



 Score = 37.7 bits (86), Expect = 0.024
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +1

Query: 1   MHMLRDRGYLVVEHELSMTRRDFQRKYGEXLPPRGHAHQQVQEERPQRPDLRVL 162
           M +  DRGYLV + EL  T  +F+ ++G+          +  E RP+R DL VL
Sbjct: 18  MQLCHDRGYLVTQDELDQTLEEFKAQFGD----------KPSEGRPRRTDLTVL 61

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>RPB5_PONPY (Q5R587) DNA-directed RNA polymerase II 23 kDa polypeptide (EC|
           2.7.7.6) (RPB25) (RPB5) (RPABC1)
          Length = 210

 Score =  172 bits (435), Expect = 8e-43
 Identities = 85/147 (57%), Positives = 106/147 (72%)
 Frame = +2

Query: 98  REDMLINKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFA 277
           R D+ +     +DP DQ++VFFP + KVG+K IK Y + M  E ++RA++VVQQ +TP A
Sbjct: 55  RTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSA 114

Query: 278 KSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQ 457
           K  L ++ PK  LE F   E+LINI EH LVPEH V+  EE   LLARY L+E QLPRIQ
Sbjct: 115 KQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174

Query: 458 ITDPIARYYGLKRGQVVKIIRPSETAG 538
             DP+ARY+G+KRGQVVKIIRPSETAG
Sbjct: 175 AGDPVARYFGIKRGQVVKIIRPSETAG 201



 Score = 37.7 bits (86), Expect = 0.024
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +1

Query: 1   MHMLRDRGYLVVEHELSMTRRDFQRKYGEXLPPRGHAHQQVQEERPQRPDLRVL 162
           M +  DRGYLV + EL  T  +F+ ++G+          +  E RP+R DL VL
Sbjct: 18  MQLCHDRGYLVTQDELDQTLEEFRAQFGD----------KPSEGRPRRTDLTVL 61

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>RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polypeptide (EC|
           2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4)
          Length = 210

 Score =  172 bits (435), Expect = 8e-43
 Identities = 85/147 (57%), Positives = 106/147 (72%)
 Frame = +2

Query: 98  REDMLINKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFA 277
           R D+ +     +DP DQ++VFFP + KVG+K IK Y + M  E ++RA++VVQQ +TP A
Sbjct: 55  RTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSA 114

Query: 278 KSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQ 457
           K  L ++ PK  LE F   E+LINI EH LVPEH V+  EE   LLARY L+E QLPRIQ
Sbjct: 115 KQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174

Query: 458 ITDPIARYYGLKRGQVVKIIRPSETAG 538
             DP+ARY+G+KRGQVVKIIRPSETAG
Sbjct: 175 AGDPVARYFGIKRGQVVKIIRPSETAG 201



 Score = 37.7 bits (86), Expect = 0.024
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +1

Query: 1   MHMLRDRGYLVVEHELSMTRRDFQRKYGEXLPPRGHAHQQVQEERPQRPDLRVL 162
           M +  DRGYLV + EL  T  +F+ ++G+          +  E RP+R DL VL
Sbjct: 18  MQLCHDRGYLVTQDELDQTLEEFKAQFGD----------KPSEGRPRRTDLTVL 61

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>RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 211

 Score =  171 bits (434), Expect = 1e-42
 Identities = 84/147 (57%), Positives = 108/147 (73%)
 Frame = +2

Query: 98  REDMLINKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFA 277
           R D+ I     +DP DQ++VFFP D K+G+K IK   + M  + +SRAI+VVQ  +TP A
Sbjct: 56  RSDLTILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSA 115

Query: 278 KSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQ 457
           K  + ++ PK  LE F +AE+++NI EH LVPEH V+  EEK  LLARY LK++QLPRIQ
Sbjct: 116 KQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQ 175

Query: 458 ITDPIARYYGLKRGQVVKIIRPSETAG 538
             DP+ARY+GL+RGQVVKIIRPSETAG
Sbjct: 176 QCDPVARYFGLRRGQVVKIIRPSETAG 202



 Score = 34.7 bits (78), Expect = 0.20
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +1

