ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags12e11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK062181.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D09, full insert sequence Length = 1080 Score = 299 bits (151), Expect = 5e-78 Identities = 301/351 (85%) Strand = Plus / Plus Query: 195 aaggagctaaccgtatctactctctcaagcctcatatgtgattctgaacattctgttcag 254 ||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||| ||| Sbjct: 1 aaggaactaactttatctactctttcaagcctcatatgtgattctgaacattttgtccag 60 Query: 255 gaacagaccttggcgctggtacagaatcttcttgatggatatgtggactctgttaactac 314 ||||| || ||||| ||||| || |||||| |||||||||||||| ||||| |||| || Sbjct: 61 gaacaaactttggcactggtgcacaatcttgttgatggatatgtgaactcttttaattat 120 Query: 315 gtcattggtgaagatggcatggttataaatgcaatctcaagacaattgaacagtgcatct 374 ||||||||||||||||||||| || ||||||| || ||||||||| |||| | |||| || Sbjct: 121 gtcattggtgaagatggcatgattttaaatgctatttcaagacaactgaataatgcacct 180 Query: 375 gccacaggagtttgcatccagggtatgttggtgcttgcaaatatggcagctggggatgaa 434 ||| ||||||| ||||| ||||||||||| |||||||||||| | |||||||||| ||| Sbjct: 181 gccccaggagtatgcatacagggtatgtttgtgcttgcaaatgttgcagctgggggcgaa 240 Query: 435 ttaaacaaggaagctgtaatggatgttactgttcctcaccgagcagatcgcatgaaacca 494 ||||||||||| ||||| ||| || || ||| |||| ||||||||||| | |||| | Sbjct: 241 ttaaacaaggaggctgtgatgaatattcttgtacctcgtcgagcagatcgtgtcaaacaa 300 Query: 495 tcttttgtggtcaactttctgcagagcaaggataaacaattgagagttgca 545 |||||| | || |||||||||| ||||||||| |||||||||||||||||| Sbjct: 301 tcttttatagttaactttctgctgagcaaggacaaacaattgagagttgca 351
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 242 bits (122), Expect = 1e-60 Identities = 207/234 (88%), Gaps = 1/234 (0%) Strand = Plus / Plus Query: 1 tgctgccctgggtgctatttgcaacattgcagtgaatttaacacccaggnaaatcagttc 60 ||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||| ||| Sbjct: 16870 tgctgcccttggtgctatttgcaatattgctgtgaatttaacacccagg-aaatcgattc 16928 Query: 61 ttcttcattctggggtcgtctcccaacttgttcatttatcaaagtcgatggatccagcat 120 ||||||| ||||||| |||||||| ||||||||||| || ||||| ||||||||| ||| Sbjct: 16929 ttcttcaatctggggctgtctcccagcttgttcatttgtccaagtctatggatccaacat 16988 Query: 121 tgagactaaaatctgtgttggctcttaggaatattatgttccttatgaaaccgaaggata 180 ||||| ||||| |||||| ||||||||||||||||||||||||| |||| || ||||||| Sbjct: 16989 tgagattaaaagctgtgtgggctcttaggaatattatgttccttttgaatccaaaggata 17048 Query: 181 aagacctcattctgaaggagctaaccgtatctactctctcaagcctcatatgtg 234 ||||| | ||||| ||||| ||||| |||||||||| |||||||||||||||| Sbjct: 17049 aagactttattctcaaggaactaactttatctactctttcaagcctcatatgtg 17102 Score = 141 bits (71), Expect = 3e-30 Identities = 140/163 (85%) Strand = Plus / Plus Query: 234 gattctgaacattctgttcaggaacagaccttggcgctggtacagaatcttcttgatgga 293 ||||||||||||| ||| |||||||| || ||||| ||||| || |||||| |||||||| Sbjct: 17177 gattctgaacattttgtccaggaacaaactttggcactggtgcacaatcttgttgatgga 17236 Query: 