| Clone Name | bags12e07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474251.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 930 Score = 281 bits (142), Expect = 1e-72 Identities = 315/373 (84%), Gaps = 6/373 (1%) Strand = Plus / Plus Query: 113 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccat 172 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 316 acacgcatgtgcaccaagtataacactgcagaaggctgcaaatttggtgacaagtgccat 375 Query: 173 ttcgcccatggtgagagggagcttggcaggccaccatcctcctacatgtcccaggaaagt 232 |||||||||||||||||||| ||||||| |||| | | |||||||||| || ||| Sbjct: 376 ttcgcccatggtgagagggaacttggcaagccagctt------acatgtcccatgagagt 429 Query: 233 tcctacgcacctcctacgggtggtcgatatggaggtcgacacgaaccacctcctccagct 292 || || ||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct: 430 gccatggctcctcctatgggtggtcgatatggaggccgacctgaaccacctccaccagcc 489 Query: 293 tcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagtgtcgat 352 | ||||| |||||||| ||||||||||| || || |||| |||| |||| || ||| Sbjct: 490 gctatgggtcctccagcaggaaactttggtgcatctgctactgccaagatcagcgttgat 549 Query: 353 gccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatctgccgt 412 ||| | || || || |||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 550 gcctcgcttgctggtggcataattgggaagggtggagtcaacacgaagcagatatgccga 609 Query: 413 gtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaagaacatt 472 || || |||||||||||||| ||||| ||||| |||||| | || || ||||||||||| Sbjct: 610 gtaactggggtcaagctctcaatacgtgaccatgaatcagattcaaacctgaagaacatt 669 Query: 473 gagctcgaaggca 485 ||||||||||||| Sbjct: 670 gagctcgaaggca 682 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 1 gcactttgtccctggtgggtaccaggcagtatcaaaatcacacaacctaggccatgctgc 60 ||||||||||||||||||||| || |||||| ||||| ||| ||| |||||| | | || Sbjct: 183 gcactttgtccctggtgggtatcaagcagtagcaaaaacactcaatctaggcaacccagc 242 Query: 61 tgtgtctgcaccgtcaagaactcctgcagatcatgctgct 100 |||| |||||||| ||||| ||||| |||||||||||| Sbjct: 243 tgtgcctgcaccggcaagagctcctatggatcatgctgct 282
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 281 bits (142), Expect = 1e-72 Identities = 315/373 (84%), Gaps = 6/373 (1%) Strand = Plus / Plus Query: 113 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccat 172 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 70010 acacgcatgtgcaccaagtataacactgcagaaggctgcaaatttggtgacaagtgccat 70069 Query: 173 ttcgcccatggtgagagggagcttggcaggccaccatcctcctacatgtcccaggaaagt 232 |||||||||||||||||||| ||||||| |||| | | |||||||||| || ||| Sbjct: 70070 ttcgcccatggtgagagggaacttggcaagccagctt------acatgtcccatgagagt 70123 Query: 233 tcctacgcacctcctacgggtggtcgatatggaggtcgacacgaaccacctcctccagct 292 || || ||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct: 70124 gccatggctcctcctatgggtggtcgatatggaggccgacctgaaccacctccaccagcc 70183 Query: 293 tcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagtgtcgat 352 | ||||| |||||||| ||||||||||| || || |||| |||| |||| || ||| Sbjct: 70184 gctatgggtcctccagcaggaaactttggtgcatctgctactgccaagatcagcgttgat 70243 Query: 353 gccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatctgccgt 412 ||| | || || || |||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 70244 gcctcgcttgctggtggcataattgggaagggtggagtcaacacgaagcagatatgccga 70303 Query: 413 gtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaagaacatt 472 || || |||||||||||||| ||||| ||||| |||||| | || || ||||||||||| Sbjct: 70304 gtaactggggtcaagctctcaatacgtgaccatgaatcagattcaaacctgaagaacatt 70363 Query: 473 gagctcgaaggca 485 ||||||||||||| Sbjct: 70364 gagctcgaaggca 70376 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 1 gcactttgtccctggtgggtaccaggcagtatcaaaatcacacaacctaggccatgctgc 60 ||||||||||||||||||||| || |||||| ||||| ||| ||| |||||| | | || Sbjct: 69877 gcactttgtccctggtgggtatcaagcagtagcaaaaacactcaatctaggcaacccagc 69936 Query: 61 tgtgtctgcaccgtcaagaactcctgcagatcatgctgct 100 |||| |||||||| ||||| ||||| |||||||||||| Sbjct: 69937 tgtgcctgcaccggcaagagctcctatggatcatgctgct 69976