Query: 1   MHMLRDRGYLVVEHELSMTRRDFQRKYGEXLPPRGHAHQQVQEERPQRPDLRVL 162
           + M+ DRGYLV + EL      F+ +YG+          +  E++P R DL +L
Sbjct: 19  LQMVHDRGYLVAQDELDQPLETFKVQYGD----------RPSEKKPARSDLTIL 62

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>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 215

 Score =  117 bits (294), Expect(2) = 7e-30
 Identities = 63/138 (45%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
 Frame = +2

Query: 128 KNDPN-DQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEP 304
           K  PN   ++V F ++  VG+K +K +V  +  +     I + Q  +TP A   L  + P
Sbjct: 70  KKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVAP 129

Query: 305 KIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYY 484
              +E F +  +++NI  H LVP+H  L++EEKK LL RY LKE+QLPRIQ  DP+A Y 
Sbjct: 130 AT-IETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRMDPVALYL 188

Query: 485 GLKRGQVVKIIRPSETAG 538
           GLKRG+VVKIIR SET+G
Sbjct: 189 GLKRGEVVKIIRKSETSG 206



 Score = 32.3 bits (72), Expect(2) = 7e-30
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 7   MLRDRGYLVVEHELSMTRRDFQRKYGEXL 93
           M+RDRGY + + E+ ++  DF+ KY + +
Sbjct: 22  MVRDRGYFITQEEVDLSLEDFKAKYCDSM 50

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>RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 215

 Score =  115 bits (289), Expect(2) = 7e-30
 Identities = 61/130 (46%), Positives = 84/130 (64%)
 Frame = +2

Query: 149 IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQ 328
           ++V F ++  VG+K +K +V  +  ++    I + Q N+TP A   +  + P   +E F 
Sbjct: 78  LWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLVPSIPPAT-IETFH 136

Query: 329 DAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVV 508
           +A +++NI  H LVP+H  L  EEK  LL RY LKE+QLPRIQ  DP+A Y GLKRG+VV
Sbjct: 137 EAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADPVALYLGLKRGEVV 196

Query: 509 KIIRPSETAG 538
           KIIR SETAG
Sbjct: 197 KIIRKSETAG 206



 Score = 34.3 bits (77), Expect(2) = 7e-30
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 7   MLRDRGYLVVEHELSMTRRDFQRKYGEXL 93
           M+RDRGY + + EL +T  DF+ KY + +
Sbjct: 22  MVRDRGYFIAQEELDLTLEDFKVKYCDSM 50

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>RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 215

 Score =  115 bits (287), Expect(2) = 3e-29
 Identities = 59/130 (45%), Positives = 83/130 (63%)
 Frame = +2

Query: 149 IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQ 328
           ++V F ++  VG+K +K +V  +  +     I + Q  +TP A   L    P + +E F 
Sbjct: 78  LWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPAV-IETFP 136

Query: 329 DAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVV 508
           +A +++NI  H LVP+H  L+  EKK LL RY LKE+QLPRIQ  DP+A Y GLKRG+V+
Sbjct: 137 EASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVI 196

Query: 509 KIIRPSETAG 538
           KIIR SET+G
Sbjct: 197 KIIRKSETSG 206



 Score = 32.7 bits (73), Expect(2) = 3e-29
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 7   MLRDRGYLVVEHELSMTRRDFQRKYGEXL 93
           M+RDRGY + + E+ ++  DF+ KY + +
Sbjct: 22  MVRDRGYFITQEEIDLSLEDFKAKYCDSM 50

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>RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 215

 Score =  115 bits (288), Expect(2) = 5e-29
 Identities = 59/130 (45%), Positives = 84/130 (64%)
 Frame = +2

Query: 149 IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQ 328
           ++V F ++  VG+K +K +V  +  +     I + Q  +TP A   L    P + +E F 
Sbjct: 78  LWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPAV-IETFP 136

Query: 329 DAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVV 508
           +A +++NI  H LVP+H  L++ EKK LL RY LKE+QLPRIQ  DP+A Y GLKRG+V+
Sbjct: 137 EASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVI 196

Query: 509 KIIRPSETAG 538
           KIIR SET+G
Sbjct: 197 KIIRKSETSG 206



 Score = 32.0 bits (71), Expect(2) = 5e-29
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 7   MLRDRGYLVVEHELSMTRRDFQRKYGEXL 93
           M+RDRGY + + E+ ++  DF+ KY + +
Sbjct: 22  MVRDRGYFITQEEIDLSLEDFKVKYCDSM 50