294 tatgtggactctgttaactacgtcattggtgaagatggcatggttataaatgcaatctca 353 |||||| ||||| |||| || ||||||||||||||||||||| || ||||||| || ||| Sbjct: 17237 tatgtgaactcttttaattatgtcattggtgaagatggcatgattttaaatgctatttca 17296 Query: 354 agacaattgaacagtgcatctgccacaggagtttgcatccagg 396 |||||| |||| | |||| ||||| ||||||| ||||| |||| Sbjct: 17297 agacaactgaataatgcacctgccccaggagtatgcatacagg 17339 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Plus Query: 393 cagggtatgttggtgcttgcaaatatggcagctggggatgaattaaacaaggaagctgta 452 ||||||||||| |||||| ||||| | |||| ||| | ||||||||||||| | ||||| Sbjct: 27740 cagggtatgtttgtgcttacaaatgttgcagttggtggtgaattaaacaagaaggctgtg 27799 Query: 453 atggatgttactgttcctcaccgagcagatcgcatgaaaccatcttttgtggtcaacttt 512 ||| ||||| ||| ||||| ||||||||||| | ||||||||||||||||| |||||| Sbjct: 27800 atgaatgttcttgtacctcatcgagcagatcgtgtcaaaccatcttttgtggttaacttt 27859 Query: 513 ctgcagagcaaggataaacaattgagagttgca 545 ||||||||||||||| |||||||| |||||||| Sbjct: 27860 ctgcagagcaaggattaacaattgtgagttgca 27892 Score = 121 bits (61), Expect = 3e-24 Identities = 130/153 (84%) Strand = Plus / Plus Query: 393 cagggtatgttggtgcttgcaaatatggcagctggggatgaattaaacaaggaagctgta 452 ||||||||||| |||||||||||| | |||||||||| |||||||||||||| ||||| Sbjct: 17498 cagggtatgtttgtgcttgcaaatgttgcagctgggggcgaattaaacaaggaggctgtg 17557 Query: 453 atggatgttactgttcctcaccgagcagatcgcatgaaaccatcttttgtggtcaacttt 512 ||| || || ||| |||| ||||||||||| | |||| ||||||| | || |||||| Sbjct: 17558 atgaatattcttgtacctcgtcgagcagatcgtgtcaaacaatcttttatagttaacttt 17617 Query: 513 ctgcagagcaaggataaacaattgagagttgca 545 |||| ||||||||| |||||||||||||||||| Sbjct: 17618 ctgctgagcaaggacaaacaattgagagttgca 17650 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 286 ttgatggatatgtggactctgttaactacgtcattggtgaagatggcatggttataaatg 345 |||| |||||||||||| | |||| || || |||||||||||||||||| || |||||| Sbjct: 27399 ttgaaggatatgtggacaccattaattatgttattggtgaagatggcatgattttaaatg 27458 Query: 346 caatctcaagaca 358 | || |||||||| Sbjct: 27459 ctatttcaagaca 27471
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 242 bits (122), Expect = 1e-60 Identities = 207/234 (88%), Gaps = 1/234 (0%) Strand = Plus / Minus Query: 1 tgctgccctgggtgctatttgcaacattgcagtgaatttaacacccaggnaaatcagttc 60 ||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||| ||| Sbjct: 24392119 tgctgcccttggtgctatttgcaatattgctgtgaatttaacacccagg-aaatcgattc 24392061 Query: 61 ttcttcattctggggtcgtctcccaacttgttcatttatcaaagtcgatggatccagcat 120 ||||||| ||||||| |||||||| ||||||||||| || ||||| ||||||||| ||| Sbjct: 24392060 ttcttcaatctggggctgtctcccagcttgttcatttgtccaagtctatggatccaacat 24392001 Query: 121 tgagactaaaatctgtgttggctcttaggaatattatgttccttatgaaaccgaaggata 180 ||||| ||||| |||||| ||||||||||||||||||||||||| |||| || ||||||| Sbjct: 24392000 tgagattaaaagctgtgtgggctcttaggaatattatgttccttttgaatccaaaggata 24391941 Query: 181 aagacctcattctgaaggagctaaccgtatctactctctcaagcctcatatgtg 