ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags12e06 |
|---|---|
| Clone Library Name | barley_pub |
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 277 bits (708), Expect = 2e-74 Identities = 127/194 (65%), Positives = 168/194 (86%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVV 239 GML+NDK+VYVGPF+R+QERD++ KF NVYVKNLAE+TT+DDLK FG++G ITS V Sbjct: 186 GMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAV 245 Query: 240 VMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFE 419 VM+DG+G+SK FGFVNFE+ D+AA AV+ LNG KF DKEWYVGRAQKKSERE EL+ ++E Sbjct: 246 VMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYE 305 Query: 420 KNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAF 599 +NL+EAADK+Q++NLY+KNLD ++ DEKL+E+F+ FGT+TS KVMRD NG S+GSGFVAF Sbjct: 306 QNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAF 365 Query: 600 KSADDASRALAEMN 641 + ++A+ A+++++ Sbjct: 366 ATPEEATEAMSQLS 379 Score = 125 bits (313), Expect = 1e-28 Identities = 68/180 (37%), Positives = 101/180 (56%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGF 281 V RD S N+++KNL E+ L + F FG I S V D G+SK +GF Sbjct: 109 VMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGF 168 Query: 282 VNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTN 461 V + + + A A++ LNG +DK+ YVG ++ ER+ A+K + TN Sbjct: 169 VQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD------------STANKTKFTN 216 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 +Y+KNL ++ D+ L+ F E+G ITS VM+D G S+G GFV F++ADDA+RA+ +N Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276 Score = 93.2 bits (230), Expect = 6e-19 Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 1/165 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 ++YV +L T+ L + FG+ GT+ +V V RD RS +G+VNF +P +AA A+Q+ Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LN K V S R+ ++ + N+++KNLD+++D + L Sbjct: 97 LNYIPLYGKPIRV----MYSHRDPSVR------------RSGAGNIFIKNLDESIDHKAL 140 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + F+ FG I SCKV DS+G S+G GFV + + + A +A+ ++N Sbjct: 141 HDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185 Score = 92.4 bits (228), Expect = 1e-18 Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 12/133 (9%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNS----------PGSVKF--NNVYVKNLAETTTEDDLKE 203 G +DK+ YVG +K ER+ + KF +N+YVKNL + +++ LKE Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336 Query: 204 IFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKK 383 IF FGT+TS VMRD +G SK GFV F +P+EA A+ L+GK K YV AQ+K Sbjct: 337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396 Query: 384 SEREMELKEKFEK 422 +R + L+ +F + Sbjct: 397 EDRRVRLQAQFSQ 409 Score = 52.4 bits (124), Expect = 1e-06 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = +3 Query: 438 ADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADD 614 A ++ NT+LY+ +LD V D +L + F + GT+ + +V RD S G G+V F + D Sbjct: 30 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQD 89 Query: 615 ASRALAEMN 641 A+RA+ E+N Sbjct: 90 AARAIQELN 98
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 226 bits (576), Expect = 4e-59 Identities = 114/196 (58%), Positives = 145/196 (73%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQER--DNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GMLMNDK+V+VG F+R+QER D + + +F NVYVKNL + ED+L++ FGKFG I+S Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISS 257 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 VVMRD G S+CFGFVNFE + AA AV+ +NG D YVGRAQKKSERE EL+ K Sbjct: 258 AVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRK 317 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ +K Q NLYLKNLDD+VDDEKL+E+F+E+G +TS KVM + G SRG GFV Sbjct: 318 FEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFV 377 Query: 594 AFKSADDASRALAEMN 641 A+ + ++A RAL+EMN Sbjct: 378 AYSNPEEALRALSEMN 393 Score = 112 bits (280), Expect = 9e-25 Identities = 66/175 (37%), Positives = 95/175 (54%) Frame = +3 Query: 117 RDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFES 296 RD S N+++KNL + L E F FGTI S V D GRSK +GFV FE Sbjct: 126 RDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEK 185 Query: 297 PDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKN 476 + A A+ LNG +DK+ +VG ++ ER + E + TN+Y+KN Sbjct: 186 EESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD----------ENTPTPRFTNVYVKN 235 Query: 477 LDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 L + +++LR+ F +FG I+S VMRD +G SR GFV F+ + A+ A+ +MN Sbjct: 236 LPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290 Score = 81.6 bits (200), Expect = 2e-15 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 12/133 (9%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERD------------NSPGSVKFNNVYVKNLAETTTEDDLKE 203 G+ + D +YVG +K ER+ N + N+Y+KNL ++ ++ LKE Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350 Query: 204 IFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKK 383 +F ++G +TS VM + G S+ FGFV + +P+EA A+ ++NGK K Y+ AQ+K Sbjct: 351 MFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRK 410 Query: 384 SEREMELKEKFEK 422 +R L+ F + Sbjct: 411 EDRRAHLQALFSQ 423 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/69 (33%), Positives = 37/69 (53%) Frame = +3 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADD 614 A + N++LY +LD V + L +LF + S +V RD N S G ++ F + +D Sbjct: 42 ADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPND 101 Query: 615 ASRALAEMN 641 A RA+ +N Sbjct: 102 AYRAMEALN 110
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 220 bits (561), Expect = 2e-57 Identities = 109/196 (55%), Positives = 145/196 (73%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSV--KFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+NDK+V+VG FVR+Q+R S F NVYVKNL + T+D+LK+ FGK+G I+S Sbjct: 194 GMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISS 253 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 VVM+D G S+ FGFVNF SP+ AA+AV+ +NG + YVGRAQKKS+RE EL+ K Sbjct: 254 AVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRK 313 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ +K Q +NLYLKNLDD+V+DEKL+E+F+E+G +TSCKVM +S G SRG GFV Sbjct: 314 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFV 373 Query: 594 AFKSADDASRALAEMN 641 A+ + ++A A+ EMN Sbjct: 374 AYSNPEEALLAMKEMN 389 Score = 108 bits (271), Expect = 1e-23 Identities = 65/175 (37%), Positives = 94/175 (53%) Frame = +3 Query: 117 RDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFES 296 RD S NV++KNL + L E F FGTI S V D GRSK +GFV FE Sbjct: 122 RDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEK 181 Query: 297 PDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKN 476 + A A+ LNG +DK+ +VG ++ +R E+ TN+Y+KN Sbjct: 182 EETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRAR----------SESGAVPSFTNVYVKN 231 Query: 477 LDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 L + D++L++ F ++G I+S VM+D +G SR GFV F S + A+ A+ +MN Sbjct: 232 LPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286 Score = 87.0 bits (214), Expect = 4e-17 Identities = 46/131 (35%), Positives = 77/131 (58%), Gaps = 12/131 (9%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRK------------QERDNSPGSVKFNNVYVKNLAETTTEDDLKE 203 G+ + + +YVG +K QER + ++ +N+Y+KNL ++ ++ LKE Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346 Query: 204 IFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKK 383 +F ++G +TS VM + G S+ FGFV + +P+EA LA++++NGK K YV AQ+K Sbjct: 347 MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRK 406 Query: 384 SEREMELKEKF 416 ER+ L+ F Sbjct: 407 EERQAHLQSLF 417 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = +3 Query: 432 EAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSAD 611 EA + N++LY+ +LD +V++ L +LF + + + +V RD S G +V F + + Sbjct: 37 EALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPE 96 Query: 612 DASRALAEMN 641 DASRA+ +N Sbjct: 97 DASRAMESLN 106
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 206 bits (523), Expect = 6e-53 Identities = 104/196 (53%), Positives = 144/196 (73%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSV--KFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+ND+KV+VG F ++ER+ G+ +F NVY+KN E ++ LKE+F +FG S Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VMRD +G+SK FGFV++E ++A AV+++NGK+ S K +VGRAQKK ER+ ELK K Sbjct: 220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ QE +YQ NLY+KNLDDT+DDEKLR+ F+ FG+ITS KVM + +G S+G GFV Sbjct: 280 FEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 129 bits (323), Expect = 1e-29 Identities = 71/176 (40%), Positives = 108/176 (61%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S NV++KNL ++ L + F FG I S V+ D +G SK + FV+FE Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + + A A++ +NG +D++ +VGR + + ERE EL K + + TN+Y+K Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK----------EFTNVYIK 196 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 N + VDDE L+ELF++FG S KVMRD NG S+G GFV+++ +DA++A+ EMN Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252 Score = 82.8 bits (203), Expect = 8e-16 Identities = 47/103 (45%), Positives = 65/103 (63%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 KQER + V N+Y+KNL +T ++ L++ F FG+ITS VM + DGRSK FGFV Sbjct: 284 KQERISRYQGV---NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339 Query: 288 FESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKF 416 F SP+EA AV ++NG+ K YV AQ+K ER+ L ++ Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382 Score = 76.6 bits (187), Expect = 6e-14 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 1/165 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 ++YV +L TE L E F G + S+ V RD RS + +VNF+ P +A A+ Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 +N K + S+R+ L+ K N+++KNLD ++D++ L Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLR------------KSGVGNVFIKNLDKSIDNKAL 115 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + F+ FG I SCKV+ D NG S+G FV F++ + A +A+ +MN Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 204 bits (520), Expect = 1e-52 Identities = 104/196 (53%), Positives = 141/196 (71%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGS--VKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+ND+KV+VG F ++ER+ G+ +F NVY+KN E ++ LKE+FGKFG S Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VM D G+SK FGFV+FE ++A AV ++NGK+ + K+ YVGRAQKK ER+ ELK K Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ Q+ +YQ NLY+KNLDD +DDE+LR+ F+ FGTITS KVM + G S+G GFV Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 125 bits (314), Expect = 1e-28 Identities = 69/176 (39%), Positives = 106/176 (60%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S N+++KNL ++ L + F FG I S V+ D +G SK +GFV+FE Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + + A A++ +NG +D++ +VGR + + ERE EL A + TN+Y+K Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------GARAKEFTNVYIK 196 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 N + +DDE+L+ELF +FG S KVM D +G S+G GFV+F+ +DA +A+ EMN Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Score = 87.0 bits (214), Expect = 4e-17 Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 13/136 (9%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVKFN-------------NVYVKNLAETTTEDDLK 200 G +N K++YVG +K ER KF N+YVKNL + ++ L+ Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKR-KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 201 EIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQK 380 + F FGTITS VM +G GRSK FGFV F SP+EA AV ++NG+ + K YV AQ+ Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370 Query: 381 KSEREMELKEKFEKNL 428 K ER+ L ++ + + Sbjct: 371 KEERQAHLTNQYMQRM 386
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 204 bits (519), Expect = 2e-52 Identities = 104/196 (53%), Positives = 141/196 (71%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGS--VKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+ND+KV+VG F ++ER+ G+ +F NVY+KN E ++ LKE+FGKFG S Sbjct: 160 GMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VM D G+SK FGFV+FE ++A AV ++NGK+ + K+ YVGRAQKK ER+ ELK K Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ Q+ +YQ NLY+KNLDD +DDE+LR+ F+ FGTITS KVM + G S+G GFV Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 125 bits (313), Expect = 1e-28 Identities = 69/176 (39%), Positives = 106/176 (60%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S N+++KNL ++ L + F FG I S V+ D +G SK +GFV+FE Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + + A A++ +NG +D++ +VGR + + ERE EL A + TN+Y+K Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAEL----------GARAKEFTNVYIK 196 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 N + +DDE+L+ELF +FG S KVM D +G S+G GFV+F+ +DA +A+ EMN Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Score = 87.0 bits (214), Expect = 4e-17 Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 13/136 (9%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVKFN-------------NVYVKNLAETTTEDDLK 200 G +N K++YVG +K ER KF N+YVKNL + ++ L+ Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKR-KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 201 EIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQK 380 + F FGTITS VM +G GRSK FGFV F SP+EA AV ++NG+ + K YV AQ+ Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370 Query: 381 KSEREMELKEKFEKNL 428 K ER+ L ++ + + Sbjct: 371 KEERQAHLTNQYMQRM 386 Score = 80.9 bits (198), Expect = 3e-15 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 1/173 (0%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPD 302 S S ++YV +L TE L E F G I S+ V RD RS + +VNF+ P Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63 Query: 303 EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLD 482 +A A+ +N K + S+R+ L+ K N+++KNLD Sbjct: 64 DAERALDTMNFDVIKGKPVRI----MWSQRDPSLR------------KSGVGNIFIKNLD 107 Query: 483 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ++D++ L + F+ FG I SCKV+ D NG S+G GFV F++ + A RA+ +MN Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 203 bits (517), Expect = 3e-52 Identities = 103/196 (52%), Positives = 141/196 (71%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGS--VKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+ND+KV+VG F ++ER+ G+ +F NVY+KN E ++ LK++FGKFG S Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VM D G+SK FGFV+FE ++A AV ++NGK+ + K+ YVGRAQKK ER+ ELK K Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ Q+ +YQ NLY+KNLDD +DDE+LR+ F+ FGTITS KVM + G S+G GFV Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 124 bits (311), Expect = 2e-28 Identities = 68/176 (38%), Positives = 106/176 (60%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S N+++KNL ++ L + F FG I S V+ D +G SK +GFV+FE Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + + A A++ +NG +D++ +VGR + + ERE EL A + TN+Y+K Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------GARAKEFTNVYIK 196 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 N + +DDE+L++LF +FG S KVM D +G S+G GFV+F+ +DA +A+ EMN Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Score = 87.0 bits (214), Expect = 4e-17 Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 13/136 (9%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVKFN-------------NVYVKNLAETTTEDDLK 200 G +N K++YVG +K ER KF N+YVKNL + ++ L+ Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKR-KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 201 EIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQK 380 + F FGTITS VM +G GRSK FGFV F SP+EA AV ++NG+ + K YV AQ+ Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370 Query: 381 KSEREMELKEKFEKNL 428 K ER+ L ++ + + Sbjct: 371 KEERQAHLTNQYMQRM 386
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 203 bits (517), Expect = 3e-52 Identities = 103/196 (52%), Positives = 141/196 (71%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGS--VKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+ND+KV+VG F ++ER+ G+ +F NVY+KN E ++ LK++FGKFG S Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VM D G+SK FGFV+FE ++A AV ++NGK+ + K+ YVGRAQKK ER+ ELK K Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ Q+ +YQ NLY+KNLDD +DDE+LR+ F+ FGTITS KVM + G S+G GFV Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 124 bits (311), Expect = 2e-28 Identities = 68/176 (38%), Positives = 106/176 (60%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S N+++KNL ++ L + F FG I S V+ D +G SK +GFV+FE Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + + A A++ +NG +D++ +VGR + + ERE EL A + TN+Y+K Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------GARAKEFTNVYIK 196 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 N + +DDE+L++LF +FG S KVM D +G S+G GFV+F+ +DA +A+ EMN Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Score = 87.0 bits (214), Expect = 4e-17 Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 13/136 (9%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVKFN-------------NVYVKNLAETTTEDDLK 200 G +N K++YVG +K ER KF N+YVKNL + ++ L+ Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKR-KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 201 EIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQK 380 + F FGTITS VM +G GRSK FGFV F SP+EA AV ++NG+ + K YV AQ+ Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370 Query: 381 KSEREMELKEKFEKNL 428 K ER+ L ++ + + Sbjct: 371 KEERQAHLTNQYMQRM 386