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>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 210

 Score =  126 bits (316), Expect = 5e-29
 Identities = 61/137 (44%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
 Frame = +2

Query: 131 NDPND-QIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPK 307
           ND N   IY+ F  +  VG+K ++ +V  +        IL+   ++TP A   +  +  +
Sbjct: 65  NDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQ 124

Query: 308 IHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYG 487
             +E FQ++++++NI  H LVP+H +L+ +EKK LL RY L+ETQLPRIQ+ DP+ARY G
Sbjct: 125 FTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLG 184

Query: 488 LKRGQVVKIIRPSETAG 538
           LKRG+VVKI+R SET+G
Sbjct: 185 LKRGEVVKIVRRSETSG 201

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>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27 kDa|
           polypeptide (EC 2.7.7.6) (ABC27)
          Length = 215

 Score =  116 bits (291), Expect(2) = 6e-29
 Identities = 60/130 (46%), Positives = 86/130 (66%)
 Frame = +2

Query: 149 IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQ 328
           ++V F ++  VG+K +K +V  +  +     I V Q N+TP A   +  + P   +E F 
Sbjct: 78  LWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPAT-IETFN 136

Query: 329 DAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVV 508
           +A +++NI  H LVP+H  L+++EK+ LL RY LKE+QLPRIQ  DP+A Y GLKRG+VV
Sbjct: 137 EAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVV 196

Query: 509 KIIRPSETAG 538
           KIIR SET+G
Sbjct: 197 KIIRKSETSG 206



 Score = 30.4 bits (67), Expect(2) = 6e-29
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 7   MLRDRGYLVVEHELSMTRRDFQRKYGEXL 93
           M++DRGY + + E+ +   DF+ KY + +
Sbjct: 22  MVKDRGYFITQEEVELPLEDFKAKYCDSM 50

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>RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 214

 Score =  117 bits (294), Expect(2) = 2e-28
 Identities = 59/130 (45%), Positives = 87/130 (66%)
 Frame = +2

Query: 149 IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQ 328
           ++V F ++  VG+K ++ +   ++ +  S  I + Q ++TP A   +  + P   +E FQ
Sbjct: 77  LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLIPTVSPA-SIETFQ 135

Query: 329 DAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVV 508
           + ++++NI  H LVP+H  LA +EKK LL RY LKE+QLPRIQ  DP+ RY GLKRG+VV
Sbjct: 136 EGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQREDPVGRYLGLKRGEVV 195

Query: 509 KIIRPSETAG 538
           KIIR SET+G
Sbjct: 196 KIIRRSETSG 205



 Score = 27.3 bits (59), Expect(2) = 2e-28
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 7  MLRDRGYLVVEHELSMTRRDFQRK 78
          M+RDRGY + + E+ M+  +F+ +
Sbjct: 21 MVRDRGYYITQEEIDMSLAEFRSR 44

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>RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 212

 Score =  118 bits (296), Expect(2) = 5e-27
 Identities = 61/130 (46%), Positives = 87/130 (66%)
 Frame = +2

Query: 149 IYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQ 328
           I+V F  +  V +K ++ +   ++  K +  ILV + N+TP A   +  + P   ++ FQ
Sbjct: 75  IWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLIPSVAPAT-IDTFQ 133

Query: 329 DAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVV 508
           + ++L+NI +HVLVP H  L+  EKK LL RY LKE+QLPRIQ  DP+ARY GL+RGQ+V
Sbjct: 134 ETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQREDPVARYLGLRRGQIV 193

Query: 509 KIIRPSETAG 538
           KIIR SET+G
Sbjct: 194 KIIRRSETSG 203



 Score = 21.9 bits (45), Expect(2) = 5e-27
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 7   MLRDRGYLVVEHELSMTRRDFQRKYGEXLPPRG 105
           +++DRGY + + E++++   F +   E   P G
Sbjct: 19  LVKDRGYTITDKEVNLS---FDQFVSEMCDPMG 48

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>RPOH_PYRAB (Q9V116) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 82

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 32/64 (50%), Positives = 45/64 (70%)
 Frame = +2

Query: 347 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 526
           NI +HVLVPEH++L+ EEKK LL +Y +   QLP+I+ +DP  +  G K G +++I R S
Sbjct: 8   NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67