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 281 bits (142), Expect = 1e-72 Identities = 315/373 (84%), Gaps = 6/373 (1%) Strand = Plus / Plus Query: 113 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccat 172 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 34019114 acacgcatgtgcaccaagtataacactgcagaaggctgcaaatttggtgacaagtgccat 34019173 Query: 173 ttcgcccatggtgagagggagcttggcaggccaccatcctcctacatgtcccaggaaagt 232 |||||||||||||||||||| ||||||| |||| | | |||||||||| || ||| Sbjct: 34019174 ttcgcccatggtgagagggaacttggcaagccagctt------acatgtcccatgagagt 34019227 Query: 233 tcctacgcacctcctacgggtggtcgatatggaggtcgacacgaaccacctcctccagct 292 || || ||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct: 34019228 gccatggctcctcctatgggtggtcgatatggaggccgacctgaaccacctccaccagcc 34019287 Query: 293 tcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagtgtcgat 352 | ||||| |||||||| ||||||||||| || || |||| |||| |||| || ||| Sbjct: 34019288 gctatgggtcctccagcaggaaactttggtgcatctgctactgccaagatcagcgttgat 34019347 Query: 353 gccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatctgccgt 412 ||| | || || || |||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 34019348 gcctcgcttgctggtggcataattgggaagggtggagtcaacacgaagcagatatgccga 34019407 Query: 413 gtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaagaacatt 472 || || |||||||||||||| ||||| ||||| |||||| | || || ||||||||||| Sbjct: 34019408 gtaactggggtcaagctctcaatacgtgaccatgaatcagattcaaacctgaagaacatt 34019467 Query: 473 gagctcgaaggca 485 ||||||||||||| Sbjct: 34019468 gagctcgaaggca 34019480 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 1 gcactttgtccctggtgggtaccaggcagtatcaaaatcacacaacctaggccatgctgc 60 ||||||||||||||||||||| || |||||| ||||| ||| ||| |||||| | | || Sbjct: 34018981 gcactttgtccctggtgggtatcaagcagtagcaaaaacactcaatctaggcaacccagc 34019040 Query: 61 tgtgtctgcaccgtcaagaactcctgcagatcatgctgct 100 |||| |||||||| ||||| ||||| |||||||||||| Sbjct: 34019041 tgtgcctgcaccggcaagagctcctatggatcatgctgct 34019080
>dbj|AK121951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K04, full insert sequence Length = 1349 Score = 274 bits (138), Expect = 3e-70 Identities = 314/373 (84%), Gaps = 6/373 (1%) Strand = Plus / Plus Query: 113 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccat 172 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 438 acacgcatgtgcaccaagtataacactgcagaaggctgcaaatttggtgacaagtgccat 497 Query: 173 ttcgcccatggtgagagggagcttggcaggccaccatcctcctacatgtcccaggaaagt 232 |||||||||||||||||||| ||||||| |||| | | |||||||||| || ||| Sbjct: 498 ttcgcccatggtgagagggaacttggcaagccagctt------acatgtcccatgagagt 551 Query: 233 tcctacgcacctcctacgggtggtcgatatggaggtcgacacgaaccacctcctccagct 292 || || ||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct: 552 gccatggctcctcctatgggtggtcgatatggaggccgacctgaaccacctccaccagcc 611 Query: 293 tcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagtgtcgat 352 | ||||| |||||||| ||||||||||| || || |||| |||| |||| || ||| Sbjct: 612 gctatgggtcctccagcaggaaactttggtgcatctgctactgccaagatcagcgttgat 671 Query: 353 gccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatctgccgt 412 ||| | || || || |||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 672 gcctcgcttgctggtggcataattgggaagggtggagtcaacacgaagcagatatgccga 731 Query: 413 gtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaagaacatt 472 || || |||||||||||||| ||||| ||||| ||||| | || || ||||||||||| Sbjct: 732 gtaactggggtcaagctctcaatacgtgaccatgaatcggattcaaacctgaagaacatt 791 Query: 473 gagctcgaaggca 485 ||||||||||||| Sbjct: 792 gagctcgaaggca 804 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 1 gcactttgtccctggtgggtaccaggcagtatcaaaatcacacaacctaggccatgctgc 60 ||||||||||||||||||||| || |||||| ||||| ||| ||| |||||| | | || Sbjct: 305 gcactttgtccctggtgggtatcaagcagtagcaaaaacactcaatctaggcaacccagc 364 Query: 61 tgtgtctgcaccgtcaagaactcctgcagatcatgctgct 100 |||| |||||||| ||||| ||||| |||||||||||| Sbjct: 365 tgtgcctgcaccggcaagagctcctatggatcatgctgct 404