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 200 bits (508), Expect = 3e-51 Identities = 101/196 (51%), Positives = 139/196 (70%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGS--VKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+ND+KV+VG F ++ER+ G+ +F NVY+KN + ++ LKE+FGK+G S Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VM D +G+SK FGFV+FE ++A AV ++NGK + K +VGRAQKK ER+ ELK K Sbjct: 220 VKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRK 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ Q+ +YQ NLY+KNLDD +DDE+LR+ F FGTITS KVM + G S+G GFV Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 124 bits (311), Expect = 2e-28 Identities = 68/176 (38%), Positives = 105/176 (59%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S N+++KNL ++ L + F FG I S V+ D +G SK +GFV+FE Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + + A A+ +NG +D++ +VGR + + ERE EL A + TN+Y+K Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL----------GARAKEFTNVYIK 196 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 N D ++DE+L+E+F ++G S KVM D NG S+G GFV+F+ +DA +A+ EMN Sbjct: 197 NFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252 Score = 83.6 bits (205), Expect = 5e-16 Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 13/136 (9%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVKFN-------------NVYVKNLAETTTEDDLK 200 G MN K ++VG +K ER KF N+YVKNL + ++ L+ Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKR-KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 201 EIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQK 380 + F FGTITS VM +G GRSK FGFV F SP+EA AV ++NG+ + K YV AQ+ Sbjct: 312 KEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370 Query: 381 KSEREMELKEKFEKNL 428 K ER+ L ++ + + Sbjct: 371 KEERQAHLTNQYMQRM 386 Score = 80.5 bits (197), Expect = 4e-15 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 1/173 (0%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPD 302 S S ++YV +L + TE L E F G I S+ V RD RS + +VNF+ P Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63 Query: 303 EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLD 482 +A A+ +N + + S+R+ L+ K N+++KNLD Sbjct: 64 DAERALDTMNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNIFIKNLD 107 Query: 483 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ++D++ L + F+ FG I SCKV+ D NG S+G GFV F++ + A RA+ +MN Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 197 bits (502), Expect = 2e-50 Identities = 101/196 (51%), Positives = 139/196 (70%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGS--VKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+N +KV+VG F ++ER+ G+ +F NVY+KN E ++ LK++FGKFG S Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VM D G+SK FGFV+FE ++A AV ++NGK+ + K+ YVGRAQKK ER+ ELK Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRT 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ Q+ +YQ NLY+KNLDD +DDE+LR+ F+ FGTITS KVM + G S+G GFV Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 114 bits (286), Expect = 2e-25 Identities = 65/176 (36%), Positives = 103/176 (58%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S N++VKNL ++ L + FG I S V+ D +G SK +GFV+FE Sbjct: 88 QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFE 146 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + + A A++ +NG + ++ +VG+ + + ERE EL A + N+Y+K Sbjct: 147 THEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL----------GARAKEFPNVYIK 196 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 N + +DDE+L++LF +FG S KVM D +G S+G GFV+F+ +DA +A+ EMN Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Score = 86.7 bits (213), Expect = 5e-17 Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 12/135 (8%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSV------------KFNNVYVKNLAETTTEDDLKE 203 G +N K++YVG +K ER + N+YVKNL + ++ L++ Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312 Query: 204 IFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKK 383 F FGTITS VM +G GRSK FGFV F SP+EA AV ++NG+ + K YV AQ+K Sbjct: 313 AFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371 Query: 384 SEREMELKEKFEKNL 428 ER+ L ++ + + Sbjct: 372 EERQAYLTNEYMQRM 386
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 195 bits (496), Expect = 8e-50 Identities = 100/196 (51%), Positives = 137/196 (69%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGS--VKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+ND+KV+VG F ++ER+ G+ +F NVY+KN E ++ LKE FG++G S Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VM D G+S+ FGFV+FE ++A AV D+NGK + K +VGRAQKK ER+ ELK K Sbjct: 220 VKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRK 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ Q+ +YQ NLY+KNLDD +DDE+LR+ F FG+ITS KVM + G S+G GFV Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 122 bits (305), Expect = 1e-27 Identities = 67/176 (38%), Positives = 104/176 (59%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S N+++KNL ++ L + F FG I S V+ D +G SK +GFV+FE Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + + A A+ +NG +D++ +VGR + + ERE EL A + TN+Y+K Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL----------GARAKEFTNVYIK 196 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 N + +DDE+L+E F ++G S KVM D +G SRG GFV+F+ +DA +A+ +MN Sbjct: 197 NFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252 Score = 82.0 bits (201), Expect = 1e-15 Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 13/136 (9%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVKFN-------------NVYVKNLAETTTEDDLK 200 G +N K ++VG +K ER KF N+YVKNL + ++ L+ Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKR-KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 201 EIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQK 380 + F FG+ITS VM +G GRSK FGFV F SP+EA AV ++NG+ + K YV AQ+ Sbjct: 312 KEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370 Query: 381 KSEREMELKEKFEKNL 428 K ER+ L ++ + + Sbjct: 371 KEERQAHLTNQYMQRM 386 Score = 80.5 bits (197), Expect = 4e-15 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 1/173 (0%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPD 302 S S ++YV +L TE L E F G I S+ V RD RS + +VNF+ P Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63 Query: 303 EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLD 482 +A A+ +N K + S+R+ L+ K N+++KNLD Sbjct: 64 DAERALDTMNFDVIKGKPVRI----MWSQRDPSLR------------KSGVGNIFIKNLD 107 Query: 483 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ++D++ L + F+ FG I SCKV+ D NG S+G GFV F++ + A RA+ +MN Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 194 bits (494), Expect = 1e-49 Identities = 100/196 (51%), Positives = 139/196 (70%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGS--VKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+ND+KV+VG F ++ER+ G+ ++F NVY+KN E + LKEIF FG S Sbjct: 160 GMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VM D GRS+ FGFVN+ + +EA AV ++NGK+ + + YVGRAQK+ ER+ ELK K Sbjct: 220 VKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRK 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ QE ++YQ NLY+KNLDD +DD++LR+ F+ +GTITS KVM + G S+G GFV Sbjct: 280 FEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 115 bits (289), Expect = 8e-26 Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 2/189 (1%) Frame = +3 Query: 81 KVYVGPFVRKQERDNSPGSVK--FNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG 254 +V G +R PG K NV++KNL ++ L + F FG I S V+ D Sbjct: 75 EVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDE 134 Query: 255 DGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQE 434 G S+ +GFV+FE+ + A A+Q +NG +D++ +VG + + ERE+E Sbjct: 135 YG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEY---------- 183 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADD 614 A + TN+Y+KN + +DD++L+E+F+ FG S KVM D++G SRG GFV + + ++ Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEE 243 Query: 615 ASRALAEMN 641 A +A+ EMN Sbjct: 244 AQKAVTEMN 252 Score = 84.3 bits (207), Expect = 3e-16 Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 15/138 (10%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVKFN---------------NVYVKNLAETTTEDD 194 G +N + VYVG R Q+R G +K N+YVKNL + +D Sbjct: 253 GKEVNGRMVYVG---RAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309 Query: 195 LKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRA 374 L++ F +GTITS VM +G G SK FGFV F SP+EA AV ++NG+ S K YV A Sbjct: 310 LRKEFSPYGTITSTKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Query: 375 QKKSEREMELKEKFEKNL 428 Q+K ER+ L ++ + L Sbjct: 369 QRKEERKAILTNQYMQRL 386 Score = 79.3 bits (194), Expect = 9e-15 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 1/165 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 ++Y+ +L TE L E F G I S+ V RD RS + ++NF+ P +A A+ Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 +N + + + S+R+ L+ K N+++KNLDD++D++ L Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLR------------KSGVGNVFIKNLDDSIDNKAL 115 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + F+ FG I SCKV+ D G SRG GFV F++ + A+RA+ MN Sbjct: 116 YDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMN 159
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 194 bits (492), Expect = 2e-49 Identities = 99/196 (50%), Positives = 138/196 (70%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGS--VKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+ND+KV+VG F ++ER+ G+ ++F NVY+KN E + L+EIF FG S Sbjct: 160 GMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VM D GRS+ FGFVN+ + +EA AV ++NGK+ + + YVGRAQK+ ER+ ELK K Sbjct: 220 VKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRK 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ QE ++YQ NLY+KNLDD +DD++LR+ F +GTITS KVM + G S+G GFV Sbjct: 280 FEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 119 bits (297), Expect = 1e-26 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 2/189 (1%) Frame = +3 Query: 81 KVYVGPFVRKQERDNSPGSVK--FNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG 254 +V G +R PG K NV++KNL E+ L + F FG I S V+ D Sbjct: 75 EVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE 134 Query: 255 DGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQE 434 G S+ +GFV+FE+ + A A+Q +NG +D++ +VG + + ERE+E Sbjct: 135 HG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEY---------- 183 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADD 614 A + TN+Y+KN + +DD++LRE+F+ FG S KVM D +G SRG GFV + + ++ Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEE 243 Query: 615 ASRALAEMN 641 A +A++EMN Sbjct: 244 AQKAVSEMN 252 Score = 82.0 bits (201), Expect = 1e-15 Identities = 50/107 (46%), Positives = 66/107 (61%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 KQER N V N+YVKNL + +D L++ F +GTITS VM +G G SK FGFV Sbjct: 284 KQERINRYQGV---NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVC 339 Query: 288 FESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNL 428 F SP+EA AV ++NG+ S K YV AQ+K ER+ L ++ + L Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386 Score = 79.7 bits (195), Expect = 7e-15 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 1/165 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 ++Y+ +L TE L E F G I S+ V RD RS + ++NF+ P +A A+ Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 +N + + + S+R+ L+ K N+++KNLD+++D++ L Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLR------------KSGVGNVFIKNLDESIDNKAL 115 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + F+ FG I SCKV+ D +G SRG GFV F++ + A+RA+ MN Sbjct: 116 YDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMN 159
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 193 bits (491), Expect = 3e-49 Identities = 99/196 (50%), Positives = 139/196 (70%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGS--VKFNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+ND+KV+VG F ++ER+ G+ ++F NVY+KN E + L+EIF FG S Sbjct: 160 GMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLS 219 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 V VM D GRS+ FGFVN+ + +EA AV ++NGK+ + + YVGRAQK+ ER+ ELK K Sbjct: 220 VKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRK 279 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 FE+ QE ++YQ NLY+KNLDD +DD++LR+ F+ +GTITS KVM + G S+G GFV Sbjct: 280 FEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFV 338 Query: 594 AFKSADDASRALAEMN 641 F S ++A++A+ EMN Sbjct: 339 CFSSPEEATKAVTEMN 354 Score = 119 bits (297), Expect = 1e-26 Identities = 70/189 (37%), Positives = 107/189 (56%), Gaps = 2/189 (1%) Frame = +3 Query: 81 KVYVGPFVRKQERDNSPGSVK--FNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG 254 +V G +R PG K NV++KNL E+ L + F FG I S V+ D Sbjct: 75 EVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE 134 Query: 255 DGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQE 434 G S+ +GFV+FE+ + A A+Q +NG +D++ +VG + + ERE+E Sbjct: 135 HG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEY---------- 183 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADD 614 A + TN+Y+KN + +DD++LRE+F+ FG S KVM D G SRG GFV + + ++ Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEE 243 Query: 615 ASRALAEMN 641 A +A++EMN Sbjct: 244 AQKAVSEMN 252 Score = 84.0 bits (206), Expect = 4e-16 Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 15/138 (10%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVKFN---------------NVYVKNLAETTTEDD 194 G +N + +YVG R Q+R G +K N+YVKNL + +D Sbjct: 253 GKEVNGRMIYVG---RAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309 Query: 195 LKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRA 374 L++ F +GTITS VM +G G SK FGFV F SP+EA AV ++NG+ S K YV A Sbjct: 310 LRKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Query: 375 QKKSEREMELKEKFEKNL 428 Q+K ER+ L ++ + L Sbjct: 369 QRKEERKAILTNQYMQRL 386 Score = 79.7 bits (195), Expect = 7e-15 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 1/165 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 ++YV +L TE L E F G I S+ V RD RS + ++NF+ P +A A+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 +N + + + S+R+ L+ K N+++KNLD+++D++ L Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLR------------KSGVGNVFIKNLDESIDNKAL 115 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + F+ FG I SCKV+ D +G SRG GFV F++ + A+RA+ MN Sbjct: 116 YDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMN 159
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 192 bits (489), Expect = 5e-49 Identities = 94/196 (47%), Positives = 139/196 (70%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVK--FNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+NDKKVYVG V ++ER + ++K F NVY+KNL TE + ++FG+FG ITS Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 + +++D + + + FGFVN+ + + A AV +LN K++ K+ YVGRAQKK ERE EL+++ Sbjct: 290 LSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKR 349 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 +E+ E +KYQ NL++KNL D VDDE+L+ F+ FGTITS K+M D G S+G GFV Sbjct: 350 YEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFV 409 Query: 594 AFKSADDASRALAEMN 641 + + ++A++A+ EMN Sbjct: 410 CYTTPEEANKAVTEMN 425 Score = 109 bits (272), Expect = 8e-24 Identities = 61/176 (34%), Positives = 98/176 (55%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S + NV++KNL L + F FG I S V D G +K +GFV+F+ Sbjct: 157 QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFD 216 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 S + A A++ +NG +DK+ YVG + ER+ +++ A K TN+Y+K Sbjct: 217 SVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVE----------ALKANFTNVYIK 266 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 NLD + +++ +LF +FG ITS +++D N RG GFV + + + A +A+ E+N Sbjct: 267 NLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322 Score = 79.3 bits (194), Expect = 9e-15 Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 12/130 (9%) Frame = +3 Query: 78 KKVYVGPFVRKQERDNSPGS-------VKFN-----NVYVKNLAETTTEDDLKEIFGKFG 221 KK+YVG +K ER+ K N N+++KNL + ++ LK F FG Sbjct: 329 KKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFG 388 Query: 222 TITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREME 401 TITS +M D G+SK FGFV + +P+EA AV ++N + + K YV AQ+K R + Sbjct: 389 TITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQ 448 Query: 402 LKEKFEKNLQ 431 L+ + + Q Sbjct: 449 LEAQIQARNQ 458 Score = 79.3 bits (194), Expect = 9e-15 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 1/165 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 ++YV L + TE L E+F G + S+ V RD RS + +VNF + ++ A+ + Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LN + + S+R+ L+ K N+++KNLD +D++ L Sbjct: 141 LNYTLIKGRPCRI----MWSQRDPSLR------------KMGTGNVFIKNLDPAIDNKAL 184 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + F+ FG I SCKV D G ++G GFV F S + A+ A+ +N Sbjct: 185 HDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 453 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRAL 629 + +LY+ LD +V + L ELF G + S +V RD+ S G +V F + +D +AL Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138 Query: 630 AEMN 641 E+N Sbjct: 139 DELN 142
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 191 bits (485), Expect = 2e-48 Identities = 94/196 (47%), Positives = 135/196 (68%), Gaps = 2/196 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVK--FNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+N +++YV P + ++ERD+ K + N+YVKN+ TT++ +E+F KFG I S Sbjct: 187 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVS 246 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 + +D DG+ K FGFVN+E ++A AV+ LN + + ++ YVGRAQKK+ER LK++ Sbjct: 247 ASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQ 306 Query: 414 FEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFV 593 +E E KYQ NL++KNLDD+VDDEKL E FA +GTITS KVMR NG S+G GFV Sbjct: 307 YEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFV 366 Query: 594 AFKSADDASRALAEMN 641 F + ++A++A+ E N Sbjct: 367 CFSTPEEATKAITEKN 382 Score = 108 bits (271), Expect = 1e-23 Identities = 62/176 (35%), Positives = 95/176 (53%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S N+++KNL L + F FG I S + D +G+SK FGFV+FE Sbjct: 114 QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFE 173 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 A A+ LNG + +E YV + ER+ +L+E K TNLY+K Sbjct: 174 EEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEE----------TKAHYTNLYVK 223 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 N++ DE+ +ELFA+FG I S + +D++G +G GFV ++ +DA +A+ +N Sbjct: 224 NINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 279 Score = 78.6 bits (192), Expect = 1e-14 Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 12/133 (9%) Frame = +3 Query: 69 MNDKKVYVGPFVRKQERDN------------SPGSVKFNNVYVKNLAETTTEDDLKEIFG 212 +N +K+YVG +K ER + + N++VKNL ++ ++ L+E F Sbjct: 283 LNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFA 342 Query: 213 KFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSER 392 +GTITS VMR +G+SK FGFV F +P+EA A+ + N + + K YV AQ+K R Sbjct: 343 PYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVR 402 Query: 393 EMELKEKFEKNLQ 431 +L ++ + Q Sbjct: 403 RSQLAQQIQARNQ 415 Score = 72.8 bits (177), Expect = 8e-13 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 1/165 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC-FGFVNFESPDEAALAVQD 326 ++YV +L + +E L +IF G+++S+ V RD ++ + +VNF + A++ Sbjct: 38 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 97 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LN + + S+R+ L++K + N+++KNL +D++ L Sbjct: 98 LNYTPIKGRLCRI----MWSQRDPSLRKK------------GSGNIFIKNLHPDIDNKAL 141 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + F+ FG I S K+ D NG S+G GFV F+ A A+ +N Sbjct: 142 YDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 186 Score = 36.6 bits (83), Expect = 0.065 Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Frame = +3 Query: 453 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRAL 629 + +LY+ +L+ +V + L ++F+ G+++S +V RD+ S G +V F + +A+ Sbjct: 36 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 95 Query: 630 AEMN 641 ++N Sbjct: 96 EQLN 99