Query: 527 ETAG 538
            TAG
Sbjct: 68  PTAG 71

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>RPOH_PYRHO (O74019) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 82

 Score = 69.3 bits (168), Expect = 7e-12
 Identities = 32/64 (50%), Positives = 45/64 (70%)
 Frame = +2

Query: 347 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 526
           NI +HVLVPEH++L+ EEKK LL +Y +   QLP+I+ +DP  +  G K G +++I R S
Sbjct: 8   NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEIKRRS 67

Query: 527 ETAG 538
            TAG
Sbjct: 68  PTAG 71

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>RPOH_PYRFU (Q8U0M2) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 82

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 33/64 (51%), Positives = 45/64 (70%)
 Frame = +2

Query: 347 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 526
           +I +HVLVPEH+VL+ EEKK LL +Y +   QLP+I+ +DP  +  G K G V++I R S
Sbjct: 8   SIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVKALGAKPGDVIEIKRKS 67

Query: 527 ETAG 538
            TAG
Sbjct: 68  PTAG 71

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>RPOH_PYRKO (Q5JE31) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 82

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 33/69 (47%), Positives = 48/69 (69%)
 Frame = +2

Query: 332 AEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVK 511
           A+   NI +HVLVPEH++L+ EEK+ LL +Y ++ +QLP+I+ +DP     G K G V++
Sbjct: 3   AKKEFNIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIE 62

Query: 512 IIRPSETAG 538
           I R S TAG
Sbjct: 63  IKRKSPTAG 71

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>RPOH_METJA (Q58443) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 78

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 28/65 (43%), Positives = 44/65 (67%)
 Frame = +2

Query: 344 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRP 523
           + + +H+LVP+H+++  EE + +L RY +K  QLP+I   DP+ +  G K G VV++IR 
Sbjct: 1   MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 60

Query: 524 SETAG 538
           S TAG
Sbjct: 61  SPTAG 65

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>RPOH_ARCFU (O28394) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 76

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 31/67 (46%), Positives = 45/67 (67%)
 Frame = +2

Query: 338 MLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKII 517
           M   +++H+LVP+H+VL+ EE + LL    + + QLP+I+  DPIA+  G K G +VKI 
Sbjct: 1   MKFKLQDHMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKIT 60

Query: 518 RPSETAG 538
           R S TAG
Sbjct: 61  RKSLTAG 67

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>RPOH_METTH (O27122) DNA-directed RNA polymerase subunit H (EC 2.7.7.6) (RPB5)|
          Length = 77

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 31/62 (50%), Positives = 39/62 (62%)
 Frame = +2

Query: 350 IKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSE 529
           I +H LVPEH +L   E K +L        QLP+I+ TDP+A+  G KRG +VKIIR S 
Sbjct: 5   ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64

Query: 530 TA 535
           TA
Sbjct: 65  TA 66

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>RPOH_THECE (P31815) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 82

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 31/64 (48%), Positives = 43/64 (67%)
 Frame = +2

Query: 347 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 526
           +I  H LVPEH++L+ EE K LL RY ++ +QLP+I+ +DP     G K G V++I R S
Sbjct: 8   DIFAHELVPEHRILSEEETKELLRRYRIQISQLPQIKASDPAVVALGAKPGDVLEIKRKS 67

Query: 527 ETAG 538
            TAG
Sbjct: 68  RTAG 71

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>RPOH_METMA (Q8PUQ8) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 78

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 25/64 (39%), Positives = 46/64 (71%)
 Frame = +2

Query: 347 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 526
           ++ +H  VP+H++++  E K++L++Y +++ QLP+I++ DP+ +  G   G VVKI R S
Sbjct: 5   SLLDHEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKITRKS 64

Query: 527 ETAG 538
           +TAG
Sbjct: 65  QTAG 68

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>RPOH_METAC (Q8TRB4) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 78

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 24/64 (37%), Positives = 47/64 (73%)
 Frame = +2

Query: 347 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 526
           ++ +H  VP+H++++  E K++L++Y +++ QLP+I++ DP+++  G   G VV+I R S
Sbjct: 5   SLLDHESVPKHEIISEGELKSVLSKYLIEKEQLPKIKVQDPVSKEIGAVVGDVVRITRKS 64

Query: 527 ETAG 538
           +TAG
Sbjct: 65  QTAG 68

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>RPOH_METVA (P41559) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 78