>gb|AY112248.1| Zea mays CL633_5 mRNA sequence Length = 1172 Score = 117 bits (59), Expect = 4e-23 Identities = 164/199 (82%) Strand = Plus / Plus Query: 287 ccagcttcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagt 346 |||||| | |||||||||||||| ||||||||||| |||||| | || |||| ||||| Sbjct: 525 ccagctgccatgggccctccagcaggaaactttggtgcctcggcgactgccaagatcagt 584 Query: 347 gtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatc 406 || ||||| |||| ||||| |||||||| || ||||| ||||||||||| |||||||| Sbjct: 585 gtggatgcgtctcttgccggtggcataattggtaagggcggggtcaacactaagcagata 644 Query: 407 tgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaag 466 || | ||||| | ||||||||||| || ||||||||||| || | ||| || ||||| Sbjct: 645 agcagagtcaccgaggtcaagctctgtatccgcgaccacgagtctagccccaacctgaag 704 Query: 467 aacattgagctcgaaggca 485 ||||||||||| ||||||| Sbjct: 705 aacattgagctggaaggca 723 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 113 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgcca 171 ||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||| Sbjct: 366 acacgcatgtgcaccaagtacaatactacagaaggctgcagatttggtgataagtgcca 424
>gb|AY103670.1| Zea mays PCO086234 mRNA sequence Length = 1256 Score = 109 bits (55), Expect = 9e-21 Identities = 163/199 (81%) Strand = Plus / Plus Query: 287 ccagcttcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagt 346 |||||| | |||||||||||||| ||||||||||| |||||| | || |||| ||||| Sbjct: 554 ccagctgccatgggccctccagcaggaaactttggtgcctcggcgactgccaagatcagt 613 Query: 347 gtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatc 406 || || ||| |||| ||||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 614 gtggacgcctctctggccggtggcataatcggcaagggtggggtcaacactaagcagata 673 Query: 407 tgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaag 466 | | | || || ||||||||||| || ||||||||||| || ||||| || | ||| Sbjct: 674 agtagaattacaggcgtcaagctctccatccgcgaccacgagtctaaccccaacctaaag 733 Query: 467 aacattgagctcgaaggca 485 ||||| ||||| ||||||| Sbjct: 734 aacatcgagctggaaggca 752 Score = 109 bits (55), Expect = 9e-21 Identities = 67/71 (94%) Strand = Plus / Plus Query: 107 gtcaaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaag 166 ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| Sbjct: 392 gtcaagacacgcatgtgcaccaagtacaacactacagaaggctgcaagttcggtgataag 451 Query: 167 tgccatttcgc 177 ||||||||||| Sbjct: 452 tgccatttcgc 462 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1 gcactttgtccctggtgggtaccaggcagt 30 |||||||||||||||||| |||| |||||| Sbjct: 262 gcactttgtccctggtggttacccggcagt 291 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 241 acctcctacgggtggtcgatatgga 265 |||||||| |||||||||||||||| Sbjct: 511 acctcctatgggtggtcgatatgga 535 Score = 40.1 bits (20), Expect = 6.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 155 tttggtgacaagtgccatttcgcccatggtgagagggagc 194 ||||||||| |||||| ||||||||||| |||| ||||| Sbjct: 944 tttggtgaccggtgccacttcgcccatggcgagacggagc 983
>dbj|AP006377.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT38A19, TM0221, complete sequence Length = 110900 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 110 aaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgc 169 ||||| ||||| |||| ||||| |||||||| ||||||||||| ||||||||||| ||| Sbjct: 77925 aaaactcgcatatgcaacaagtttaacactgctgaaggctgcaaatttggtgacaaatgc 77984 Query: 170 catttcgcccatggtga 186 ||||| ||||||||||| Sbjct: 77985 cattttgcccatggtga 78001
>gb|AC166091.3| Glycine max clone gmw1-11j16, complete sequence Length = 69947 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 116 cgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttc 175 ||||| |||| ||||| || ||||| ||||| ||||| ||||||||||| |||||||| Sbjct: 1336 cgcatatgcaacaagtttaatactgctgaaggttgcaaatttggtgacaaatgccatttt 1395 Query: 176 gcccatggtgagagggagcttggca 200 || |||||||| |||||||||||| Sbjct: 1396 gctcatggtgaatgggagcttggca 1420