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 189 bits (481), Expect = 5e-48 Identities = 101/197 (51%), Positives = 130/197 (65%), Gaps = 3/197 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVK--FNNVYVKNLAETTTEDDLKEIFGKFGTITS 233 GML+N KKVYVG F+ ++ER+ G F NVYVKN E ++ LKE F +G ITS Sbjct: 152 GMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITS 211 Query: 234 VVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSD-KEWYVGRAQKKSEREMELKE 410 VM DG+SK FGFV FE+ + A AVQ LNGK + K YV RAQKK+ER+ ELK Sbjct: 212 YKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKR 271 Query: 411 KFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGF 590 KFE+ Q+ + NLY+KNLDDT+DD++LR F+ +G ITS KVM D G S+G GF Sbjct: 272 KFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGF 331 Query: 591 VAFKSADDASRALAEMN 641 V F +A +A+ A+ E+N Sbjct: 332 VCFNAASEATCAVTELN 348 Score = 116 bits (291), Expect = 5e-26 Identities = 67/176 (38%), Positives = 96/176 (54%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFE 293 +RD S NV++KNL + + F FG I S V D G SK +GFV+FE Sbjct: 79 QRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFE 138 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + + A ++ +NG + K+ YVG+ + ERE EL EK + TN+Y+K Sbjct: 139 TEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAK----------LFTNVYVK 188 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 N + DDEKL+E F +G ITS KVM +G S+G GFVAF++ + A A+ +N Sbjct: 189 NFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244 Score = 84.7 bits (208), Expect = 2e-16 Identities = 47/107 (43%), Positives = 64/107 (59%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 KQ+R S V N+YVKNL +T +D L+ F +G ITS VM D +GRSK FGFV Sbjct: 277 KQKRHESVFGV---NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVC 333 Query: 288 FESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNL 428 F + EA AV +LNG+ K YV AQ+K ER+ L ++ +++ Sbjct: 334 FNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 157 bits (396), Expect = 3e-38 Identities = 84/197 (42%), Positives = 126/197 (63%), Gaps = 3/197 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERD---NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTIT 230 G+ +N+++VYVG F +ER + F NV+VKN+ + ++ LKE+F ++G Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTE 226 Query: 231 SVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKE 410 SV V+RD G+SK FGFV +E+ + A AV DL+GK K YVGRAQKK ER EL+ Sbjct: 227 SVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR 286 Query: 411 KFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGF 590 +FE+ + + +Y+KNLD+T++DEKL+E F+ FG+I+ KVM + G +G G Sbjct: 287 RFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGV 345 Query: 591 VAFKSADDASRALAEMN 641 V F S ++A++A+ EMN Sbjct: 346 VCFSSFEEATKAVDEMN 362 Score = 109 bits (272), Expect = 8e-24 Identities = 58/164 (35%), Positives = 102/164 (62%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDL 329 N+++KNL ++ L +F FG I S V+ D +G SK + +V+F+S A A+ + Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 NG + ++++ YVGR + ER E++ + D+ TN+++KN+ D +DDEKL+ Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLK 216 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ Sbjct: 217 ELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Score = 71.2 bits (173), Expect = 2e-12 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC-FGFVNFESPDEAALAVQDL 329 +YV +L TED L + F G + + RD RS +G+VNF P +A A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 N + K + + +Q + K N+++KNLD ++D+ L Sbjct: 80 NFDLINGKPFRLMWSQP----------------DDRLRKSGVGNIFIKNLDKSIDNRALF 123 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 LF+ FG I SCKV+ D NG S+G +V F S A+RA+ MN Sbjct: 124 YLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 157 bits (396), Expect = 3e-38 Identities = 84/197 (42%), Positives = 126/197 (63%), Gaps = 3/197 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERD---NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTIT 230 G+ +N+++VYVG F +ER + F NV+VKN+ + ++ LKE+F ++G Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTE 226 Query: 231 SVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKE 410 SV V+RD G+SK FGFV +E+ + A AV DL+GK K YVGRAQKK ER EL+ Sbjct: 227 SVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR 286 Query: 411 KFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGF 590 +FE+ + + +Y+KNLD+T++DEKL+E F+ FG+I+ KVM + G +G G Sbjct: 287 RFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGV 345 Query: 591 VAFKSADDASRALAEMN 641 V F S ++A++A+ EMN Sbjct: 346 VCFSSFEEATKAVDEMN 362 Score = 109 bits (272), Expect = 8e-24 Identities = 58/164 (35%), Positives = 102/164 (62%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDL 329 N+++KNL ++ L +F FG I S V+ D +G SK + +V+F+S A A+ + Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 NG + ++++ YVGR + ER E++ + D+ TN+++KN+ D +DDEKL+ Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLK 216 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ Sbjct: 217 ELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Score = 71.2 bits (173), Expect = 2e-12 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC-FGFVNFESPDEAALAVQDL 329 +YV +L TED L + F G + + RD RS +G+VNF P +A A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 N + K + + +Q + K N+++KNLD ++D+ L Sbjct: 80 NFDLINGKPFRLMWSQP----------------DDRLRKSGVGNIFIKNLDKSIDNRALF 123 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 LF+ FG I SCKV+ D NG S+G +V F S A+RA+ MN Sbjct: 124 YLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 157 bits (396), Expect = 3e-38 Identities = 84/197 (42%), Positives = 126/197 (63%), Gaps = 3/197 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERD---NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTIT 230 G+ +N+++VYVG F +ER + F NV+VKN+ + ++ LKE+F ++G Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTE 226 Query: 231 SVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKE 410 SV V+RD G+SK FGFV +E+ + A AV DL+GK K YVGRAQKK ER EL+ Sbjct: 227 SVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR 286 Query: 411 KFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGF 590 +FE+ + + +Y+KNLD+T++DEKL+E F+ FG+I+ KVM + G +G G Sbjct: 287 RFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGV 345 Query: 591 VAFKSADDASRALAEMN 641 V F S ++A++A+ EMN Sbjct: 346 VCFSSFEEATKAVDEMN 362 Score = 109 bits (272), Expect = 8e-24 Identities = 58/164 (35%), Positives = 102/164 (62%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDL 329 N+++KNL ++ L +F FG I S V+ D +G SK + +V+F+S A A+ + Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 NG + ++++ YVGR + ER E++ + D+ TN+++KN+ D +DDEKL+ Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLK 216 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ Sbjct: 217 ELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Score = 71.2 bits (173), Expect = 2e-12 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC-FGFVNFESPDEAALAVQDL 329 +YV +L TED L + F G + + RD RS +G+VNF P +A A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 N + K + + +Q + K N+++KNLD ++D+ L Sbjct: 80 NFDLINGKPFRLMWSQP----------------DDRLRKSGVGNIFIKNLDKSIDNRALF 123 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 LF+ FG I SCKV+ D NG S+G +V F S A+RA+ MN Sbjct: 124 YLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 157 bits (396), Expect = 3e-38 Identities = 84/197 (42%), Positives = 126/197 (63%), Gaps = 3/197 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERD---NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTIT 230 G+ +N+++VYVG F +ER + F NV+VKN+ + ++ LKE+F ++G Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTE 226 Query: 231 SVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKE 410 SV V+RD G+SK FGFV +E+ + A AV DL+GK K YVGRAQKK ER EL+ Sbjct: 227 SVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR 286 Query: 411 KFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGF 590 +FE+ + + +Y+KNLD+T++DEKL+E F+ FG+I+ KVM + G +G G Sbjct: 287 RFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGV 345 Query: 591 VAFKSADDASRALAEMN 641 V F S ++A++A+ EMN Sbjct: 346 VCFSSFEEATKAVDEMN 362 Score = 109 bits (272), Expect = 8e-24 Identities = 58/164 (35%), Positives = 102/164 (62%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDL 329 N+++KNL ++ L +F FG I S V+ D +G SK + +V+F+S A A+ + Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 NG + ++++ YVGR + ER E++ + D+ TN+++KN+ D +DDEKL+ Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLK 216 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ Sbjct: 217 ELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Score = 71.2 bits (173), Expect = 2e-12 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC-FGFVNFESPDEAALAVQDL 329 +YV +L TED L + F G + + RD RS +G+VNF P +A A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 N + K + + +Q + K N+++KNLD ++D+ L Sbjct: 80 NFDLINGKPFRLMWSQP----------------DDRLRKSGVGNIFIKNLDKSIDNRALF 123 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 LF+ FG I SCKV+ D NG S+G +V F S A+RA+ MN Sbjct: 124 YLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 157 bits (396), Expect = 3e-38 Identities = 84/197 (42%), Positives = 126/197 (63%), Gaps = 3/197 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERD---NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTIT 230 G+ +N+++VYVG F +ER + F NV+VKN+ + ++ LKE+F ++G Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTE 226 Query: 231 SVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKE 410 SV V+RD G+SK FGFV +E+ + A AV DL+GK K YVGRAQKK ER EL+ Sbjct: 227 SVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR 286 Query: 411 KFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGF 590 +FE+ + + +Y+KNLD+T++DEKL+E F+ FG+I+ KVM + G +G G Sbjct: 287 RFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGV 345 Query: 591 VAFKSADDASRALAEMN 641 V F S ++A++A+ EMN Sbjct: 346 VCFSSFEEATKAVDEMN 362 Score = 109 bits (272), Expect = 8e-24 Identities = 58/164 (35%), Positives = 102/164 (62%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDL 329 N+++KNL ++ L +F FG I S V+ D +G SK + +V+F+S A A+ + Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 NG + ++++ YVGR + ER E++ + D+ TN+++KN+ D +DDEKL+ Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLK 216 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ Sbjct: 217 ELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Score = 71.2 bits (173), Expect = 2e-12 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC-FGFVNFESPDEAALAVQDL 329 +YV +L TED L + F G + + RD RS +G+VNF P +A A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 N + K + + +Q + K N+++KNLD ++D+ L Sbjct: 80 NFDLINGKPFRLMWSQP----------------DDRLRKSGVGNIFIKNLDKSIDNRALF 123 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 LF+ FG I SCKV+ D NG S+G +V F S A+RA+ MN Sbjct: 124 YLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 157 bits (396), Expect = 3e-38 Identities = 84/197 (42%), Positives = 126/197 (63%), Gaps = 3/197 (1%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERD---NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTIT 230 G+ +N+++VYVG F +ER + F NV+VKN+ + ++ LKE+F ++G Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTE 226 Query: 231 SVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKE 410 SV V+RD G+SK FGFV +E+ + A AV DL+GK K YVGRAQKK ER EL+ Sbjct: 227 SVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR 286 Query: 411 KFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGF 590 +FE+ + + +Y+KNLD+T++DEKL+E F+ FG+I+ KVM + G +G G Sbjct: 287 RFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGV 345 Query: 591 VAFKSADDASRALAEMN 641 V F S ++A++A+ EMN Sbjct: 346 VCFSSFEEATKAVDEMN 362 Score = 109 bits (272), Expect = 8e-24 Identities = 58/164 (35%), Positives = 102/164 (62%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDL 329 N+++KNL ++ L +F FG I S V+ D +G SK + +V+F+S A A+ + Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 NG + ++++ YVGR + ER E++ + D+ TN+++KN+ D +DDEKL+ Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLK 216 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ Sbjct: 217 ELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260 Score = 71.2 bits (173), Expect = 2e-12 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC-FGFVNFESPDEAALAVQDL 329 +YV +L TED L + F G + + RD RS +G+VNF P +A A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 N + K + + +Q + K N+++KNLD ++D+ L Sbjct: 80 NFDLINGKPFRLMWSQP----------------DDRLRKSGVGNIFIKNLDKSIDNRALF 123 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 LF+ FG I SCKV+ D NG S+G +V F S A+RA+ MN Sbjct: 124 YLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 151 bits (381), Expect = 2e-36 Identities = 77/188 (40%), Positives = 125/188 (66%) Frame = +3 Query: 66 LMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVM 245 ++ DK++YVG F++K +R K+ N+Y+KNL +ED L+E F +FG I S+ + Sbjct: 176 IVADKEIYVGKFMKKTDRVKP--EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIA 233 Query: 246 RDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKN 425 +D + + + FVNF++P++A A + +NG KF K YVGRAQKK+ERE L+E+F++ Sbjct: 234 KDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEK 293 Query: 426 LQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKS 605 +E + +N+Y+KN++ V +E+LR+ F++ GTITS K+M D G S+G GFV F + Sbjct: 294 HEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFST 353 Query: 606 ADDASRAL 629 ++A A+ Sbjct: 354 PEEAIDAV 361 Score = 126 bits (316), Expect = 6e-29 Identities = 81/193 (41%), Positives = 109/193 (56%), Gaps = 1/193 (0%) Frame = +3 Query: 66 LMNDKKVYVGPFVRKQE-RDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVV 242 L+N K + V VR + R N G NV+VKNL E+ T L+++F KFG I S V Sbjct: 89 LLNGKMIRVMWSVRAPDARRNGVG-----NVFVKNLPESVTNAVLQDMFKKFGNIVSCKV 143 Query: 243 MRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEK 422 DG+S+ +GFV FE D A A+Q LN +DKE YVG+ KK++R ++ +EK+ Sbjct: 144 ATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR-VKPEEKY-- 200 Query: 423 NLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFK 602 TNLY+KNLD V ++ LRE FAEFG I S + +D N RG FV F Sbjct: 201 -----------TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFD 249 Query: 603 SADDASRALAEMN 641 + +DA RA +N Sbjct: 250 NPEDARRAAETVN 262 Score = 88.2 bits (217), Expect = 2e-17 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 12/136 (8%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDN------------SPGSVKFNNVYVKNLAETTTEDDLKE 203 G K +YVG +K ER+ K +N+YVKN+ TE++L++ Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322 Query: 204 IFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKK 383 F + GTITS +M D G+SK FGFV F +P+EA AV+ +G+ F K YV AQKK Sbjct: 323 HFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382 Query: 384 SEREMELKEKFEKNLQ 431 +R+M+L+ +F ++ Sbjct: 383 EDRKMQLQVQFGNRVE 398 Score = 84.0 bits (206), Expect = 4e-16 Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 7/171 (4%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD 326 ++YV +L + TE L + F +F ++TSV + +D GRS C+G+ NF S +A LA++ Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84 Query: 327 LNGKKFSDK----EWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN--TNLYLKNLDDT 488 N + K W V A D +N N+++KNL ++ Sbjct: 85 KNNSLLNGKMIRVMWSV----------------------RAPDARRNGVGNVFVKNLPES 122 Query: 489 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 V + L+++F +FG I SCKV +G SRG GFV F+ D A A+ +N Sbjct: 123 VTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 84.7 bits (208), Expect = 2e-16 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+D+ K +FG G I S ++RD G+S +GFVN+ P++A A+ Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG K K V A+ S ++ NLY+ L T+ +++ Sbjct: 100 LNGLKLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMSQKEM 141 Query: 507 RELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 +LF+++G I + +++ D + G SRG GF+ F +A A+ +N Sbjct: 142 EQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLN 187 Score = 53.9 bits (128), Expect = 4e-07 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 ++V NL+ E L ++FG FG +T+V V+RD + K FGFV + DEAA+A+ L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 NG + ++ V K + Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFESPD 302 S S++ N+YV L +T ++ +++++F ++G I TS +++ G S+ GF+ F+ Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRI 177 Query: 303 EAALAVQDLNGKK 341 EA A++ LNG+K Sbjct: 178 EAEEAIKGLNGQK 190 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALA 632 TNL + L + ++ + LF G I SCK++RD G S G GFV + +DA +A+ Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98 Query: 633 EMN 641 +N Sbjct: 99 TLN 101 Score = 46.2 bits (108), Expect = 8e-05 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 +++ NL D+ L +LF FG +T+ KV+RD + +G GFV + D+A+ A+A + Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 639 N 641 N Sbjct: 346 N 346
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 84.0 bits (206), Expect = 4e-16 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 1/163 (0%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 +YV NL + TED LK+ F G I ++ +M D + ++ + FV + +A +A+Q LN Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 135 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRE 512 GK+ + +++ F+ + D + NL++ +L+ VDDE LR Sbjct: 136 GKQIEN-------------NIVKINWAFQSQQSSSDDTF---NLFVGDLNVNVDDETLRN 179 Query: 513 LFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 F +F + S VM D G+SRG GFV+F S DDA A+ M Sbjct: 180 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 222 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/60 (33%), Positives = 33/60 (55%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 LY+ NLD + ++ L++ F G I + K+M D N + FV + + DA+ AL +N Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 135 Score = 40.0 bits (92), Expect = 0.006 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD 326 N++V +L ++ L+ F F + S VM D G S+ +GFV+F S D+A A+ Sbjct: 162 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 221 Query: 327 LNGKKFSDKEWYVGRAQKK---SEREMELKEKFEKNLQEAADKYQNTN 461 + G+ + + + A K+ + + + + N + +Y N N Sbjct: 222 MQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNYGNNNRGGFRQYNNNN 269
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 84.0 bits (206), Expect = 4e-16 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+D+ K +FG G I S ++RD G+S +GFVN+ P++A A+ Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG K K V A+ S ++ NLY+ L T+ +++ Sbjct: 100 LNGLKLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMSQKEM 141 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 +LF+++G I + +++ D G SRG GF+ F +A A+ +N Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187 Score = 53.9 bits (128), Expect = 4e-07 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 ++V NL+ E L ++FG FG +T+V V+RD + K FGFV + DEAA+A+ L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 NG + ++ V K + Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFESPD 302 S S++ N+YV L +T ++ +++++F ++G I TS +++ G S+ GF+ F+ Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177 Query: 303 EAALAVQDLNGKK 341 EA A++ LNG+K Sbjct: 178 EAEEAIKGLNGQK 190 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALA 632 TNL + L + ++ + LF G I SCK++RD G S G GFV + +DA +A+ Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98 Query: 633 EMN 641 +N Sbjct: 99 TLN 101 Score = 46.2 bits (108), Expect = 8e-05 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 +++ NL D+ L +LF FG +T+ KV+RD + +G GFV + D+A+ A+A + Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 639 N 641 N Sbjct: 346 N 346