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 41/65 (63%)
 Frame = +2

Query: 344 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRP 523
           + +  H +VPEH+++  +E   LL +Y +K  Q P++ I+DP+    G K G +VKI R 
Sbjct: 1   MKVSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPLVIEVGAKVGDIVKITRK 60

Query: 524 SETAG 538
           S+TAG
Sbjct: 61  SQTAG 65

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>RPOH_SULTO (Q976A3) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 84

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 28/69 (40%), Positives = 44/69 (63%)
 Frame = +2

Query: 332 AEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVK 511
           +++ I+  +H LVP+H+VL+ EE   +L    +K  QLP I+ +DPIA+  G K G ++K
Sbjct: 5   SKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIK 64

Query: 512 IIRPSETAG 538
           I R S  +G
Sbjct: 65  ITRKSSLSG 73

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>RPOH_AERPE (Q9YAT3) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 90

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 29/63 (46%), Positives = 39/63 (61%)
 Frame = +2

Query: 350 IKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSE 529
           I EH  VPEH++L+ EE   +L    +K  QLP+I + DPIAR    K G +++I R S 
Sbjct: 12  ILEHEYVPEHRLLSIEEAVQVLKMLGIKPWQLPKISVNDPIARLLKAKPGDIIEITRRSY 71

Query: 530 TAG 538
           TAG
Sbjct: 72  TAG 74

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>RPOH_METMP (P61519) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 78

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 27/65 (41%), Positives = 38/65 (58%)
 Frame = +2

Query: 344 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRP 523
           + I  H +VP H+++  EE   LL +Y++K  Q P++  TDP+    G   G VVKI R 
Sbjct: 1   MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRM 60

Query: 524 SETAG 538
           S TAG
Sbjct: 61  SPTAG 65

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>RPOH_SULAC (P11521) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 84

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 27/65 (41%), Positives = 39/65 (60%)
 Frame = +2

Query: 344 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRP 523
           I+I  H LVP+H++L  EE   L+    +K  QLP I+ +DP+A+  G K G ++KI R 
Sbjct: 9   IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRK 68

Query: 524 SETAG 538
           S   G
Sbjct: 69  SPFTG 73

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>RPO5_MIMIV (Q5UPX7) DNA-directed RNA polymerase subunit 5 (EC 2.7.7.6)|
          Length = 205

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 24/74 (32%), Positives = 44/74 (59%)
 Frame = +2

Query: 317 EVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKR 496
           ++F++ E L ++  +   P  Q+L+  E +++   Y      L +I  +DPI RY+ LK+
Sbjct: 123 QIFKEHEFLADLLSNEFQPRFQLLSPSEMESVKTEYNANPYTLKKIVRSDPIVRYFALKK 182

Query: 497 GQVVKIIRPSETAG 538
             +++IIRPS T+G
Sbjct: 183 NDIIRIIRPSATSG 196

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>RPOH_THEVO (Q979F2) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 87

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
 Frame = +2

Query: 347 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPI-----ARYYGLKRGQVVK 511
           N+ +H LVPEH +++ EE+KT+L    +++  LPRI   DP+     A +  +K G V+K
Sbjct: 5   NVLDHNLVPEHHIVSEEEEKTILKELGIEKEFLPRISPNDPVIKALEAIHGKIKDGTVIK 64

Query: 512 IIRPSETAG 538
           IIR S T G
Sbjct: 65  IIRNSPTMG 73

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>RPOH_PYRAE (Q8ZYR0) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 75

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 28/57 (49%), Positives = 36/57 (63%)
 Frame = +2

Query: 368 VPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 538
           V E  V+  EE K LL R  L+  QLP I+ +DP+A+  G K G V+KI+R S TAG
Sbjct: 8   VKEVTVIPREEAKELLKRMKLRPWQLPWIRASDPLAQKAGAKPGDVLKIVRESPTAG 64

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>RPOH_SULSO (Q980Q9) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 84

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 25/65 (38%), Positives = 40/65 (61%)
 Frame = +2

Query: 344 INIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRP 523
           I+ + H LVP+H+VL  +E   +L    ++  QLP I+ +DP+AR    K G +++IIR 
Sbjct: 9   IDPRIHYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRK 68