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 110 aaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgc 169 ||||| |||||||| | ||||||||||||||||||||| || || | ||| |||||| Sbjct: 24426076 aaaactcgcatgtgtaacaagtacaacactgcagaaggatgtaaatggggtagcaagtgt 24426017 Query: 170 catttcgcccatggtgagagggagcttgg 198 ||||| || ||||| |||||||||||||| Sbjct: 24426016 cattttgctcatggagagagggagcttgg 24425988 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 148 ctgcaagtttggtgacaagtgccatttcgcccatggtgagagggagct 195 ||||| |||||| |||| ||| ||||||||||||||||| || ||||| Sbjct: 24425558 ctgcacgtttggagacaggtgtcatttcgcccatggtgaaagtgagct 24425511
>dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0012B02 Length = 149807 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 110 aaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgc 169 ||||| |||||||| | ||||||||||||||||||||| || || | ||| |||||| Sbjct: 37549 aaaactcgcatgtgtaacaagtacaacactgcagaaggatgtaaatggggtagcaagtgt 37490 Query: 170 catttcgcccatggtgagagggagcttgg 198 ||||| || ||||| |||||||||||||| Sbjct: 37489 cattttgctcatggagagagggagcttgg 37461 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 148 ctgcaagtttggtgacaagtgccatttcgcccatggtgagagggagct 195 ||||| |||||| |||| ||| ||||||||||||||||| || ||||| Sbjct: 37031 ctgcacgtttggagacaggtgtcatttcgcccatggtgaaagtgagct 36984
>dbj|AK103787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I17, full insert sequence Length = 3135 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 110 aaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgc 169 ||||| |||||||| | ||||||||||||||||||||| || || | ||| |||||| Sbjct: 2234 aaaactcgcatgtgtaacaagtacaacactgcagaaggatgtaaatggggtagcaagtgt 2293 Query: 170 catttcgcccatggtgagagggagcttgg 198 ||||| || ||||| |||||||||||||| Sbjct: 2294 cattttgctcatggagagagggagcttgg 2322 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Plus Query: 148 ctgcaagtttggtgacaagtgccatttcgcccatggtgagagggagct 195 ||||| |||||| |||| ||| ||||||||||||||||| || ||||| Sbjct: 2752 ctgcacgtttggagacaggtgtcatttcgcccatggtgaaagtgagct 2799
>ref|XM_464444.1| Oryza sativa (japonica cultivar-group), mRNA Length = 903 Score = 58.0 bits (29), Expect = 3e-05 Identities = 113/141 (80%) Strand = Plus / Plus Query: 337 caaggtcagtgtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacac 396 |||| ||||||| ||||| |||| || || ||||||||||||| ||||||||| ||||| Sbjct: 519 caagatcagtgttgatgcatctcttgcaggtggcataatcgggaggggtggggttaacac 578 Query: 397 gaagcagatctgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaaccc 456 |||||||| | | | ||||| |||| |||||| | || || || || |||||| || | Sbjct: 579 aaagcagatatccagagtcacaggggccaagctggccatccgtgatcatgaatcagacac 638 Query: 457 agacttgaagaacattgagct 477 ||||||| ||||||||||| Sbjct: 639 caacttgaaaaacattgagct 659 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Plus Query: 120 tgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttcgccc 179 |||||| |||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct: 311 tgtgcaacaagtataacactgcagagggatgcaaatggggggataagtgccactttgcgc 370 Query: 180 atggtgagagggagcttggca 200 | |||||||||||||| |||| Sbjct: 371 acggtgagagggagctcggca 391 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 155 tttggtgacaagtgccatttcgcccatggtga 186 ||||| |||| ||||||||| ||||||||||| Sbjct: 841 tttggcgacaggtgccattttgcccatggtga 872