234 ||||| | ||||| ||||| ||||| |||||||||| |||||||||||||||| Sbjct: 24391940 aagactttattctcaaggaactaactttatctactctttcaagcctcatatgtg 24391887 Score = 141 bits (71), Expect = 3e-30 Identities = 140/163 (85%) Strand = Plus / Minus Query: 234 gattctgaacattctgttcaggaacagaccttggcgctggtacagaatcttcttgatgga 293 ||||||||||||| ||| |||||||| || ||||| ||||| || |||||| |||||||| Sbjct: 24391812 gattctgaacattttgtccaggaacaaactttggcactggtgcacaatcttgttgatgga 24391753 Query: 294 tatgtggactctgttaactacgtcattggtgaagatggcatggttataaatgcaatctca 353 |||||| ||||| |||| || ||||||||||||||||||||| || ||||||| || ||| Sbjct: 24391752 tatgtgaactcttttaattatgtcattggtgaagatggcatgattttaaatgctatttca 24391693 Query: 354 agacaattgaacagtgcatctgccacaggagtttgcatccagg 396 |||||| |||| | |||| ||||| ||||||| ||||| |||| Sbjct: 24391692 agacaactgaataatgcacctgccccaggagtatgcatacagg 24391650 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 393 cagggtatgttggtgcttgcaaatatggcagctggggatgaattaaacaaggaagctgta 452 ||||||||||| |||||| ||||| | |||| ||| | ||||||||||||| | ||||| Sbjct: 24381249 cagggtatgtttgtgcttacaaatgttgcagttggtggtgaattaaacaagaaggctgtg 24381190 Query: 453 atggatgttactgttcctcaccgagcagatcgcatgaaaccatcttttgtggtcaacttt 512 ||| ||||| ||| ||||| ||||||||||| | ||||||||||||||||| |||||| Sbjct: 24381189 atgaatgttcttgtacctcatcgagcagatcgtgtcaaaccatcttttgtggttaacttt 24381130 Query: 513 ctgcagagcaaggataaacaattgagagttgca 545 ||||||||||||||| |||||||| |||||||| Sbjct: 24381129 ctgcagagcaaggattaacaattgtgagttgca 24381097 Score = 121 bits (61), Expect = 3e-24 Identities = 130/153 (84%) Strand = Plus / Minus Query: 393 cagggtatgttggtgcttgcaaatatggcagctggggatgaattaaacaaggaagctgta 452 ||||||||||| |||||||||||| | |||||||||| |||||||||||||| ||||| Sbjct: 24391491 cagggtatgtttgtgcttgcaaatgttgcagctgggggcgaattaaacaaggaggctgtg 24391432 Query: 453 atggatgttactgttcctcaccgagcagatcgcatgaaaccatcttttgtggtcaacttt 512 ||| || || ||| |||| ||||||||||| | |||| ||||||| | || |||||| Sbjct: 24391431 atgaatattcttgtacctcgtcgagcagatcgtgtcaaacaatcttttatagttaacttt 24391372 Query: 513 ctgcagagcaaggataaacaattgagagttgca 545 |||| ||||||||| |||||||||||||||||| Sbjct: 24391371 ctgctgagcaaggacaaacaattgagagttgca 24391339 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 286 ttgatggatatgtggactctgttaactacgtcattggtgaagatggcatggttataaatg 345 |||| |||||||||||| | |||| || || |||||||||||||||||| || |||||| Sbjct: 24381590 ttgaaggatatgtggacaccattaattatgttattggtgaagatggcatgattttaaatg 24381531 Query: 346 caatctcaagaca 358 | || |||||||| Sbjct: 24381530 ctatttcaagaca 24381518