Query: 524 SETAG 538
           S+  G
Sbjct: 69  SQLYG 73

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>RPOH_THEAC (Q03588) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 87

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
 Frame = +2

Query: 347 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPI-----ARYYGLKRGQVVK 511
           N+ +H LVPEH ++  EE+K +L    +++  LP+I   DP      A +  +K G ++K
Sbjct: 5   NVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKIKEGTIIK 64

Query: 512 IIRPSETAG 538
           I+R S T G
Sbjct: 65  IVRKSPTMG 73

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>RPOH_HALSA (P15740) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 75

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = +2

Query: 341 LINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIR 520
           ++++ +H LVPEH VL  E    +LA Y +  T+LP+I+  DP A     + G VV+I+R
Sbjct: 1   MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP-ALPDNAEIGDVVEIVR 59

Query: 521 PSET 532
            S T
Sbjct: 60  DSRT 63

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>RPOH_METKA (Q8TXI5) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 92

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
 Frame = +2

Query: 329 DAEMLINIKEHVLVPEHQVLANEEK-KTLLARYTLKETQLPRIQITDPIARYYG------ 487
           D ++++N   HVLVP+H+V+ +EE+ + +L    +++  LPRI   DP+           
Sbjct: 6   DPDVVLN---HVLVPKHEVIDDEEEIEKILEELGVEKDDLPRIHTNDPVVVALSEKLGKR 62

Query: 488 LKRGQVVKIIRPSETAG 538
           +K G +VKI+R S TAG
Sbjct: 63  IKPGSLVKIVRDSPTAG 79

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>SMRCD_MOUSE (Q04692) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily A containing DEAD/H box 1 (EC
            3.6.1.-) (ATP-dependent helicase SMARCAD1) (Enhancer trap
            locus homolog 1) (Etl-1)
          Length = 1021

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
 Frame = +2

Query: 113  INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNA----EKVSRAILVVQQNLTPFAK 280
            I  C  ++  +Q+Y    N  K  + +++K  EM N      K++   L+ +Q  TP   
Sbjct: 733  IELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQYYTPEKL 792

Query: 281  SFLQELEPK--IHLE-----VFQDAEMLINIKEHVLVPEHQ 382
              + +L  K   H E     +F+D E++ + + HVL  ++Q
Sbjct: 793  KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQ 833

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>RBP1_HUMAN (Q15311) RalA-binding protein 1 (RalBP1) (Ral-interacting protein|
           1) (76-kDa Ral-interacting protein) (Dinitrophenyl
           S-glutathione ATPase) (DNP-SG ATPase)
          Length = 654

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = +1

Query: 37  EHELSMTRRDFQRKYGEXLPPRGHAHQQVQEERPQ----RPDLRVLPQRREGGDEAHQEV 204
           E EL +   D QR+  E      H +Q + EER      R  LR+L  +R   ++  QE 
Sbjct: 548 EEELQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIELRVQLRLLQMQRAKAEQQAQE- 606

Query: 205 R*NDERRESLKGYIGCATEPHPICEIVPPRTGAKDPLGG 321
              DE  E    + G A +P P   ++ P+   + P  G
Sbjct: 607 ---DEEPE----WRGGAVQP-PRDGVLEPKAAKEQPKAG 637

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>SMRCD_HUMAN (Q9H4L7) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily A containing DEAD/H box 1 (EC
            3.6.1.-) (ATP-dependent helicase 1) (hHEL1)
          Length = 1026

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
 Frame = +2

Query: 113  INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNA----EKVSRAILVVQQNLTPFAK 280
            I  C  ++  +Q+Y+   N  K  + +++K  EM N      K++   L+ +Q  T    
Sbjct: 738  IELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKL 797

Query: 281  SFLQELEPK--IHLE-----VFQDAEMLINIKEHVLVPEHQVLAN 394
              + +L  K   H E     +F+D E++ + + HVL  +++ + N
Sbjct: 798  KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 842

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>CD36_MESAU (P70110) Platelet glycoprotein 4 (Platelet glycoprotein IV) (GPIV)|
           (GPIIIB) (CD36 antigen) (PAS IV) (PAS-4 protein)
          Length = 471

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 21/87 (24%), Positives = 41/87 (47%)
 Frame = +2