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 83.2 bits (204), Expect = 6e-16 Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 5/177 (2%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFV 284 K+ER + S + +++ L TTED+L+E FGK+GT+T + +M+D GRS+ FGF+ Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205 Query: 285 NFESP---DEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 +FE P DE L+GK K RA + E++ + Sbjct: 206 SFEKPSSVDEVVKTQHILDGKVIDPK-----RAIPRDEQD------------------KT 242 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASR 623 +++ + V ++ E F+++GTI ++M D + G SRG GFV + SAD R Sbjct: 243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 299
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 81.3 bits (199), Expect = 2e-15 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+++LK +FG G I S ++RD G+S +GFVN+ P +A A+ Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG + K V A+ S ++ NLY+ L T+ ++L Sbjct: 100 LNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKEL 141 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 +LF+++G I + +++ D G SRG GF+ F +A A+ +N Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187 Score = 68.2 bits (165), Expect = 2e-11 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 49/221 (22%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFESPD 302 S S++ N+YV L +T T+ +L+++F ++G I TS +++ G S+ GF+ F+ Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177 Query: 303 EAALAVQDLNGK-----------KFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 EA A++ LNG+ KF++ S+ ++ L + A ++ Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 237 Query: 450 QNTNL------------------------------------YLKNLDDTVDDEKLRELFA 521 + NL ++ NL D+ L ++F Sbjct: 238 RLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFG 297 Query: 522 EFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAEMN 641 FG +T+ KV+RD N +G GFV + D+A+ A+A +N Sbjct: 298 PFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338 Score = 57.4 bits (137), Expect = 4e-08 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 ++V NLA E L ++FG FG +T+V V+RD + K FGFV + DEAA+A+ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 NG + D+ V K+ + Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALA 632 TNL + L + E+L+ LF G I SCK++RD G S G GFV + DA +A+ Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 633 EMN 641 +N Sbjct: 99 TLN 101
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 81.3 bits (199), Expect = 2e-15 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+++LK +FG G I S ++RD G+S +GFVN+ P +A A+ Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG + K V A+ S ++ NLY+ L T+ ++L Sbjct: 100 LNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKEL 141 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 +LF+++G I + +++ D G SRG GF+ F +A A+ +N Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187 Score = 68.2 bits (165), Expect = 2e-11 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 49/221 (22%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFESPD 302 S S++ N+YV L +T T+ +L+++F ++G I TS +++ G S+ GF+ F+ Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177 Query: 303 EAALAVQDLNGK-----------KFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 EA A++ LNG+ KF++ S+ ++ L + A ++ Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 237 Query: 450 QNTNL------------------------------------YLKNLDDTVDDEKLRELFA 521 + NL ++ NL D+ L ++F Sbjct: 238 RLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFG 297 Query: 522 EFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAEMN 641 FG +T+ KV+RD N +G GFV + D+A+ A+A +N Sbjct: 298 PFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338 Score = 57.4 bits (137), Expect = 4e-08 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 ++V NLA E L ++FG FG +T+V V+RD + K FGFV + DEAA+A+ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 NG + D+ V K+ + Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALA 632 TNL + L + E+L+ LF G I SCK++RD G S G GFV + DA +A+ Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 633 EMN 641 +N Sbjct: 99 TLN 101
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 81.3 bits (199), Expect = 2e-15 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 17/192 (8%) Frame = +3 Query: 117 RDNSPGSVKFN-NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-------------- 251 ++ S GS + N+ V L +T TED+++ +F G I SV ++RD Sbjct: 138 QNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAP 197 Query: 252 GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQ 431 G+S +GFVN+ P +A AV LNG + +K V A+ S Sbjct: 198 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSS--------------- 242 Query: 432 EAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNG--ASRGSGFVAFKS 605 D + NLY+ L T+ ++L +FA FG I + ++++++ ++G GF+ F Sbjct: 243 ---DAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDK 299 Query: 606 ADDASRALAEMN 641 ++A+RA+ +N Sbjct: 300 REEATRAIIALN 311 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 +++ NLA T E L ++FG FG + SV +++D + K +GFV+ + DEAA+A++ L Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 330 NGKKFSDKEWYVGRAQKKSE 389 NG ++ V K++ Sbjct: 464 NGYTMGNRVLQVSFKTNKAK 483 Score = 39.7 bits (91), Expect = 0.008 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 +++ NL ++ L +LF FG + S K+++D + +G GFV+ + D+A+ A+ + Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 639 N 641 N Sbjct: 464 N 464
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 81.3 bits (199), Expect = 2e-15 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 17/192 (8%) Frame = +3 Query: 117 RDNSPGSVKFN-NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-------------- 251 ++ S GS + N+ V L +T TED+++ +F G I SV ++RD Sbjct: 174 QNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAP 233 Query: 252 GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQ 431 G+S +GFVN+ P +A AV LNG + +K V A+ S Sbjct: 234 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSS--------------- 278 Query: 432 EAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNG--ASRGSGFVAFKS 605 D + NLY+ L T+ ++L +FA FG I + ++++++ ++G GF+ F Sbjct: 279 ---DAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDK 335 Query: 606 ADDASRALAEMN 641 ++A+RA+ +N Sbjct: 336 REEATRAIIALN 347 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 +++ NLA T E L ++FG FG + SV +++D + K +GFV+ + DEAA+A++ L Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 330 NGKKFSDKEWYVGRAQKKSE 389 NG ++ V K++ Sbjct: 500 NGYTMGNRVLQVSFKTNKAK 519 Score = 39.7 bits (91), Expect = 0.008 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 +++ NL ++ L +LF FG + S K+++D + +G GFV+ + D+A+ A+ + Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 639 N 641 N Sbjct: 500 N 500
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 81.3 bits (199), Expect = 2e-15 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+++LK +FG G I S ++RD G+S +GFVN+ P +A A+ Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG + K V A+ S ++ NLY+ L T+ ++L Sbjct: 100 LNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKEL 141 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 +LF+++G I + +++ D G SRG GF+ F +A A+ +N Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187 Score = 67.8 bits (164), Expect = 3e-11 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 50/222 (22%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFESPD 302 S S++ N+YV L +T T+ +L+++F ++G I TS +++ G S+ GF+ F+ Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177 Query: 303 EAALAVQDLNGKK-----------------------------FSDKEWYVGRAQKKSER- 392 EA A++ LNG+K S Y G ++++R Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 237 Query: 393 --------EMELKEKFEKNLQEAADKYQNTN----------LYLKNLDDTVDDEKLRELF 518 +K +F + N +++ NL D+ L ++F Sbjct: 238 RLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMF 297 Query: 519 AEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAEMN 641 FG +T+ KV+RD N +G GFV + D+A+ A+A +N Sbjct: 298 GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 339 Score = 57.4 bits (137), Expect = 4e-08 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 ++V NLA E L ++FG FG +T+V V+RD + K FGFV + DEAA+A+ L Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 NG + D+ V K+ + Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALA 632 TNL + L + E+L+ LF G I SCK++RD G S G GFV + DA +A+ Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 633 EMN 641 +N Sbjct: 99 TLN 101
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 79.3 bits (194), Expect = 9e-15 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 15/212 (7%) Frame = +3 Query: 51 NSMGMLMNDKKVYVG-----PFVRKQERDNSPGS---------VKFNNVYVKNLAETTTE 188 ++ G N+KK+YV P R ++S G + N+Y++ L TT+ Sbjct: 12 STFGYNKNNKKLYVAQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTD 71 Query: 189 DDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYV 365 DL ++ +G I S + D + K +GFV+F+SP A AV L Sbjct: 72 QDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGV------- 124 Query: 366 GRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSC 545 +AQ ++E + TNLY+ NL ++D+++L + FG + S Sbjct: 125 -QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQELEGMLKPFGQVIST 166 Query: 546 KVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 +++RD++GASRG GF +S + + N Sbjct: 167 RILRDTSGASRGVGFARMESTEKCEAIITHFN 198 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/78 (29%), Positives = 40/78 (51%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFV 284 ++QE+D + N+Y+ NL + E +L+ + FG + S ++RD G S+ GF Sbjct: 130 KQQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFA 182 Query: 285 NFESPDEAALAVQDLNGK 338 ES ++ + NGK Sbjct: 183 RMESTEKCEAIITHFNGK 200
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 79.3 bits (194), Expect = 9e-15 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 1/165 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 N+Y++ L TT+ DL ++ +G I S + D + K +GFV+F+SP A AV Sbjct: 63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSA 122 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 L +AQ ++E + TNLY+ NL ++D+++L Sbjct: 123 LKANGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQEL 157 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + FG + S +V+RDS+GASRG GF +S + + N Sbjct: 158 ENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFN 202 Score = 47.4 bits (111), Expect = 4e-05 Identities = 35/124 (28%), Positives = 55/124 (44%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFV 284 ++QE+D + N+Y+ NL + E +L+ + FG + S V+RD G S+ GF Sbjct: 134 KQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFA 186 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNL 464 ES ++ + NGK ++ S L KF Q+ K QN N Sbjct: 187 RMESTEKCEAVIGHFNGK-------FIKTPPGVSAPTEPLLCKFADGGQK---KRQNPNK 236 Query: 465 YLKN 476 Y+ N Sbjct: 237 YIPN 240
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 79.0 bits (193), Expect = 1e-14 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+++ + +FG G I S ++RD G+S +GFVN+ P +A A+ Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG + K V A+ S ++ NLY+ L T+ ++L Sbjct: 107 LNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKEL 148 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 +LF+++G I + +++ D G SRG GF+ F +A A+ +N Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194 Score = 55.1 bits (131), Expect = 2e-07 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 ++V NL+ + E L ++FG FG + +V V+RD + K FGFV + DEAA+A+ L Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 NG + D+ V K+ + Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379 Score = 50.4 bits (119), Expect = 4e-06 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFESPD 302 S S++ N+YV L +T T+ +L+++F ++G I TS +++ G S+ GF+ F+ Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184 Query: 303 EAALAVQDLNGKK 341 EA A++ LNG+K Sbjct: 185 EAEEAIKGLNGQK 197 Score = 47.0 bits (110), Expect = 5e-05 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALA 632 TNL + L + E+ R LF G I SCK++RD G S G GFV + DA +A+ Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105 Query: 633 EMN 641 +N Sbjct: 106 TLN 108 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAEM 638 +++ NL D+ L +LF FG + + KV+RD N +G GFV + D+A+ A+A + Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 639 N 641 N Sbjct: 359 N 359
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 79.0 bits (193), Expect = 1e-14 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+++ + +FG G I S ++RD G+S +GFVN+ P +A A+ Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG + K V A+ S ++ NLY+ L T+ ++L Sbjct: 112 LNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKEL 153 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 +LF+++G I + +++ D G SRG GF+ F +A A+ +N Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199 Score = 55.1 bits (131), Expect = 2e-07 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 ++V NL+ + E L ++FG FG + +V V+RD + K FGFV + DEAA+A+ L Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 NG + D+ V K+ + Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384 Score = 50.4 bits (119), Expect = 4e-06 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFESPD 302 S S++ N+YV L +T T+ +L+++F ++G I TS +++ G S+ GF+ F+ Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189 Query: 303 EAALAVQDLNGKK 341 EA A++ LNG+K Sbjct: 190 EAEEAIKGLNGQK 202 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSAD 611 AA TNL + L + E+ R LF G I SCK++RD G S G GFV + Sbjct: 44 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103 Query: 612 DASRALAEMN 641 DA +A+ +N Sbjct: 104 DAEKAINTLN 113 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAEM 638 +++ NL D+ L +LF FG + + KV+RD N +G GFV + D+A+ A+A + Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 639 N 641 N Sbjct: 364 N 364
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 79.0 bits (193), Expect = 1e-14 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+++ + +FG G I S ++RD G+S +GFVN+ P +A A+ Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG + K V A+ S ++ NLY+ L T+ ++L Sbjct: 100 LNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKEL 141 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 +LF+++G I + +++ D G SRG GF+ F +A A+ +N Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187 Score = 55.1 bits (131), Expect = 2e-07 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 ++V NL+ + E L ++FG FG + +V V+RD + K FGFV + DEAA+A+ L Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 NG + D+ V K+ + Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372 Score = 50.4 bits (119), Expect = 4e-06 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFESPD 302 S S++ N+YV L +T T+ +L+++F ++G I TS +++ G S+ GF+ F+ Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177 Query: 303 EAALAVQDLNGKK 341 EA A++ LNG+K Sbjct: 178 EAEEAIKGLNGQK 190 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSAD 611 AA TNL + L + E+ R LF G I SCK++RD G S G GFV + Sbjct: 32 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91 Query: 612 DASRALAEMN 641 DA +A+ +N Sbjct: 92 DAEKAINTLN 101 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAEM 638 +++ NL D+ L +LF FG + + KV+RD N +G GFV + D+A+ A+A + Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 639 N 641 N Sbjct: 352 N 352
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 78.6 bits (192), Expect = 1e-14 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQD 326 N+ L + T+++LK +FG G I S ++RD G+S +GFVN+ P +A A+ Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG + K V A+ S ++ NLY+ L T+ ++L Sbjct: 100 LNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKEL 141 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 +LF+++G I + +++ D G SRG GF+ F +A A+ +N Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187 Score = 68.2 bits (165), Expect = 2e-11 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 49/221 (22%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFESPD 302 S S++ N+YV L +T T+ +L+++F ++G I TS +++ G S+ GF+ F+ Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177 Query: 303 EAALAVQDLNGK-----------KFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 EA A++ LNG+ KF++ S+ ++ L + A ++ Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 237 Query: 450 QNTNL------------------------------------YLKNLDDTVDDEKLRELFA 521 + NL ++ NL D+ L ++F Sbjct: 238 RLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFG 297 Query: 522 EFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAEMN 641 FG +T+ KV+RD N +G GFV + D+A+ A+A +N Sbjct: 298 PFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338 Score = 57.4 bits (137), Expect = 4e-08 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 ++V NLA E L ++FG FG +T+V V+RD + K FGFV + DEAA+A+ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 NG + D+ V K+ + Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALA 632 TNL L + E+L+ LF G I SCK++RD G S G GFV + DA +A+ Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 633 EMN 641 +N Sbjct: 99 TLN 101