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 242 bits (122), Expect = 1e-60 Identities = 207/234 (88%), Gaps = 1/234 (0%) Strand = Plus / Minus Query: 1 tgctgccctgggtgctatttgcaacattgcagtgaatttaacacccaggnaaatcagttc 60 ||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||| ||| Sbjct: 24703788 tgctgcccttggtgctatttgcaatattgctgtgaatttaacacccagg-aaatcgattc 24703730 Query: 61 ttcttcattctggggtcgtctcccaacttgttcatttatcaaagtcgatggatccagcat 120 ||||||| ||||||| |||||||| ||||||||||| || ||||| ||||||||| ||| Sbjct: 24703729 ttcttcaatctggggctgtctcccagcttgttcatttgtccaagtctatggatccaacat 24703670 Query: 121 tgagactaaaatctgtgttggctcttaggaatattatgttccttatgaaaccgaaggata 180 ||||| ||||| |||||| ||||||||||||||||||||||||| |||| || ||||||| Sbjct: 24703669 tgagattaaaagctgtgtgggctcttaggaatattatgttccttttgaatccaaaggata 24703610 Query: 181 aagacctcattctgaaggagctaaccgtatctactctctcaagcctcatatgtg 234 ||||| | ||||| ||||| ||||| |||||||||| |||||||||||||||| Sbjct: 24703609 aagactttattctcaaggaactaactttatctactctttcaagcctcatatgtg 24703556 Score = 141 bits (71), Expect = 3e-30 Identities = 140/163 (85%) Strand = Plus / Minus Query: 234 gattctgaacattctgttcaggaacagaccttggcgctggtacagaatcttcttgatgga 293 ||||||||||||| ||| |||||||| || ||||| ||||| || |||||| |||||||| Sbjct: 24703481 gattctgaacattttgtccaggaacaaactttggcactggtgcacaatcttgttgatgga 24703422 Query: 294 tatgtggactctgttaactacgtcattggtgaagatggcatggttataaatgcaatctca 353 |||||| ||||| |||| || ||||||||||||||||||||| || ||||||| || ||| Sbjct: 24703421 tatgtgaactcttttaattatgtcattggtgaagatggcatgattttaaatgctatttca 24703362 Query: 354 agacaattgaacagtgcatctgccacaggagtttgcatccagg 396 |||||| |||| | |||| ||||| ||||||| ||||| |||| Sbjct: 24703361 agacaactgaataatgcacctgccccaggagtatgcatacagg 24703319 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 393 cagggtatgttggtgcttgcaaatatggcagctggggatgaattaaacaaggaagctgta 452 ||||||||||| |||||| ||||| | |||| ||| | ||||||||||||| | ||||| Sbjct: 24692918 cagggtatgtttgtgcttacaaatgttgcagttggtggtgaattaaacaagaaggctgtg 24692859 Query: 453 atggatgttactgttcctcaccgagcagatcgcatgaaaccatcttttgtggtcaacttt 512 ||| ||||| ||| ||||| ||||||||||| | ||||||||||||||||| |||||| Sbjct: 24692858 atgaatgttcttgtacctcatcgagcagatcgtgtcaaaccatcttttgtggttaacttt 24692799 Query: 513 ctgcagagcaaggataaacaattgagagttgca 545 ||||||||||||||| |||||||| |||||||| Sbjct: 24692798 ctgcagagcaaggattaacaattgtgagttgca 24692766 Score = 121 bits (61), Expect = 3e-24 Identities = 130/153 (84%) Strand = Plus / Minus Query: 393 cagggtatgttggtgcttgcaaatatggcagctggggatgaattaaacaaggaagctgta 452 ||||||||||| |||||||||||| | |||||||||| |||||||||||||| ||||| Sbjct: 24703160 cagggtatgtttgtgcttgcaaatgttgcagctgggggcgaattaaacaaggaggctgtg 24703101 Query: 453 atggatgttactgttcctcaccgagcagatcgcatgaaaccatcttttgtggtcaacttt 512 ||| || || ||| |||| ||||||||||| | |||| ||||||| | || |||||| Sbjct: 24703100 atgaatattcttgtacctcgtcgagcagatcgtgtcaaacaatcttttatagttaacttt 24703041 Query: 513 ctgcagagcaaggataaacaattgagagttgca 545 |||| ||||||||| |||||||||||||||||| Sbjct: 24703040 ctgctgagcaaggacaaacaattgagagttgca 24703008 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 286 ttgatggatatgtggactctgttaactacgtcattggtgaagatggcatggttataaatg 345 |||| |||||||||||| | |||| || || |||||||||||||||||| || |||||| Sbjct: 24693259 ttgaaggatatgtggacaccattaattatgttattggtgaagatggcatgattttaaatg 24693200 Query: 346 caatctcaagaca 358 | || |||||||| Sbjct: 24693199 ctatttcaagaca 24693187