Query: 113 INKCKKNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQ 292
           I+KCK+  P   +Y+  P+        I + +E +N  +      +  + +T F   F +
Sbjct: 329 ISKCKQGRP---VYISLPHFLHAS-PDISEPIEGLNPNEEEHRTYLDVEPITGFTLQFAK 384

Query: 293 ELEPKIHLEVFQDAEMLINIKEHVLVP 373
            L+  I ++  +  E L N+K + +VP
Sbjct: 385 RLQVNILVKPARKIEALKNLKRNYIVP 411

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>RBP1_MOUSE (Q62172) RalA-binding protein 1 (RalBP1) (Ral-interacting protein|
           1) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase)
          Length = 647

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +1

Query: 37  EHELSMTRRDFQRKYGEXLPPRGHAHQQVQEERPQ----RPDLRVLPQRREGGDEAHQE 201
           E EL +   D QR+  E      H +Q V EER      R  LR+L  +R   ++  QE
Sbjct: 548 EEELQLILEDLQRQNEELEIKNNHLNQAVHEEREAIIELRVQLRLLQMQRAKSEQQPQE 606

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>VE2_HPV5B (P26545) Regulatory protein E2|
          Length = 514

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -1

Query: 227 SRRSSFQRTS*CASSPPSRRWGRTR----KSGRWGRSSCTC**ACPRGGRXSPYLRWKSR 60
           SR  S   T+   +   S   G+TR    +S   GRS  TC     RGG  SP  R +S 
Sbjct: 280 SRSKSQTHTTWSTTRSRSTSVGKTRALTSRSRSRGRSPSTC----RRGGGRSPRRRSRSP 335

Query: 59  RVMDSSCSTTRYPRSRS 9
               SSC+T R  R+R+
Sbjct: 336 STY-SSCTTQRSQRARA 351

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>GLMU_NITOC (Q3J6N3) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 453

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +2

Query: 194 IKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVP 373
           + K +E  +A    R I  V   +T     +L+++ PK+     Q    L +I EH +  
Sbjct: 147 VSKIIEEADASPEQRRIREVNTGITAIEARYLKQIAPKLSNNNAQGEYYLTDIIEHAVAS 206

Query: 374 EHQVLA 391
             +V+A
Sbjct: 207 GEKVVA 212

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>GLNE_VIBVY (Q7MNY4) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 950

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
 Frame = +2

Query: 218 NAEKVSRAIL-----VVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQ 382
           NA  +S  I+     + ++ L P  +  L  L PK+   +F DA+    +   VL   H 
Sbjct: 478 NAATMSEQIIQFKADLAKKTLGPRGREVLNRLMPKLFSAIFADADAQFGL-PRVLHLLHN 536

Query: 383 VLANEEKKTLLARYTLKETQLPRI-----QITDPIARY 481
           +        LL  +    TQL R+      I++ +ARY
Sbjct: 537 IATRTTYLELLDEHPAALTQLVRLCTASPMISEQLARY 574

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>GLNE_VIBVU (Q8DEH6) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 950

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
 Frame = +2

Query: 218 NAEKVSRAIL-----VVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLINIKEHVLVPEHQ 382
           NA  +S  I+     + ++ L P  +  L  L PK+   +F DA+    +   VL   H 
Sbjct: 478 NAATMSEQIIQFKADLAKKTLGPRGREVLNRLMPKLFSAIFADADAQFGL-PRVLHLLHN 536

Query: 383 VLANEEKKTLLARYTLKETQLPRI-----QITDPIARY 481
           +        LL  +    TQL R+      I++ +ARY
Sbjct: 537 IATRTTYLELLDEHPAALTQLVRLCTASPMISEQLARY 574

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>UPP_SULTO (Q975Z7) Probable uracil phosphoribosyltransferase (EC 2.4.2.9)|
           (UMP pyrophosphorylase) (UPRTase)
          Length = 216

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +2

Query: 305 KIHLEVFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYY 484
           ++ +E+F +    INIK++V++ +  +        L A   +K+ +  RI I   I   Y
Sbjct: 117 EMEVEIFYNKIPEINIKDNVIIADPMIAT--ASTMLKALNIIKDKKPKRIFIVSIIISEY 174

Query: 485 GLKR 496
           GLKR
Sbjct: 175 GLKR 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,153,338
Number of Sequences: 219361
Number of extensions: 1623169
Number of successful extensions: 5517
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 5286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5502
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result