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 77.8 bits (190), Expect = 3e-14 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 4/182 (2%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFV 284 K+ER S SV+ +YV NL + T L EIF + GT+ +V ++ D RS+ F FV Sbjct: 102 KEERVESE-SVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFV 160 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVG--RAQKKSEREMELKEKFEKNLQEAADKYQNT 458 S +EA A++ +G + + V + ERE+ + K Q D Sbjct: 161 TMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREV-MSAKIRSTYQGFVDSPH-- 217 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 LY+ NL + + LR+ FA+ S KV+ D S+G SRG GF+ F SA+ + AL Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 636 MN 641 MN Sbjct: 278 MN 279 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Frame = +3 Query: 375 QKKSEREMELKEKFEKNLQEAADKYQNTN-----LYLKNLDDTVDDEKLRELFAEFGTIT 539 Q+ E E+ L + E+ ++E ++ ++ + LY+ NL ++ +L E+FAE GT+ Sbjct: 82 QEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVA 141 Query: 540 SCKVMRDS-NGASRGSGFVAFKSADDASRAL 629 + +++ D SRG FV S ++A A+ Sbjct: 142 NVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 77.4 bits (189), Expect = 3e-14 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 2/172 (1%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEA 308 G + N+ V L + T+D+L+ +F G + S ++RD G S +GFVN+ + +A Sbjct: 15 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74 Query: 309 ALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDT 488 A+ LNG + K V A+ SE ++ NLY+ L T Sbjct: 75 ERAINTLNGLRLQSKTIKVSYARPSSE------------------VIKDANLYISGLPRT 116 Query: 489 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 + + + ++F+ FG I + +V+ D + G SRG F+ F +A A+ N Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN 168 Score = 61.6 bits (148), Expect = 2e-09 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 36/204 (17%) Frame = +3 Query: 138 VKFNNVYVKNLAETTTEDDLKEIFGKFG-TITSVVVMRDGDGRSKCFGFVNFESPDEAAL 314 +K N+Y+ L T T+ D++++F +FG I S V++ G S+ F+ F+ EA Sbjct: 103 IKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162 Query: 315 AVQDLNGKK---FSDKEWYVGRAQKKSEREMEL--------KEKFEKNLQEAADKYQNTN 461 A+ NG K S+ A + + L +F + A +++ + Sbjct: 163 AITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSP 222 Query: 462 -----------------------LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-G 569 +++ NL D+ L ++F FG +T+ KV+RD N Sbjct: 223 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 282 Query: 570 ASRGSGFVAFKSADDASRALAEMN 641 +G GFV + ++A+ A+A +N Sbjct: 283 KCKGFGFVTMTNYEEAAMAIASLN 306 Score = 57.0 bits (136), Expect = 5e-08 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Frame = +3 Query: 123 NSPGSVKFN-NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFES 296 N PG+ +++ NL + E L ++FG FG +T+V V+RD + K FGFV + Sbjct: 235 NVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 294 Query: 297 PDEAALAVQDLNGKKFSDKEWYVGRAQKKSER 392 +EAA+A+ LNG + DK V KS + Sbjct: 295 YEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 77.0 bits (188), Expect = 4e-14 Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 2/180 (1%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFV 284 ++ER+ SP ++V NL + L E+F + G + V V+ D GRS+ FGFV Sbjct: 78 EEERNFSPDL----KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 133 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNL 464 S +E A Q NG + + V +RE F + + + Sbjct: 134 TMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRE---NSSFRGGSRGGGSFDSSNRV 190 Query: 465 YLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 Y+ NL VD + L LF+E G + KV+ D +G SRG GFV + SA++ + A+ ++ Sbjct: 191 YVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLD 250 Score = 52.8 bits (125), Expect = 9e-07 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%) Frame = +3 Query: 81 KVYVGPFVRKQE----RDNSPGSVKF---NNVYVKNLAETTTEDDLKEIFGKFGTITSVV 239 +V GP K+E R S G F N VYV NLA +D L+ +F + G + Sbjct: 159 RVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAK 218 Query: 240 VMRDGD-GRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSER 392 V+ D D GRS+ FGFV + S +E A++ L+G + + V A+ + R Sbjct: 219 VVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 270
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 76.6 bits (187), Expect = 6e-14 Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 13/210 (6%) Frame = +3 Query: 51 NSMGMLMNDKKVYVG-------PFVRKQERDNSPGS-----VKFNNVYVKNLAETTTEDD 194 ++ G N+KK YV P ++S GS + N+Y++ L TT+ D Sbjct: 12 STFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQD 71 Query: 195 LKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGR 371 L ++ +G I S + D + K +GFV+F+SP A AV L + Sbjct: 72 LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--------Q 123 Query: 372 AQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKV 551 AQ ++E + TNLY+ NL ++D+++L + FG + S ++ Sbjct: 124 AQMAKQQEQD-----------------PTNLYISNLPLSMDEQELEGMLKPFGQVISTRI 166 Query: 552 MRDSNGASRGSGFVAFKSADDASRALAEMN 641 +RD++G SRG GF +S + + N Sbjct: 167 LRDTSGTSRGVGFARMESTEKCEAIITHFN 196 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/78 (29%), Positives = 40/78 (51%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFV 284 ++QE+D + N+Y+ NL + E +L+ + FG + S ++RD G S+ GF Sbjct: 128 KQQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA 180 Query: 285 NFESPDEAALAVQDLNGK 338 ES ++ + NGK Sbjct: 181 RMESTEKCEAIITHFNGK 198
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 76.6 bits (187), Expect = 6e-14 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 6/179 (3%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD----GDGRSKCF 275 ++E ++ PG F +KNL TTE+ LKE+F K GT+ S + + G S F Sbjct: 721 EEEEESLPGCTLF----IKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGF 776 Query: 276 GFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 GFV + P++A A++ L G + V +++ ++ + L K ++ K Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARK-----KQVPRKQTT 831 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMR--DSNGASRGSGFVAFKSADDASRA 626 + + ++N+ ++RELF+ FG + + ++ + G RG GFV F + DA RA Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890 Score = 61.6 bits (148), Expect = 2e-09 Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 49/211 (23%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 + VKNL T +L+E FG+FG++ V++ G V F P EA A + L Sbjct: 589 ILVKNLPAGTLAAELQETFGRFGSLGRVLLPEGGTT-----AIVEFLEPLEARKAFRHLA 643 Query: 333 GKKFSDKEWYVGRA----------QKK--------------------------------- 383 KF Y+ A QKK Sbjct: 644 YSKFHHVPLYLEWAPVGVFSSAAPQKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTE 703 Query: 384 --SEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMR 557 ++ E+ E+ +E + L++KNL+ +EKL+E+F++ GT+ SC + + Sbjct: 704 EGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISK 763 Query: 558 DSNGA----SRGSGFVAFKSADDASRALAEM 638 N A S G GFV ++ + A +AL ++ Sbjct: 764 KKNKAGVLLSMGFGFVEYRKPEQAQKALKQL 794 Score = 53.5 bits (127), Expect = 5e-07 Identities = 24/62 (38%), Positives = 38/62 (61%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 + L +KNL + + +E+ R+LFA FGT+T C + +G R GF+ FKS ++A +A Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 636 MN 641 N Sbjct: 62 FN 63 Score = 49.3 bits (116), Expect = 1e-05 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 4/133 (3%) Frame = +3 Query: 60 GMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVV 239 G N K + G + + E + + ++V+NL T+TE+DL+++F K+G ++ + Sbjct: 375 GAPKNTTKSWQGRILGENEEEED--LAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELH 432 Query: 240 VMRDG-DGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRA---QKKSEREMELK 407 D + K F F+ F P+ A A +++G+ F + +V + ++ SE L Sbjct: 433 YPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALG 492 Query: 408 EKFEKNLQEAADK 446 K +EA DK Sbjct: 493 SSSYKKKKEAQDK 505 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/68 (35%), Positives = 38/68 (55%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 + + VKNL E+ +++F FGT+T + DG+ + FGF+ F+S +EA A + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 327 LNGKKFSD 350 N K F D Sbjct: 62 FN-KSFID 68 Score = 32.7 bits (73), Expect = 0.93 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Frame = +3 Query: 96 PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMR--DGDGRSK 269 P V + P + + V+N+ +++E+F FG + +V + + G G + Sbjct: 815 PAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHR 874 Query: 270 CFGFVNFESPDEAALAVQDL 329 FGFV+F + +A A L Sbjct: 875 GFGFVDFLTKQDAKRAFNAL 894
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 75.9 bits (185), Expect = 1e-13 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 5/183 (2%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFV 284 ++ER+ SP ++V NL + L E+F + G + V V+ D GRS+ FGFV Sbjct: 78 EEERNFSPDL----KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 133 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRA---QKKSEREMELKEKFEKNLQEAADKYQN 455 S +E A Q NG + + V +K+ F + + Sbjct: 134 TMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSS 193 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALA 632 +Y+ NL VD + L LF+E G + KV+ D +G SRG GFV + SA++ + A+ Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253 Query: 633 EMN 641 ++ Sbjct: 254 SLD 256 Score = 50.8 bits (120), Expect = 3e-06 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +3 Query: 117 RDNSPGSVKF---NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFV 284 R S G F N VYV NLA +D L+ +F + G + V+ D D GRS+ FGFV Sbjct: 181 RGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFV 240 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSER 392 + S +E A++ L+G + + V A+ + R Sbjct: 241 TYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 276
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 75.9 bits (185), Expect = 1e-13 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 1/165 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD 326 N+Y++ L TT+ DL ++ +G I S + D + K +GFV+F+SP A AV Sbjct: 63 NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 122 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 L +AQ ++E + TNLY+ NL ++D+++L Sbjct: 123 LKASGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQEL 157 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + FG + S +++RDS+G SRG GF +S + + N Sbjct: 158 ENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 202 Score = 47.0 bits (110), Expect = 5e-05 Identities = 34/124 (27%), Positives = 55/124 (44%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFV 284 ++QE+D + N+Y+ NL + E +L+ + FG + S ++RD G S+ GF Sbjct: 134 KQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFA 186 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNL 464 ES ++ + NGK ++ S L KF Q+ K QN N Sbjct: 187 RMESTEKCEAVIGHFNGK-------FIKTPPGVSAPTEPLLCKFADGGQK---KRQNPNK 236 Query: 465 YLKN 476 Y+ N Sbjct: 237 YIPN 240
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 75.1 bits (183), Expect = 2e-13 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 2/186 (1%) Frame = +3 Query: 90 VGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRS 266 VG NS + N+ V L + + +L +F G I + +MRD G S Sbjct: 59 VGNMANSTNSLNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYS 118 Query: 267 KCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADK 446 +GFV+F S +A A+ +LNG +K V A+ E+ Sbjct: 119 YGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQ------------------ 160 Query: 447 YQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASR 623 ++TNLY+ NL ++ DE+L +F ++G I ++RD + G RG F+ F ++A Sbjct: 161 LRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQE 220 Query: 624 ALAEMN 641 A++ +N Sbjct: 221 AISALN 226
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 74.3 bits (181), Expect = 3e-13 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 2/177 (1%) Frame = +3 Query: 117 RDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFE 293 RD G N+ V L + T+ +L +F G I + +MRD G S + FV+F Sbjct: 100 RDGHGGGSNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFA 159 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + ++ A++ LNG +K V A+ E ++TNLY+ Sbjct: 160 AETDSQRAIKSLNGITVRNKRLKVSYARPGGE------------------SIKDTNLYVT 201 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 NL T+ D++L +F ++G I ++RD G RG FV F ++A A++ +N Sbjct: 202 NLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 258
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 74.3 bits (181), Expect = 3e-13 Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 6/179 (3%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD----GDGRSKCF 275 ++E + S+ +++KNL +TTE+ LK +F K G I S + + G S F Sbjct: 709 EEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGF 768 Query: 276 GFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 GFV ++ P++A A++ L G + V +++ ++ + K ++ K Sbjct: 769 GFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRK-----KQVPKKQTT 823 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMR--DSNGASRGSGFVAFKSADDASRA 626 + + ++N+ + ++RELF+ FG + + ++ + GA RG GFV F + DA +A Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 882 Score = 58.2 bits (139), Expect = 2e-08 Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 44/206 (21%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 + KNL T +++E F +FG++ V++ G V F P EA A + L Sbjct: 586 ILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG-----ITAIVEFLEPLEARKAFRHLA 640 Query: 333 GKKFSDKEWYV--------GRAQKKSEREME----------------------------- 401 KF Y+ G A +K + + E Sbjct: 641 YSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAEVEQETVLDPEGEKASVEGAEAS 700 Query: 402 ---LKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGA 572 ++E+ E+ +E + L++KNL+ + +E L+ +F++ G I SC + + N A Sbjct: 701 TGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKA 760 Query: 573 ----SRGSGFVAFKSADDASRALAEM 638 S G GFV +K + A +AL ++ Sbjct: 761 GVLLSMGFGFVEYKKPEQAQKALKQL 786 Score = 52.8 bits (125), Expect = 9e-07 Identities = 24/58 (41%), Positives = 37/58 (63%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 + L +KNL + + +E+ R+LFA FGT+T C + +G R GF+ FKS ++A AL Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAAL 59 Score = 47.8 bits (112), Expect = 3e-05 Identities = 28/106 (26%), Positives = 58/106 (54%), Gaps = 3/106 (2%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 ++V+NL+ T++E+DL+++F +G ++ + D + K F FV F P+ A A ++ Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 461 Query: 330 NGKKFSDKEWYV--GRAQKKSEREMELKEKFEKNLQEAADKYQNTN 461 +G+ F + +V +K++ +E K +EA DK +++ Sbjct: 462 DGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKKKKEAMDKANSSS 507 Score = 43.9 bits (102), Expect = 4e-04 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 + + VKNL E+ +++F FGT+T + DG+ + FGF+ F+S +EA A+ Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAAL 59 Score = 34.3 bits (77), Expect = 0.32 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 12/122 (9%) Frame = +3 Query: 96 PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMR--DGDGRSK 269 P + + P + + V+N+ + +++E+F FG + +V + + G G + Sbjct: 807 PALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHR 866 Query: 270 CFGFVNFESPDEAALAVQ------DLNGKK----FSDKEWYVGRAQKKSEREMELKEKFE 419 FGFV+F + +A A L G++ ++D E V ++K+ R + K + Sbjct: 867 GFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQTLRRKTARHFQEPPKKK 926 Query: 420 KN 425 ++ Sbjct: 927 RS 928
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 73.6 bits (179), Expect = 5e-13 Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 2/168 (1%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEA 308 G + N+ V L + T+++L+ +F G + S ++RD G S +GFVN+ + +A Sbjct: 15 GDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74 Query: 309 ALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDT 488 A+ LNG + K V A+ SE ++ NLY+ L T Sbjct: 75 ERAISTLNGLRLQSKTIKVSYARPSSE------------------VIKDANLYISGLPRT 116 Query: 489 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRAL 629 + + + ++F+ FG I + +V+ D + G SRG F+ F +A A+ Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Score = 58.5 bits (140), Expect = 2e-08 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 36/204 (17%) Frame = +3 Query: 138 VKFNNVYVKNLAETTTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFESPDEAAL 314 +K N+Y+ L T T+ D++++F +FG I S V++ G S+ F+ F+ EA Sbjct: 103 IKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162 Query: 315 AVQDLNGKK---FSDKEWYVGRAQKKSEREMEL--------KEKFEKNLQEAADKYQNTN 461 A+ G K S+ A + M L +F + A +++ + Sbjct: 163 AITSFIGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGPVHHQAQRFRFSP 222 Query: 462 L-----------------------YLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-G 569 + ++ NL D+ L ++F FG +T+ KV+RD N Sbjct: 223 MGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 282 Query: 570 ASRGSGFVAFKSADDASRALAEMN 641 +G GFV + ++++ A+A +N Sbjct: 283 KCKGFGFVTMTNYEESAMAIASLN 306 Score = 55.8 bits (133), Expect = 1e-07 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Frame = +3 Query: 123 NSPGSVKFN-NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFES 296 N PG+ +++ NL + E L ++FG FG +T+V V+RD + K FGFV + Sbjct: 235 NVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 294 Query: 297 PDEAALAVQDLNGKKFSDKEWYVGRAQKKSER 392 +E+A+A+ LNG + DK V KS + Sbjct: 295 YEESAMAIASLNGYRLGDKILQVSFKTNKSHK 326 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALA 632 TNL + L + E+LR LF+ G + S K++RD G S G GFV + +A DA RA++ Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79 Query: 633 EMN 641 +N Sbjct: 80 TLN 82
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 73.2 bits (178), Expect = 6e-13 Identities = 45/165 (27%), Positives = 80/165 (48%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 N+++V NL +T +DL E F + G + ++ G + G V F + D+ A++ Sbjct: 136 NSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTNSDDVDRAIRQ 194 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 +G F D++ +V Q +KE+ + E + + +KNL +V+ + L Sbjct: 195 YDGAFFMDRKIFV--RQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQAL 252 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 +++F E G + V D +G S GSG V+F D RA+ + N Sbjct: 253 KDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYN 297 Score = 57.4 bits (137), Expect = 4e-08 Identities = 46/181 (25%), Positives = 71/181 (39%), Gaps = 14/181 (7%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 K + V VKNL + LK+IF + G + V DGDG S G V+F + A+ Sbjct: 234 KTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAI 293 Query: 321 QDLNGKKFSDKEWYVGRAQKKSERE--------------MELKEKFEKNLQEAADKYQNT 458 + NG V + E KF +N+ ++ N Sbjct: 294 EKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVGGGER--NR 351 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 +Y NL + L +LF G + + ++ DS GA G V + + DDA + + Sbjct: 352 LIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIERL 411 Query: 639 N 641 N Sbjct: 412 N 412
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 72.8 bits (177), Expect = 8e-13 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 2/165 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 +YV N+ D+L+ I + G I VM D GRS+ FGFV ++ ++A ++ L Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 N + ++ V +K E M++ ++ Q Y+ +Y+ NL TV +E L+ Sbjct: 146 NDTEIGGRKIKVNITEKPLE-GMDIATTQAEDSQFVESPYK---VYIGNLAKTVTNELLK 201 Query: 510 ELFAEFGTITSCKVMR-DSNGASRGSGFVAFKSADDASRALAEMN 641 + F+E G + KV R S G GFV+F S ++ A+ +N Sbjct: 202 DFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALN 246 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 VY+ NLA+T T + LK+ F + G + V R G +S FGFV+F S +E A+Q L Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQAL 245 Query: 330 NGKKFSDKEWYVGRA 374 N ++ V +A Sbjct: 246 NNSVLEGQKIRVNKA 260
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 72.4 bits (176), Expect = 1e-12 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGT--ITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 ++V NL + L IF G I V+ R+ D RS+ FGFV + +EA AV+ Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETD-RSRGFGFVTMSTVEEAEKAVEL 115 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG ++ V +A + E + FE + + +Y+ NL VD +L Sbjct: 116 LNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCR----------VYVGNLPWDVDTSRL 165 Query: 507 RELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 +LF+E G + S +V+ D G SRG GFV S + + A+A ++ Sbjct: 166 EQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALD 211 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 VYV NL L+++F + G + S V+ D + GRS+ FGFV S E A+ L Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 210 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 +G+ + V A+++ R Sbjct: 211 DGQTLDGRAVRVNVAEERPRR 231