>emb|BX571869.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 11/17 Length = 349284 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 tgtgattctgaacattctgttcag 254 |||||||||||| ||||||||||| Sbjct: 283230 tgtgattctgaatattctgttcag 283253
>emb|AL672160.11| Mouse DNA sequence from clone RP23-144K18 on chromosome 4, complete sequence Length = 146373 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 atatgtgattctgaacattctgtt 251 |||||||| ||||||||||||||| Sbjct: 84994 atatgtgactctgaacattctgtt 84971
>emb|AL663110.6| Mouse DNA sequence from clone RP23-224P22 on chromosome 11 Contains part of the Abca13 gene for ATP-binding cassette sub-family A (ABC1) member 13, complete sequence Length = 158039 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 ctgtaatggatgttactgtt 467 |||||||||||||||||||| Sbjct: 25173 ctgtaatggatgttactgtt 25192
>gb|S55518.1| Saccharomyces cerevisiae RF1095, RF435, and inner membrane protease 1 (PET2858) genes, complete cds Length = 2657 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ttgcagtgaatttaacaccc 46 |||||||||||||||||||| Sbjct: 1566 ttgcagtgaatttaacaccc 1547
>gb|AY108295.1| Zea mays PCO087284 mRNA sequence Length = 1825 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 ttcctcaccgagcagatcgc 485 |||||||||||||||||||| Sbjct: 455 ttcctcaccgagcagatcgc 474
>emb|BX649405.13| Zebrafish DNA sequence from clone DKEY-190M16 in linkage group 1, complete sequence Length = 231915 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 aatgcaatctcaagacaatt 361 |||||||||||||||||||| Sbjct: 143463 aatgcaatctcaagacaatt 143482
>emb|BX255964.5| Mouse DNA sequence from clone RP24-550A20 on chromosome 4, complete sequence Length = 78485 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 atatgtgattctgaacattctgtt 251 |||||||| ||||||||||||||| Sbjct: 72222 atatgtgactctgaacattctgtt 72199
>emb|BX005261.8| Zebrafish DNA sequence from clone DKEY-20I6 in linkage group 1, complete sequence Length = 228767 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 aatgcaatctcaagacaatt 361 |||||||||||||||||||| Sbjct: 80968 aatgcaatctcaagacaatt 80987
>emb|AL683876.5| Mouse DNA sequence from clone RP23-100E6 on chromosome 2, complete sequence Length = 207486 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 ataaagacctcattctgaaggagc 201 |||||||||||||||||| ||||| Sbjct: 205079 ataaagacctcattctgagggagc 205056 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,169,742 Number of Sequences: 3902068 Number of extensions: 5169742 Number of successful extensions: 93909 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93829 Number of HSP's gapped (non-prelim): 77 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