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 3e-05 Identities = 113/141 (80%) Strand = Plus / Plus Query: 337 caaggtcagtgtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacac 396 |||| ||||||| ||||| |||| || || ||||||||||||| ||||||||| ||||| Sbjct: 5253170 caagatcagtgttgatgcatctcttgcaggtggcataatcgggaggggtggggttaacac 5253229 Query: 397 gaagcagatctgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaaccc 456 |||||||| | | | ||||| |||| |||||| | || || || || |||||| || | Sbjct: 5253230 aaagcagatatccagagtcacaggggccaagctggccatccgtgatcatgaatcagacac 5253289 Query: 457 agacttgaagaacattgagct 477 ||||||| ||||||||||| Sbjct: 5253290 caacttgaaaaacattgagct 5253310 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Plus Query: 120 tgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttcgccc 179 |||||| |||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct: 5252962 tgtgcaacaagtataacactgcagagggatgcaaatggggggataagtgccactttgcgc 5253021 Query: 180 atggtgagagggagcttggca 200 | |||||||||||||| |||| Sbjct: 5253022 acggtgagagggagctcggca 5253042 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 155 tttggtgacaagtgccatttcgcccatggtga 186 ||||| |||| ||||||||| ||||||||||| Sbjct: 5253492 tttggcgacaggtgccattttgcccatggtga 5253523
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 58.0 bits (29), Expect = 3e-05 Identities = 113/141 (80%) Strand = Plus / Plus Query: 337 caaggtcagtgtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacac 396 |||| ||||||| ||||| |||| || || ||||||||||||| ||||||||| ||||| Sbjct: 146623 caagatcagtgttgatgcatctcttgcaggtggcataatcgggaggggtggggttaacac 146682 Query: 397 gaagcagatctgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaaccc 456 |||||||| | | | ||||| |||| |||||| | || || || || |||||| || | Sbjct: 146683 aaagcagatatccagagtcacaggggccaagctggccatccgtgatcatgaatcagacac 146742 Query: 457 agacttgaagaacattgagct 477 ||||||| ||||||||||| Sbjct: 146743 caacttgaaaaacattgagct 146763 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Plus Query: 120 tgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttcgccc 179 |||||| |||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct: 146415 tgtgcaacaagtataacactgcagagggatgcaaatggggggataagtgccactttgcgc 146474 Query: 180 atggtgagagggagcttggca 200 | |||||||||||||| |||| Sbjct: 146475 acggtgagagggagctcggca 146495 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 155 tttggtgacaagtgccatttcgcccatggtga 186 ||||| |||| ||||||||| ||||||||||| Sbjct: 146945 tttggcgacaggtgccattttgcccatggtga 146976
>emb|AJ297304.1|PPI297304 Pinus pinaster partial mRNA for protein with similarity to the EST C99174 Length = 243 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 155 tttggtgacaagtgccatttcgcccatggtgagagggagcttgg 198 ||||| |||||||||||||| ||||||||||| | ||||||||| Sbjct: 60 tttggggacaagtgccattttgcccatggtgaaaaggagcttgg 103
>gb|BC100162.1| Xenopus laevis cDNA clone MGC:114600 IMAGE:4174475, complete cds Length = 2595 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 148 ctgcaagtttggtgacaagtgccatttcgcccatgg 183 |||||||| ||||||||||||||| || |||||||| Sbjct: 616 ctgcaagtatggtgacaagtgccagtttgcccatgg 651
>gb|AY104443.1| Zea mays PCO095642 mRNA sequence Length = 1246 Score = 46.1 bits (23), Expect = 0.11 Identities = 68/83 (81%) Strand = Plus / Plus Query: 116 cgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttc 175 |||||||| | ||||||||||||||| ||||| || || | || ||||||||| || Sbjct: 440 cgcatgtgtaacaagtacaacactgccgaaggatgtaaatgggggagcaagtgccacttt 499 Query: 176 gcccatggtgagagggagcttgg 198 || ||||| |||||||||||||| Sbjct: 500 gctcatggagagagggagcttgg 522
>ref|XM_523457.1| PREDICTED: Pan troglodytes similar to Zinc finger protein 469 (LOC468066), mRNA Length = 9939 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 caaggtcagtgtcgatgccgctct 360 ||||||||||| |||||||||||| Sbjct: 4185 caaggtcagtggcgatgccgctct 4162
>gb|AC165141.4| Mus musculus BAC clone RP24-535G5 from chromosome 17, complete sequence Length = 187883 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gtttggtgacaagtgccatt 173 |||||||||||||||||||| Sbjct: 58898 gtttggtgacaagtgccatt 58917
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gaactcctgcagatcatgct 97 |||||||||||||||||||| Sbjct: 3791380 gaactcctgcagatcatgct 3791399