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 72.4 bits (176), Expect = 1e-12 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+ +L +F G I + +M+D G S + FV+F S +A A++ Sbjct: 86 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKS 145 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG +K V A+ E ++TNLY+ NL T+ D++L Sbjct: 146 LNGVTVRNKRLKVSYARPGGE------------------SIKDTNLYVTNLPRTITDDEL 187 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 ++F ++G I ++RD G RG FV F ++A A++ +N Sbjct: 188 EKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 233 Score = 55.1 bits (131), Expect = 2e-07 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAA 311 S+K N+YV NL T T+D+L++IFGK+G I ++RD G+ + FV F +EA Sbjct: 167 SIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQ 226 Query: 312 LAVQDLN 332 A+ LN Sbjct: 227 EAISALN 233 Score = 42.7 bits (99), Expect = 0.001 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALA 632 TNL + L + D +L LF G I +C++M+D G S G FV F S DA A+ Sbjct: 85 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK 144 Query: 633 EMN 641 +N Sbjct: 145 SLN 147
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 71.6 bits (174), Expect = 2e-12 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 3/166 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGT--ITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 ++V NL + L +F + G I V+ RD D +S+ FGFV + +EA AV+ Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTD-QSRGFGFVTMSTVEEAEKAVEM 196 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 N + + V +A ++ ER FE Q+ +Y+ N+ +DD +L Sbjct: 197 YNRYDVNGRLLTVNKAARRGERPERPPRTFE----------QSYRIYVGNIPWGIDDARL 246 Query: 507 RELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 +LF+E G + S +V+ D G SRG GFV S + S A+A ++ Sbjct: 247 EQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLD 292 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Frame = +3 Query: 69 MNDKKVYVGPFVRKQERDNSPGSV--KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVV 242 +N + + V R+ ER P + +YV N+ + L+++F + G + S V Sbjct: 202 VNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARV 261 Query: 243 MRDGD-GRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSER 392 + D + GRS+ FGFV S E + A+ +L+G+ + V A+ +S R Sbjct: 262 VYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 71.2 bits (173), Expect = 2e-12 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 2/171 (1%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAA 311 +V N+ V L + T+ +L +F G I + +M+D G S + FV+F S +A Sbjct: 98 AVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQ 157 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTV 491 A++ +NG +K V A+ E ++TNLY+ NL T+ Sbjct: 158 NAIKTVNGITVRNKRLKVSYARPGGE------------------SIKDTNLYVTNLPRTI 199 Query: 492 DDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 D++L ++F ++G I ++RD G RG FV F ++A A++ +N Sbjct: 200 TDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 70.5 bits (171), Expect = 4e-12 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 6/179 (3%) Frame = +3 Query: 111 QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVN 287 +E D+ +++ LA TTE++LK +G++G + VVVMRD RS+ FGF+ Sbjct: 20 REEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFIT 79 Query: 288 FESPDEAALAVQD----LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 + A ++ ++GK K RA + ERE E N+ Sbjct: 80 YTKSLMVDRAQENRPHIIDGKTVEAK-----RALPRPERESR-----ETNISV------- 122 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRAL 629 L++ L D D+E LRE F +FG + S K++ D + G RG FV F D +A+ Sbjct: 123 KKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 41.2 bits (95), Expect = 0.003 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Frame = +3 Query: 66 LMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVM 245 +++ K V + + ER++ ++ ++V L + E+ L+E F +FG + SV ++ Sbjct: 96 IIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLL 155 Query: 246 RD-GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK 413 D G+ + F FV F+ D A+ K+ + K YV KKS ++ KEK Sbjct: 156 TDKTTGKRRGFAFVEFDDYDAVDKAILK---KQHAIK--YVHVDVKKSIYNLDKKEK 207
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 70.5 bits (171), Expect = 4e-12 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 2/186 (1%) Frame = +3 Query: 90 VGPFVRKQ-ERDNSPGSVKF-NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR 263 +GP V + ER F N+++V+NL T +DLKE+FG G + ++ G Sbjct: 101 LGPIVERDLERQFDATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADII-TSKGH 159 Query: 264 SKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAAD 443 + G V F + A+ +G F D++ V + E E +K + +E + Sbjct: 160 HRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATR--EEIDN 217 Query: 444 KYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASR 623 ++ +++ NL +++ + L+++F E G + V D NG SRG G V + + D+ R Sbjct: 218 GFE---VFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIR 274 Query: 624 ALAEMN 641 A+ N Sbjct: 275 AIDTFN 280 Score = 50.1 bits (118), Expect = 6e-06 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 27/190 (14%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 V++ NL + LK++F + G + V D +G S+ FG V + + DE A+ N Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFN 280 Query: 333 GKKFSDKEWYV--GRAQKK--SEREMELKEKFEK--------------NLQEAADKY--- 449 G + + V GR K+ ++R + +E E ++ E A K+ Sbjct: 281 GMEVEGRVLEVREGRFNKRKNNDRYNQRREDLEDTRGTEPGLAQDAAVHIDETAAKFTEG 340 Query: 450 ------QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSAD 611 +N +Y NL + L +LF G I + ++ NG G V +++ Sbjct: 341 VNPGGDRNCFIYCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYENLV 400 Query: 612 DASRALAEMN 641 DA + ++N Sbjct: 401 DADFCIQKLN 410 Score = 39.3 bits (90), Expect = 0.010 Identities = 24/105 (22%), Positives = 44/105 (41%) Frame = +3 Query: 66 LMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVM 245 L D V++ K +PG + +Y NL +T DL ++FG G I + + Sbjct: 322 LAQDAAVHIDETAAKFTEGVNPGGDRNCFIYCSNLPFSTARSDLFDLFGPIGKINNAELK 381 Query: 246 RDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQK 380 +G+ V +E+ +A +Q LN + + A++ Sbjct: 382 PQENGQPTGVAVVEYENLVDADFCIQKLNNYNYGGCSLQISYARR 426
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 70.1 bits (170), Expect = 5e-12 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 3/179 (1%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGT--ITSVVVMRDGDGRSKCFGFVN 287 ER P + ++V NLA L +F + GT I V+ R+ D +S+ FGFV Sbjct: 139 ERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETD-QSRGFGFVT 197 Query: 288 FESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLY 467 S DEA AV+ N + + V +A + R +E + +Y Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFR----------VY 247 Query: 468 LKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 + NL VD+ +L +LF+E G + +V+ D G SRG GFV D+ + A++ ++ Sbjct: 248 VGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALD 306 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 VYV NL L+++F + G + V+ D + GRS+ FGFV DE A+ L Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 +G+ + V A+++ R Sbjct: 306 DGQNLEGRAIRVNVAEERPPR 326
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 69.7 bits (169), Expect = 7e-12 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 3/181 (1%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFG 278 + K E N P ++ +++ L+ TT++ L+E F ++GT+T VVMRD + RS+ FG Sbjct: 1 MHKSEAPNEPEQLR--KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFG 58 Query: 279 FVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT 458 FV + S DE A+ R K R +E K + + Sbjct: 59 FVTYLSTDEVDAAM--------------TARPHKVDGRVVEPKRAVSREDSSRPGAHLTV 104 Query: 459 -NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALA 632 +++ + + +++ LRE F ++G I ++M D +G RG FV F+ D + + Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVI 164 Query: 633 E 635 + Sbjct: 165 Q 165
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 69.7 bits (169), Expect = 7e-12 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+ +L +F G I + +MRD G S + FV+F S ++ A++ Sbjct: 128 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 187 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG +K V A+ E ++TNLY+ NL T+ D++L Sbjct: 188 LNGITVRNKRLKVSYARPGGE------------------SIKDTNLYVTNLPRTITDDQL 229 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 +F ++G+I ++RD G RG FV + ++A A++ +N Sbjct: 230 DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 275 Score = 53.1 bits (126), Expect = 7e-07 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAA 311 S+K N+YV NL T T+D L IFGK+G+I ++RD GR + FV + +EA Sbjct: 209 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 268 Query: 312 LAVQDLN 332 A+ LN Sbjct: 269 EAISALN 275 Score = 47.0 bits (110), Expect = 5e-05 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +3 Query: 453 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRAL 629 NTNL + L + D +L LF G I +C++MRD G S G FV F S D+ RA+ Sbjct: 126 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAI 185 Query: 630 AEMN 641 +N Sbjct: 186 KVLN 189
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 69.7 bits (169), Expect = 7e-12 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 2/166 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 N+ V L + T+ +L +F G I + +MRD G S + FV+F S ++ A++ Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 LNG +K V A+ E ++TNLY+ NL T+ D++L Sbjct: 186 LNGITVRNKRLKVSYARPGGE------------------SIKDTNLYVTNLPRTITDDQL 227 Query: 507 RELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 +F ++G+I ++RD G RG FV + ++A A++ +N Sbjct: 228 DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273 Score = 53.1 bits (126), Expect = 7e-07 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAA 311 S+K N+YV NL T T+D L IFGK+G+I ++RD GR + FV + +EA Sbjct: 207 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 266 Query: 312 LAVQDLN 332 A+ LN Sbjct: 267 EAISALN 273 Score = 47.0 bits (110), Expect = 5e-05 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +3 Query: 453 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRAL 629 NTNL + L + D +L LF G I +C++MRD G S G FV F S D+ RA+ Sbjct: 124 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAI 183 Query: 630 AEMN 641 +N Sbjct: 184 KVLN 187
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 68.6 bits (166), Expect = 2e-11 Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 9/185 (4%) Frame = +3 Query: 108 KQERDNSPGSVKFNN---VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCF 275 K E + S++ N ++V L TT+D ++E + +FG IT ++VMRD RS+ F Sbjct: 7 KAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGF 66 Query: 276 GFVNFESPDEAALAVQD----LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAAD 443 GFV F E A++ ++GK K RA + + K + E N+ Sbjct: 67 GFVTFSGKTEVDAAMKQRPHIIDGKTVDPK-----RAVPRDD-----KNRSESNV----- 111 Query: 444 KYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDAS 620 LY+ + + ++ L E F ++GT+T +++ D + RG GFV F D Sbjct: 112 --STKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVD 169 Query: 621 RALAE 635 + + + Sbjct: 170 QCVLQ 174 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTIT-SVVVMRDGDGRSKCFG 278 V + +++ S +V +YV + E TED L E F K+GT+T S +++ + + FG Sbjct: 99 VPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFG 158 Query: 279 FVNFESPD 302 FV F+ D Sbjct: 159 FVTFDDHD 166
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 68.6 bits (166), Expect = 2e-11 Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 2/165 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 VYV +++ ED ++ F FG I S+ + D + K F FV +E P+ A LA++ + Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 NG + VGR + + + E +QE A + +Y+ ++ + +E ++ Sbjct: 192 NGALMGGRNIKVGRPSNMPQAQQVIDE-----VQEEAKSF--NRIYVASIHPDLSEEDIK 244 Query: 510 ELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAEMN 641 +F FG I CK+ + ++ +G GF+ + + A+A MN Sbjct: 245 SVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMN 289 Score = 33.9 bits (76), Expect = 0.42 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 9/114 (7%) Frame = +3 Query: 60 GMLMNDKKVYVG-----PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGT 224 G LM + + VG P ++ + + FN +YV ++ +E+D+K +F FG Sbjct: 193 GALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGP 252 Query: 225 ITSVVVMRDGDGRS----KCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRA 374 I + + G S K +GF+ + + A+ +N + VGR+ Sbjct: 253 I---LYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 67.8 bits (164), Expect = 3e-11 Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 7/204 (3%) Frame = +3 Query: 51 NSMGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTIT 230 N +L + KV Q++D S +V+V +L+ T +D+K F FG I+ Sbjct: 86 NGRKILGKEVKVNWATTPSSQKKDTS----NHFHVFVGDLSPEITTEDIKSAFAPFGKIS 141 Query: 231 SVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQK-----KSER 392 V++D G+SK +GFV+F + +A A+ + G+ ++ A + KS + Sbjct: 142 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ 201 Query: 393 EMELKE-KFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNG 569 E K+ +FE + +++ K N +Y + + D+ +R+ F+ FG I +V + Sbjct: 202 ETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--- 256 Query: 570 ASRGSGFVAFKSADDASRALAEMN 641 +G FV F + + A+ A+ +N Sbjct: 257 --KGYSFVRFSTHESAAHAIVSVN 278 Score = 33.5 bits (75), Expect = 0.55 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 16/83 (19%) Frame = +3 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSG----------- 587 D Q LY+ NL V + + +LF++ G SCK++ + + R + Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63 Query: 588 -----FVAFKSADDASRALAEMN 641 FV F DA+ ALA MN Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMN 86
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 67.4 bits (163), Expect = 3e-11 Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 7/204 (3%) Frame = +3 Query: 51 NSMGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTIT 230 N +L + KV Q++D S +V+V +L+ T +D+K F FG I+ Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTS----NHFHVFVGDLSPEITTEDIKSAFAPFGKIS 124 Query: 231 SVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQK-----KSER 392 V++D G+SK +GFV+F + +A A+ + G+ ++ A + KS + Sbjct: 125 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ 184 Query: 393 EMELKE-KFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNG 569 E K+ +FE + +++ K N +Y + + D+ +R+ F+ FG I +V + Sbjct: 185 ENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--- 239 Query: 570 ASRGSGFVAFKSADDASRALAEMN 641 +G FV F + + A+ A+ +N Sbjct: 240 --KGYSFVRFSTHESAAHAIVSVN 261 Score = 36.2 bits (82), Expect = 0.084 Identities = 23/67 (34%), Positives = 36/67 (53%) Frame = +3 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDAS 620 D Q LY+ NL V + + +LF++ G SCK++ + + ++ FV F DA+ Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HTSNDPYCFVEFYEHRDAA 62 Query: 621 RALAEMN 641 ALA MN Sbjct: 63 AALAAMN 69
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 67.4 bits (163), Expect = 3e-11 Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 12/209 (5%) Frame = +3 Query: 51 NSMGMLMNDKKVYVGPFVRKQERDNSPGSVKFN-------NVYVKNLAETTTEDDLKEIF 209 N ++ + KV Q++D S +V +V+V +L+ T +D+K F Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126 Query: 210 GKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKS 386 FG I+ V++D G+SK +GFV+F + +A A+Q + G+ ++ A +K Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186 Query: 387 EREMELKEKFEKNLQ----EAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVM 554 E K L + N +Y + + ++ +R+ F+ FG I +V Sbjct: 187 PAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF 246 Query: 555 RDSNGASRGSGFVAFKSADDASRALAEMN 641 D +G FV F S + A+ A+ +N Sbjct: 247 PD-----KGYSFVRFSSHESAAHAIVSVN 270 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 LY+ NL V + + +LF++ G +CK++ D+ G + FV F A+ ALA MN Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMN 67
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 67.4 bits (163), Expect = 3e-11 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 6/177 (3%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR------SKCF 275 ERD++ ++ ++++V+NL +TT L + F V D + S F Sbjct: 588 ERDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGF 647 Query: 276 GFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 GFV F + D+A A++ ++G+ + V K S R ++ E+ + Q Sbjct: 648 GFVAFRTKDQAQAALKVMDGQVLDAHKISV----KASHRGLDAAEERRREDMAKKAANQG 703 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRA 626 T L +KNL V +++R LF+ +G + + ++ + N +SRG F F +A +A A Sbjct: 704 TKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNA 760 Score = 56.6 bits (135), Expect = 6e-08 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 9/123 (7%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 K + ++++NL+ T TEDD++E F KFG + V V D G SK F + +E P +ALA Sbjct: 306 KTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKP-ASALAA 364 Query: 321 QDLNGKKFSDKEWYVGRAQKKSEREME---------LKEKFEKNLQEAADKYQNTNLYLK 473 +G F + ++ A K E +++ K++ + EAA N N Sbjct: 365 FQTDGTVFQGRIVHILPAAAKRENKLDEFALSKLPLKKQQLLRKKAEAASSTFNWNSLFM 424 Query: 474 NLD 482 + D Sbjct: 425 SQD 427 Score = 45.1 bits (105), Expect = 2e-04 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 19/182 (10%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 + VKN+ TT E+ L+ +F + GT+ V++ G V F P + A Sbjct: 491 ILVKNIKNTTIEE-LRTLFEEHGTVLRVLMPPSGT-----IAIVQFAQPVQCRTAFARKA 544 Query: 333 GKKFSDKEWYVGRAQK----------KSEREMELKEKFEKNLQE---AADKYQNTNLYLK 473 +F D ++ + K R +++ +L E A ++ + ++L+++ Sbjct: 545 YSRFKDSVLFLEKGPKGLFTDNVAVPTDARPAGVQKPSVADLLERDDAEEQLETSSLFVR 604 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGA------SRGSGFVAFKSADDASRALAE 635 NL+ + + L + F KV ++ S G GFVAF++ D A AL Sbjct: 605 NLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKV 664 Query: 636 MN 641 M+ Sbjct: 665 MD 666 Score = 41.2 bits (95), Expect = 0.003 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = +3 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRA 626 + + L+L+NL TV ++ +RE FA+FG + V DS G S+G + ++ A A Sbjct: 306 KTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASALAA 364 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Frame = +3 Query: 453 NTNLYLKNLDDTVDDEKLRELF-AEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 ++ +++KNL T+ + + R+ F AE +T K++ +R GFV +KSA+DA+RA+ Sbjct: 4 SSRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLI-----PARHIGFVGYKSAEDAARAV 58 Query: 630 AEMN 641 N Sbjct: 59 KYFN 62 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/114 (19%), Positives = 47/114 (41%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFV 284 R++E + + + VKNL T+ +++ +F +G + ++ + + + S+ F F Sbjct: 690 RRREDMAKKAANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFA 749 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADK 446 F + EA A L + + AQ + + EK + +K Sbjct: 750 EFSTAKEALNAFNSLKDTHILGRRLVIDFAQAEDIDPEDQIAAMEKKTRAQVNK 803