>ref|XM_653425.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0913.2), mRNA Length = 921 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 accacctcctccagcttcga 296 |||||||||||||||||||| Sbjct: 684 accacctcctccagcttcga 703
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gaactcctgcagatcatgct 97 |||||||||||||||||||| Sbjct: 3812853 gaactcctgcagatcatgct 3812872
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gaactcctgcagatcatgct 97 |||||||||||||||||||| Sbjct: 3595583 gaactcctgcagatcatgct 3595602
>emb|CT025463.2| Xenopus tropicalis finished cDNA, clone TGas119k03 Length = 2491 Score = 40.1 bits (20), Expect = 6.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 148 ctgcaagtttggtgacaagtgccatttcgcccatgg 183 |||||||| |||||||||||||| || |||||||| Sbjct: 671 ctgcaagtacggtgacaagtgccagtttgcccatgg 706
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 tgccatttcgcccatggtga 186 |||||||||||||||||||| Sbjct: 2813448 tgccatttcgcccatggtga 2813429
>emb|AL020995.14|HS117O3 Human DNA sequence from clone RP1-117O3 on chromosome 1p33-34.3 Contains the 3' end of a novel gene, the AK2 gene for adenylate kinase 2, the gene for ornithine decarboxylase-like (ODC-p) and a CpG island, complete sequence Length = 150997 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 acactgcagaaggctgcaag 154 |||||||||||||||||||| Sbjct: 73324 acactgcagaaggctgcaag 73343
>ref|XM_783612.1| PREDICTED: Strongylocentrotus purpuratus similar to PPAR-alpha interacting complex protein 285 (LOC583716), mRNA Length = 10350 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cgaaccacctcctccagctt 293 |||||||||||||||||||| Sbjct: 1640 cgaaccacctcctccagctt 1621
>gb|AC164662.6| Mus musculus 10 BAC RP24-279D11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 154482 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gtttggtgacaagtgccatt 173 |||||||||||||||||||| Sbjct: 80031 gtttggtgacaagtgccatt 80012
>gb|AC011342.5| Homo sapiens chromosome 5 clone CTC-276H5, complete sequence Length = 120584 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 gggagcttggcaggccacca 208 |||||||||||||||||||| Sbjct: 111309 gggagcttggcaggccacca 111328
>gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complete sequence Length = 176629 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 gggagcttggcaggccacca 208 |||||||||||||||||||| Sbjct: 161334 gggagcttggcaggccacca 161315
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 tgcagatcatgctgcttctggtgt 108 ||||||||| |||||||||||||| Sbjct: 1867439 tgcagatcaagctgcttctggtgt 1867462
>emb|X91077.1|VFRNAMETA V.faba mRNA for metallothionein protein (683bp) Length = 683 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 142 agaaggctgcaagtttggtgacaagtgc 169 |||||||||||||| |||||| |||||| Sbjct: 238 agaaggctgcaagtgtggtgataagtgc 265
>ref|XM_313187.2| Anopheles gambiae str. PEST ENSANGP00000013277 (ENSANGG00000010788), partial mRNA Length = 3012 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 gctgcaagtttggtgacaagtgcc 170 ||||||||||||| |||||||||| Sbjct: 2660 gctgcaagtttggcgacaagtgcc 2683
>gb|AC153496.4| Mus musculus 10 BAC RP23-373D1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 149839 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gtttggtgacaagtgccatt 173 |||||||||||||||||||| Sbjct: 51098 gtttggtgacaagtgccatt 51117
>emb|AL672242.12| Mouse DNA sequence from clone RP23-83P17 on chromosome 17, complete sequence Length = 222709 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gtttggtgacaagtgccatt 173 |||||||||||||||||||| Sbjct: 204798 gtttggtgacaagtgccatt 204779 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,368,650 Number of Sequences: 3902068 Number of extensions: 3368650 Number of successful extensions: 66173 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65935 Number of HSP's gapped (non-prelim): 228 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)