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 67.0 bits (162), Expect = 4e-11 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 15/212 (7%) Frame = +3 Query: 51 NSMGMLMNDKKVYVGPFVRKQERDNSPGSVKFN-------NVYVKNLAETTTEDDLKEIF 209 N ++ + KV Q++D S +V +V+V +L+ T +D+K F Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAAF 126 Query: 210 GKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKS 386 FG I+ V++D G+SK +GFV+F + +A A+Q + G+ ++ A +K Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186 Query: 387 EREMELKEKFEKNLQEAA-------DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSC 545 K +E N ++ + N +Y + + ++ +R+ F+ FG I Sbjct: 187 PAP---KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEI 243 Query: 546 KVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 +V D +G FV F S + A+ A+ +N Sbjct: 244 RVFPD-----KGYSFVRFNSHESAAHAIVSVN 270 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 LY+ NL V + + +LF++ G +CK++ D+ G + FV F A+ ALA MN Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMN 67
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 67.0 bits (162), Expect = 4e-11 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 20/196 (10%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGF 281 V KQ D + ++V+++ + T++ L + F F I VV++D + RS+ FGF Sbjct: 15 VSKQNDDG----LDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGF 70 Query: 282 VNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTN 461 V+F D+ A+ KF+ V A K+ +R + E EK+ E+++K N Sbjct: 71 VSFAVEDDTKEALAKARKTKFNGHILRVDIA-KRRDRSKKTSEVVEKSTPESSEKITGQN 129 Query: 462 -------------------LYLKNLD-DTVDDEKLRELFAEFGTITSCKVMRDSNGASRG 581 L ++N+ D KL+++F +GT+ + R +G G Sbjct: 130 NEDEDDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCG 189 Query: 582 SGFVAFKSADDASRAL 629 FV K + AL Sbjct: 190 FAFVTMKKISNCRIAL 205 Score = 53.5 bits (127), Expect = 5e-07 Identities = 37/176 (21%), Positives = 80/176 (45%), Gaps = 40/176 (22%) Frame = +3 Query: 195 LKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRA 374 LK+IFG++GT+ + R DG+ F FV + +A+++ K ++ V A Sbjct: 164 LKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFA 223 Query: 375 QKKS---------------------------------------EREMELKEKFEKNLQEA 437 +K+ +R+++ K +++ ++A Sbjct: 224 VQKNRWEDYKKAQPEMNDKDDNESGNEDAEENHDDEEDENEEEDRQVDQASKNKESKRKA 283 Query: 438 ADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTIT-SCKVMRDSNGASRGSGFVAFK 602 +K ++ +++++N+ +E L F++FG++ + V+ S G ++G+ FVAFK Sbjct: 284 QNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFK 339 Score = 49.7 bits (117), Expect = 7e-06 Identities = 23/58 (39%), Positives = 36/58 (62%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 L+++++ V DE+L + F+ F I V++D+N SRG GFV+F DD ALA+ Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAK 85 Score = 30.8 bits (68), Expect = 3.5 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 19/141 (13%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTIT-SVVVMRDGDGRSKCFGFVNFESP--------- 299 +V+V+N+ TE+ L F KFG++ ++ V+ G +K FV F+ Sbjct: 291 SVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECIKN 350 Query: 300 DEAALAVQDLNGKKFSDKEWYVGR--------AQKKSEREMELK-EKFEKNLQEAADKYQ 452 AA + L G + Y GR ++ + R E K ++ L +A + Sbjct: 351 APAAGSTSLLIGDDVMPEYVYEGRVLSITPTLVREDAGRMAEKNAAKRKEALGKAPGEKD 410 Query: 453 NTNLYLKNLDDTVDDEKLREL 515 NLYL N V+ K+ +L Sbjct: 411 RRNLYLLNEGRVVEGSKMADL 431
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 67.0 bits (162), Expect = 4e-11 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 3/166 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 +YV L E +E L E+ + G + SV + +D + FGFV F ++A A++ L Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 N K K V +A EKN+ A N+++ NLD VD++ L Sbjct: 75 NMIKLYGKPIKVNKASAH-----------EKNMDVGA------NIFVGNLDPEVDEKLLY 117 Query: 510 ELFAEFGTITSC-KVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 + F+ FG I K+MRD +G S+G F+ F S + + AL MN Sbjct: 118 DTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMN 163 Score = 44.3 bits (103), Expect = 3e-04 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVV-VMRDGD-GRSKCFGFVNFESPDEAALAVQ 323 N++V NL E L + F FG I V +MRD D G SK F F+NF S + + A++ Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160 Query: 324 DLNGKKFSDKEWYVGRAQKKSER 392 +NG+ ++ V A K+ + Sbjct: 161 AMNGQFLCNRAITVSYAFKRDSK 183
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 66.6 bits (161), Expect = 6e-11 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGT--ITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQ- 323 ++V NL + L ++F + G I V+ R+ D RS+ FGFV + +EA AV+ Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETD-RSRGFGFVTMSTVEEADKAVEL 157 Query: 324 ----DLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTV 491 DLNG+ + V +A + R F+ + +Y+ N+ + Sbjct: 158 YSQYDLNGRLLT-----VNKAAPRGSRPERAPRTFQPTYR----------IYVGNIPWDI 202 Query: 492 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 DD +L ++F+E G + S +V+ D +G SRG GFV S + S A+A ++ Sbjct: 203 DDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLD 253 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 +YV N+ + L+++F + G + S V+ D + GRS+ FGFV S E + A+ +L Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252 Query: 330 NGKKFSDKEWYVGRAQKKSER 392 +G+ + V A+++ R Sbjct: 253 DGQTLDGRTIRVNAAEERPRR 273
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 66.6 bits (161), Expect = 6e-11 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 3/166 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 VYV L E +E L E+F + G + + + +D G+ + +GFV F S ++A A++ + Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 N K K V +A + KNL A N+++ NLD +D++ L Sbjct: 75 NMIKLYGKPIRVNKASAHN-----------KNLDVGA------NIFIGNLDPEIDEKLLY 117 Query: 510 ELFAEFGTITSC-KVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 + F+ FG I K+MRD G S+G F+ F S D + A+ MN Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 163 Score = 47.0 bits (110), Expect = 5e-05 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Frame = +3 Query: 66 LMNDKKVYVGPF-VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVV- 239 +MN K+Y P V K N V N +++ NL E L + F FG I Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131 Query: 240 VMRDGD-GRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSER 392 +MRD D G SK + F+NF S D + A++ +NG+ ++ V A KK + Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = +3 Query: 438 ADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADD 614 +++ Q+ +Y+ LD+ V + L ELF + G + + + +D G +G GFV F S +D Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66 Query: 615 ASRALAEMN 641 A A+ MN Sbjct: 67 ADYAIKIMN 75
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 66.2 bits (160), Expect = 8e-11 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 2/177 (1%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSV-VVMRDGDGRSKCFGF 281 +K E P ++ +V L+ + ++ LK+ F G + V+ G RS+ +G+ Sbjct: 159 QKNEETEEPATI-----FVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGY 213 Query: 282 VNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTN 461 V+FE+ A A+Q++ GK+ + + K + +KF E +D Sbjct: 214 VDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSD-----T 268 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKV-MRDSNGASRGSGFVAFKSADDASRAL 629 L+L NL D + + ELFA+ G + S ++ +G G+V F + +DA +AL Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Frame = +3 Query: 345 SDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAE 524 S+KE + +K + E E E+ Q+ + + +++ L ++DDE L++ F Sbjct: 131 SEKEESNDKKRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEH 190 Query: 525 FGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 G + +V+ + SRG G+V F++ A +A+ EM Sbjct: 191 IGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 65.9 bits (159), Expect = 1e-10 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 11/174 (6%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 ++V NL L ++F G + V V+ D GRS+ FGFV S E A Q Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY---------QNTNLYLKNLD 482 NG + + V +RE + + Y +Y+ NL Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212 Query: 483 DTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 VDD L LF+E G + +V+ D +G S+G GFV + S+ + A+ ++ Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266 Score = 49.3 bits (116), Expect = 1e-05 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEA 308 G+ N VYV NL+ + L+ +F + G + V+ D D GRSK FGFV ++S E Sbjct: 199 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258 Query: 309 ALAVQDLNGKKFSDKEWYVGRAQKKSER 392 A++ L+G ++ V A+ + R Sbjct: 259 QNAIKSLDGADLDGRQIRVSEAEARPPR 286
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 65.9 bits (159), Expect = 1e-10 Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 7/170 (4%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSV-VVMRDGDGRSKCFGFVNFESPDEAALAVQDL 329 ++V L + + L+E+F + G + VV G + FG+V F ++ A++++ Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 330 N---GKKFS---DKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTV 491 G K + K+ + ++K + E K E ++A + L ++NL Sbjct: 65 TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKC 124 Query: 492 DDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ++ L+ +FA+FG + + R +G RG GFV FK+ +A +AL MN Sbjct: 125 SEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMN 174 Score = 57.4 bits (137), Expect = 4e-08 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 15/130 (11%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGK 338 ++NL+ +EDDLK +F +FG + V + R DG+ + FGFV F++ EA A++ +N K Sbjct: 117 IRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMK 176 Query: 339 KFSDK----EWYVGRAQKK-----------SEREMELKEKFEKNLQEAADKYQNTNLYLK 473 + + +W V + + K E + +E +K +E D + N Sbjct: 177 EIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEEN---- 232 Query: 474 NLDDTVDDEK 503 + DD DDE+ Sbjct: 233 DDDDDDDDEE 242 Score = 33.5 bits (75), Expect = 0.55 Identities = 18/86 (20%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = +3 Query: 375 QKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCK-V 551 +++ ++ +++ K ++ L +D + ++++NL ++E+L EL +FG + + V Sbjct: 309 EEQEDKAVQVSNKKKRKLP--SDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIV 366 Query: 552 MRDSNGASRGSGFVAFKSADDASRAL 629 + S+G F F + + A + L Sbjct: 367 LHPDTEHSKGCAFAQFMTQEAAQKCL 392
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 65.5 bits (158), Expect = 1e-10 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 6/171 (3%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDE--AA 311 +F +++ L+ TTE+ L+ + ++GT+T VVMRD RS+ FGFV F +E AA Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAA 66 Query: 312 LAVQ--DLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDD 485 +A + ++G+ K K + +K+ L++ + + Sbjct: 67 MATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKK-----------------LFVGGIKE 109 Query: 486 TVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 ++ LRE F E+G I S +++ D +G RG FV F D + + + Sbjct: 110 DTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQ 160 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = +3 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDA 617 +K Q L++ L +E LR + ++GT+T C VMRD ++ SRG GFV F ++ Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63 Query: 618 SRALA 632 A+A Sbjct: 64 DAAMA 68
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 65.5 bits (158), Expect = 1e-10 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 6/171 (3%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALA 317 +F +++ L+ TTE+ L+ + ++G +T VVMRD RS+ FGFV F +E A Sbjct: 7 QFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAA 66 Query: 318 V----QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDD 485 + ++G+ K K + +K+ L++ + + Sbjct: 67 MSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKK-----------------LFVGGIKE 109 Query: 486 TVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 ++ LRE F E+G I S +++ D +G RG GFV F D + + + Sbjct: 110 DTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +3 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDA 617 +K Q L++ L +E LR + ++G +T C VMRD ++ SRG GFV F ++ Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63 Query: 618 SRALA 632 A++ Sbjct: 64 DAAMS 68
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 8/169 (4%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVM------RDGDGRSKCFGFVNFESPDEA 308 + ++VKNL +TT + E+F S + R G S FGFV+F + +A Sbjct: 597 STLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQA 656 Query: 309 ALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY--QNTNLYLKNLD 482 A+ ++G K E V + S + M+ E E+ ++ A K + T + +KNL Sbjct: 657 QAALAAMDGYKLDQHELVV----RASNKAMDAAE--ERRREDTAKKIAARRTKIIIKNLP 710 Query: 483 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 + +R LF +G + S +V + + ++RG GF F SA +A A+ Sbjct: 711 FQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAM 759 Score = 60.5 bits (145), Expect = 4e-09 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 30/220 (13%) Frame = +3 Query: 72 NDKKVYVGPFVRKQERDNSPGSVKFNN-VYVKNLAETTTEDDLKEIFGKFGTITSVVVMR 248 +D K V V ++E D + ++ ++ ++V+NL +E DL+ +F KFG I + V Sbjct: 275 DDDKAAVESSVEEEEVDTNIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAF 334 Query: 249 D-GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKK----------SERE 395 D SK F +V + PD A A ++L+GK F + ++ A K S+ Sbjct: 335 DTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHILPATAKKTYKIDEHELSKLP 394 Query: 396 MELKEKFEKNLQEAADKYQNTNLYLKN------------------LDDTVDDEKLRELFA 521 ++ +++ ++ L+ ++ + +LY+ LD T D +++ A Sbjct: 395 LKKQKQIKRKLEASSSTFSWNSLYMNTDAVMSSVAERLGVSKADLLDPTSADAAVKQAHA 454 Query: 522 EFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 E I K +NG + AFK + + A+ N Sbjct: 455 ETHVIQETKAYFTANGVN----LDAFKQRERGNTAILVKN 490 Score = 53.1 bits (126), Expect = 7e-07 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 21/200 (10%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFV 284 +++ER N+ + VKN + DDL+++F +G IT +++ G V Sbjct: 477 KQRERGNTA-------ILVKNFSYGVKVDDLRKLFEPYGQITRLLMPPSG-----TIAIV 524 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKK------SEREMELKEKFEKNLQEAADK 446 F PDEA A + L +K D ++ +A + + L+ K AD Sbjct: 525 EFARPDEAQKAFKGLAYRKVGDSILFLEKAPANLFDATTAPQTSVLETKAVSQGFSTADT 584 Query: 447 YQ---------NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKV------MRDSNGASRG 581 + + L++KNL+ + +E+ E+F S ++ R S G Sbjct: 585 FAAEDGDEPVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMG 644 Query: 582 SGFVAFKSADDASRALAEMN 641 GFV F++ A ALA M+ Sbjct: 645 FGFVDFRTKAQAQAALAAMD 664 Score = 47.0 bits (110), Expect = 5e-05 Identities = 29/114 (25%), Positives = 55/114 (48%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFV 284 R++E + + + +KNL T+ D++ +FG +G + SV V + D ++ FGF Sbjct: 688 RRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFA 747 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADK 446 +F S EA A+ L + + A +++ + E+ EK + E D+ Sbjct: 748 DFVSAREAENAMDALKNTHLLGRRLVLEFANEEAVDPEQEIEQIEKKVGEQLDR 801 Score = 33.1 bits (74), Expect = 0.71 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = +3 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 +NT +++ L T +++LR F+ IT V+ R GFV FKS++ A +A Sbjct: 2 ENTRVFVSGLPPTFTNDQLRMHFSSRFQITDAHVL-----PKRRIGFVGFKSSEAAQQAA 56 Query: 630 AEMN 641 + N Sbjct: 57 SYFN 60
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 65.5 bits (158), Expect = 1e-10 Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 2/165 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRS-KCFGFVNFESPDEAALAVQDL 329 +Y+ NL E T+ L E+ + G + ++ + RD S FGF F + A Q L Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 N K K V RA + + NL++ NLD VD+ L Sbjct: 73 NQVKLFGKPIRVNRASQ----------------DRGVNTLIGANLFVGNLDPLVDERVLY 116 Query: 510 ELFAEFGTITSC-KVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + F+ G + +V RD NG S+G GFV++ S + A A+ MN Sbjct: 117 DTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMN 161 Score = 49.7 bits (117), Expect = 7e-06 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Frame = +3 Query: 66 LMNDKKVYVGPF-VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVV- 239 ++N K++ P V + +D ++ N++V NL E L + F G + Sbjct: 71 ILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQ 130 Query: 240 VMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFE 419 V RD +GRSK +GFV+++S + A A++ +N + +K V A K+ + + E Sbjct: 131 VARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAE 190 Query: 420 KNLQEAADK 446 + L AA K Sbjct: 191 RKLAAAAKK 199 Score = 37.7 bits (86), Expect = 0.029 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Frame = +3 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDA 617 D+ Q+ +YL NLD+ V D L EL + G + + + RD + G GF F D Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65 Query: 618 SRALAEMN 641 A +N Sbjct: 66 EYACQILN 73
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 65.1 bits (157), Expect = 2e-10 Identities = 45/171 (26%), Positives = 77/171 (45%) Frame = +3 Query: 129 PGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEA 308 PG+ F +++ NL E T +L+ +F K+GT+ V+++ +GFV+ E+ + Sbjct: 2 PGAGTFK-LFIGNLDEKTQATELRALFEKYGTVVECDVVKN-------YGFVHMETEQQG 53 Query: 309 ALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDT 488 A+Q+LNG + E K E A T +++ NL D Sbjct: 54 RDAIQNLNGYTLN-----------------EFAIKVEAAKSRRAPNTPTTKIFVGNLTDK 96 Query: 489 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ++RELF ++GT+ C ++R+ GFV D A+ E+N Sbjct: 97 TRAPEVRELFQKYGTVVECDIVRN-------YGFVHLDCVGDVQDAIKELN 140 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/96 (23%), Positives = 50/96 (52%) Frame = +3 Query: 51 NSMGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTIT 230 N G +N+ + V + + N+P + ++V NL + T +++E+F K+GT+ Sbjct: 59 NLNGYTLNEFAIKVEA-AKSRRAPNTPTT----KIFVGNLTDKTRAPEVRELFQKYGTVV 113 Query: 231 SVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGK 338 ++R+ +GFV+ + + A+++LNG+ Sbjct: 114 ECDIVRN-------YGFVHLDCVGDVQDAIKELNGR 142
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 64.3 bits (155), Expect = 3e-10 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 6/193 (3%) Frame = +3 Query: 75 DKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD- 251 +K + P RK+ +F +++ L+ TTE+ L+ + ++G +T VVMRD Sbjct: 2 EKTLETVPLERKKREKE-----QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP 56 Query: 252 GDGRSKCFGFVNFESPDE--AALAVQ--DLNGKKFSDKEWYVGRAQKKSEREMELKEKFE 419 RS+ FGFV F S E AA+A + ++G+ K K + +K+ Sbjct: 57 ASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK--- 113 Query: 420 KNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVA 596 L++ + + ++ LR+ F E+G I + +++ D +G RG GFV Sbjct: 114 --------------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159 Query: 597 FKSADDASRALAE 635 F D + + + Sbjct: 160 FDDHDPVDKIVLQ 172
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 64.3 bits (155), Expect = 3e-10 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 6/183 (3%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGF 281 R +E + + +++ L+ TT+D L+E F K+GT+T VVMRD RS+ FGF Sbjct: 21 RGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGF 80 Query: 282 VNFESPDEAALAV----QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 V + +E A+ ++G+ K K + +K+ F ++E ++Y Sbjct: 81 VTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY 140 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRA 626 LR+ F ++G I + +VM D +G RG FV F D + Sbjct: 141 -----------------NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 627 LAE 635 + + Sbjct: 184 VVQ 186
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 64.3 bits (155), Expect = 3e-10 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 6/183 (3%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGF 281 R +E + + +++ L+ TT+D L+E F K+GT+T VVMRD RS+ FGF Sbjct: 21 RGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGF 80 Query: 282 VNFESPDEAALAV----QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 V + +E A+ ++G+ K K + +K+ F ++E ++Y Sbjct: 81 VTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY 140 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRA 626 LR+ F ++G I + +VM D +G RG FV F D + Sbjct: 141 -----------------NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 627 LAE 635 + + Sbjct: 184 VVQ 186
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 64.3 bits (155), Expect = 3e-10 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 6/183 (3%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGF 281 R +E + + +++ L+ TT+D L+E F K+GT+T VVMRD RS+ FGF Sbjct: 21 RGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGF 80 Query: 282 VNFESPDEAALAV----QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 V + +E A+ ++G+ K K + +K+ F ++E ++Y Sbjct: 81 VTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY 140 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRA 626 LR+ F ++G I + +VM D +G RG FV F D + Sbjct: 141 -----------------NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 627 LAE 635 + + Sbjct: 184 VVQ 186
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 64.3 bits (155), Expect = 3e-10 Identities = 51/177 (28%), Positives = 86/177 (48%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 +QE G + + V NL+ +E+ L+E+F K TS+ + ++ GR K + FV Sbjct: 448 QQESQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVE 504 Query: 288 FESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLY 467 F + ++A A+ N + GRA + E +K N + ++ Q+ L+ Sbjct: 505 FPTAEDAKEALNSCNNTEIE------GRAIRL-EFSSPSWQKGNMNARGGFNQ-QSKTLF 556 Query: 468 LKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 ++ L + +E LRE F G+I++ V G+S+G GFV F S +DA A M Sbjct: 557 VRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611 Score = 63.5 bits (153), Expect = 5e-10 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 4/180 (2%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDL----KEIFGKFGTITSVVVMRDGDGRSKCF 275 K+++ +P S +++VKNL T ++L KE FGK S V + G SK F Sbjct: 270 KKKKTETPASAF--SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI----GSSKRF 323 Query: 276 GFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 G+V+F S ++ A+Q LNGKK E + +A+ K + KE+ + Sbjct: 324 GYVDFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDAR----------- 371 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 L++KNL V +++++ +F +++ + G+S+G ++ FK+ +A +AL E Sbjct: 372 -TLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEE 427 Score = 47.0 bits (110), Expect = 5e-05 Identities = 27/79 (34%), Positives = 46/79 (58%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++V+ L+E TTE+ L+E F G+I++ +V G SK FGFV+F SP++A A + + Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAME 612 Query: 333 GKKFSDKEWYVGRAQKKSE 389 + + + A+ K E Sbjct: 613 DGEIDGNKVTLDFAKPKGE 631 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/95 (32%), Positives = 47/95 (49%) Frame = +3 Query: 345 SDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAE 524 S+ E V A K ++EM K E ++ +L++KNL T D E+LR E Sbjct: 244 SEDEKPVKEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKE 303 Query: 525 FGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 F + +V G+S+ G+V F SA+D +AL Sbjct: 304 FFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL 338
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 63.9 bits (154), Expect = 4e-10 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 19/182 (10%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 ++V NL + L +F + G + V V+ D GRS+ FGFV + +E A Q Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 330 NGKKFSDKEWYVGRAQKKSERE-----------------MELKEKFEKNLQEAADKYQNT 458 NG + + V ++RE + F + + Sbjct: 150 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFG-GARGGRSVDSSN 208 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 +Y+ NL VDD L+ELF+E G + KV+ D +G SRG GFV + SA + + A+ Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268 Query: 636 MN 641 +N Sbjct: 269 LN 270 Score = 51.2 bits (121), Expect = 3e-06 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQ 323 N VYV NL+ + LKE+F + G + V+ D D GRS+ FGFV + S E A+ Sbjct: 208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAID 267 Query: 324 DLNGKKFSDKEWYVGRAQKKSERE 395 LNG + V A+++ R+ Sbjct: 268 SLNGIDLDGRSIRVSAAEERPRRQ 291 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRA 626 ++ L++ NL +VD L LF G + +V+ D +G SRG GFV + ++ A Sbjct: 86 EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAA 145 Query: 627 LAEMN 641 + N Sbjct: 146 EQQFN 150
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 63.9 bits (154), Expect = 4e-10 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 6/171 (3%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDE--AA 311 +F +++ L+ TTE+ L+ + ++G +T VVMRD RS+ FGFV F S E AA Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 66 Query: 312 LAVQ--DLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDD 485 +A + ++G+ K K + +K+ L++ + + Sbjct: 67 MAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK-----------------LFVGGIKE 109 Query: 486 TVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 ++ LR+ F E+G I + +++ D +G RG GFV F D + + + Sbjct: 110 DTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +3 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDA 617 +K Q L++ L +E LR + ++G +T C VMRD ++ SRG GFV F S + Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63 Query: 618 SRALA 632 A+A Sbjct: 64 DAAMA 68
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 63.9 bits (154), Expect = 4e-10 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 6/175 (3%) Frame = +3 Query: 123 NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESP 299 NS G+ + ++V L +TT++ L+ F ++G + V+M+D +S+ FGFV F+ P Sbjct: 2 NSAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61 Query: 300 D----EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLY 467 + A L+G+ K Q + R KE ++K +D ++ ++ Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRP---KEGWQKG--PRSDSSKSNKIF 116 Query: 468 LKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRAL 629 + + + +LRE F +FG +T ++ D+ RG GF+ F+ +A+ Sbjct: 117 VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALA 632 L++ LD + E LR F+++G + C +M+D + SRG GFV FK + LA Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 63.2 bits (152), Expect = 6e-10 Identities = 46/160 (28%), Positives = 78/160 (48%) Frame = +3 Query: 162 KNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKK 341 KNL+ TED+LKE+F I V DGRSK ++ F+S +A +++ G + Sbjct: 401 KNLSFNITEDELKEVFEDAVEIRLV----SQDGRSKGIAYIEFKSEADAEKNLEEKQGAE 456 Query: 342 FSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFA 521 + + +K +R+ E+ + + ++ L L NL + +E L+E+F Sbjct: 457 IDGRSVSLYYTGEKGQRQ-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 509 Query: 522 EFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + T KV ++ +G S+G F+ F S +DA AL N Sbjct: 510 K---ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 546 Score = 62.0 bits (149), Expect = 1e-09 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 2/186 (1%) Frame = +3 Query: 87 YVGPFVRKQERD--NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG 260 Y G ++QER NS S + + + NL+ + TE+ L+E+F K T + V ++ G Sbjct: 466 YTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHG 522 Query: 261 RSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAA 440 +SK + F+ F S ++A A+ N + R + L+ + + A Sbjct: 523 KSKGYAFIEFASFEDAKEALNSCNKMEIEG-------------RTIRLELQGPRGSPNAR 569 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDAS 620 + T L++K L + +E L+E F G++ + V G+S+G GFV F S +DA Sbjct: 570 SQPSKT-LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAK 626 Query: 621 RALAEM 638 A M Sbjct: 627 AAKEAM 632 Score = 48.1 bits (113), Expect = 2e-05 Identities = 40/180 (22%), Positives = 80/180 (44%) Frame = +3 Query: 96 PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCF 275 P +KQ+ + S + FN +++ NL + +LK + + + G ++ F Sbjct: 294 PEAKKQKIEGSEPTTPFN-LFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTNRKF 352 Query: 276 GFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 G+V+FES ++ A+ +L G K E + + + + +++ Sbjct: 353 GYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRAAR--------------- 396 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 L KNL + +++L+E+F + I + +G S+G ++ FKS DA + L E Sbjct: 397 -TLLAKNLSFNITEDELKEVFEDAVEIR----LVSQDGRSKGIAYIEFKSEADAEKNLEE 451 Score = 34.3 bits (77), Expect = 0.32 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Frame = +3 Query: 291 ESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREM-ELKEKFEKNLQEAADKYQNT--N 461 E DE +D + ++E V A K ++EM + KE E Q+ T N Sbjct: 252 EEEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFN 311 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 L++ NL+ +L+ +E + G +R G+V F+SA+D +AL Sbjct: 312 LFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKAL 367
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 62.8 bits (151), Expect = 8e-10 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 2/182 (1%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFG 278 VR+ + +P V+ LA DL+E F G + V ++ D + R SK Sbjct: 138 VREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIA 197 Query: 279 FVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT 458 +V F LA+ L G++ V +Q + R + +K Sbjct: 198 YVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM------ 250 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAE 635 LY+ +L + ++ LR +F FG I S ++M DS G S+G GF+ F ++ A +AL + Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 636 MN 641 +N Sbjct: 311 LN 312 Score = 53.9 bits (128), Expect = 4e-07 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEA 308 GS +YV +L TED L+ IF FG I S+ +M D + GRSK +GF+ F + A Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304 Query: 309 ALAVQDLNGKKFSDKEWYVGRAQKKSE 389 A++ LNG + + + VG ++++ Sbjct: 305 KKALEQLNGFELAGRPMKVGHVTERTD 331
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 62.8 bits (151), Expect = 8e-10 Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 6/175 (3%) Frame = +3 Query: 123 NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESP 299 N+ G+ + ++V L +TT++ L+ F ++G + V+M+D +S+ FGFV F+ P Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61 Query: 300 D----EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLY 467 + A L+G+ K Q + R KE ++K +D ++ ++ Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRP---KEGWQKG--PRSDNSKSNKIF 116 Query: 468 LKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRAL 629 + + + +LRE F +FG +T ++ D+ RG GF+ F+ +A+ Sbjct: 117 VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALA 632 L++ LD + E LR F+++G + C +M+D + SRG GFV FK + LA Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 62.8 bits (151), Expect = 8e-10 Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 19/182 (10%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 ++V NL + L +F + G + V V+ D GRS+ FGFV + +E A Q Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 330 NGKKFSDKEWYVGRAQKKSERE-----------------MELKEKFEKNLQEAADKYQNT 458 NG + + V ++RE + F + + Sbjct: 149 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFG-GARGGRSVDSSN 207 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 +Y+ NL VDD L+ELF+E G + KV+ D +G SRG GFV + S+ + + A+ Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267 Query: 636 MN 641 +N Sbjct: 268 LN 269 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQ 323 N VYV NL+ + LKE+F + G + V+ D D GRS+ FGFV + S E A+ Sbjct: 207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAID 266 Query: 324 DLNGKKFSDKEWYVGRAQKKSERE 395 LNG + V A+++ R+ Sbjct: 267 SLNGVDLDGRSIRVSAAEERPRRQ 290 Score = 35.8 bits (81), Expect = 0.11 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 1/101 (0%) Frame = +3 Query: 342 FSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFA 521 FS + G Q + + E+ + +F ++L+ L++ NL +VD L LF Sbjct: 59 FSTRVALSGFDQLEDDVEVAEQPRFSEDLK----------LFVGNLPFSVDSAALAGLFE 108 Query: 522 EFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 G + +V+ D G SRG GFV + ++ A + N Sbjct: 109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFN 149
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 62.4 bits (150), Expect = 1e-09 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 2/186 (1%) Frame = +3 Query: 87 YVGPFVRKQERD--NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG 260 Y G ++QER NS S + + + NL+ + TE+ L+E+F K T + V ++ G Sbjct: 463 YTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQG 519 Query: 261 RSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAA 440 +SK + F+ F S ++A A+ N + R + L+ + + A Sbjct: 520 KSKGYAFIEFASFEDAKEALNSCNKMEIEG-------------RTIRLELQGPRGSPNAR 566 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDAS 620 + T L++K L + +E L+E F G++ + V G+S+G GFV F S +DA Sbjct: 567 SQPSKT-LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAK 623 Query: 621 RALAEM 638 A M Sbjct: 624 AAKEAM 629 Score = 61.6 bits (148), Expect = 2e-09 Identities = 45/160 (28%), Positives = 77/160 (48%) Frame = +3 Query: 162 KNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKK 341 KNL+ TED+LKE+F I V DG+SK ++ F+S +A +++ G + Sbjct: 398 KNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 453 Query: 342 FSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFA 521 + + +K +R+ E+ + + ++ L L NL + +E L+E+F Sbjct: 454 IDGRSVSLYYTGEKGQRQ-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 506 Query: 522 EFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + T KV ++ G S+G F+ F S +DA AL N Sbjct: 507 K---ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCN 543 Score = 48.5 bits (114), Expect = 2e-05 Identities = 41/180 (22%), Positives = 81/180 (45%) Frame = +3 Query: 96 PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCF 275 P +KQ+ + S + FN +++ NL + +LK + + V+ G ++ F Sbjct: 291 PEAKKQKVEGSESTTPFN-LFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTNRKF 349 Query: 276 GFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 G+V+FES ++ A+ +L G K E + + + + +++ Sbjct: 350 GYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRAAR--------------- 393 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 L KNL + +++L+E+F + I + +G S+G ++ FKS DA + L E Sbjct: 394 -TLLAKNLSFNITEDELKEVFEDALEIR----LVSQDGKSKGIAYIEFKSEADAEKNLEE 448 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/88 (26%), Positives = 44/88 (50%) Frame = +3 Query: 366 GRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSC 545 G+ +K+ ++ E+ E +K E ++ NL++ NL+ +L+ +E Sbjct: 278 GKRKKEMTKQKEVPEA-KKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDL 336 Query: 546 KVMRDSNGASRGSGFVAFKSADDASRAL 629 V+ G +R G+V F+SA+D +AL Sbjct: 337 AVVDVRTGTNRKFGYVDFESAEDLEKAL 364
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 62.4 bits (150), Expect = 1e-09 Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 1/181 (0%) Frame = +3 Query: 96 PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCF 275 P +K + D + + ++++ NL T D+LK+ +F + ++ + G SK F Sbjct: 218 PEAKKTKTDTASEGL---SIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKF 274 Query: 276 GFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKN-LQEAADKYQ 452 G+V+F S +E A++ L GKK E + +A F+KN E + Sbjct: 275 GYVDFSSEEEVEKALK-LTGKKILGTEVKIEKAM-----------AFDKNKTAENKKERD 322 Query: 453 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALA 632 + L++KN+ + E+L+E+F I ++ +G+++G +V F + D+A++AL Sbjct: 323 SRTLFVKNIPYSTTVEELQEIFENAKDI---RIPTGKDGSNKGIAYVEFSNEDEANKALE 379 Query: 633 E 635 E Sbjct: 380 E 380 Score = 61.2 bits (147), Expect = 2e-09 Identities = 47/160 (29%), Positives = 78/160 (48%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGK 338 V NL+ + TED L+E+F K TS+ + ++ GR+K F F+ F S ++A A+ N Sbjct: 418 VNNLSYSATEDSLREVFEK---ATSIRIPQN-QGRAKGFAFIEFSSAEDAKDAMDSCNNT 473 Query: 339 KFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELF 518 + GR+ + +E + Q+ L+++ L + +E L+E F Sbjct: 474 EIE------GRSIR-----LEFSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAF 522 Query: 519 AEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 G++ + V GAS+G GFV F +A+DA A M Sbjct: 523 D--GSVNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560 Score = 46.6 bits (109), Expect = 6e-05 Identities = 26/88 (29%), Positives = 48/88 (54%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAA 311 GS + ++V+ L+E TTE+ LKE F G++ + +V G SK FGFV+F + ++A Sbjct: 497 GSAQSKTLFVRGLSEDTTEETLKEAFD--GSVNARIVTDRDTGASKGFGFVDFSTAEDAK 554 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSERE 395 A + + + + + A+ K + + Sbjct: 555 AAKEAMEDGEIDGNKVTLDFAKPKGDSQ 582
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 62.0 bits (149), Expect = 1e-09 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 2/182 (1%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFG 278 VR+ + SP V+ LA DL++ F G + V ++ D + R SK Sbjct: 151 VREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIA 210 Query: 279 FVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT 458 +V F LA+ L G++ V +Q + R + +K Sbjct: 211 YVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKG------NGGPM 263 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAE 635 LY+ +L + ++ LR +F FG I + +M+DS+ G S+G GF+ F ++ A RAL + Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323 Query: 636 MN 641 +N Sbjct: 324 LN 325 Score = 55.8 bits (133), Expect = 1e-07 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 +YV +L TED L+ IF FG I ++V+M+D D GRSK +GF+ F + A A++ L Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 330 NGKKFSDKEWYVGRAQKK 383 NG + + + VG ++ Sbjct: 325 NGFELAGRPMRVGHVTER 342
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 61.6 bits (148), Expect = 2e-09 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 28/219 (12%) Frame = +3 Query: 57 MGMLMNDKKVYVGPFVRKQERDNS----------------PGSVKFNNVYVKNLAETTTE 188 +GM ++ VGP +Q+R+ P + +++K L TTT Sbjct: 489 VGMFKSETAPGVGPISTEQKREEEAKALAEKVESLPEQPDPTDEAGSTLFLKGLNFTTTT 548 Query: 189 DDLKEIFGKFGTITSVVVM------RDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSD 350 L+ + + V R G+ S +GFV F++ + A A++ L G + Sbjct: 549 PHLQTVLSHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEIDG 608 Query: 351 KEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFG 530 K V AQ+ +E + E K K K ++T + +KNL + +RELF+ +G Sbjct: 609 KSLEVKFAQRGAEDDRETK----KGGDAEGGKTKSTKVLVKNLPFEATKKDVRELFSAYG 664 Query: 531 TITSCKVMR----DSNGA--SRGSGFVAFKSADDASRAL 629 + S ++ R S GA +RG F+ F + +A+RA+ Sbjct: 665 QLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAARAM 703 Score = 41.2 bits (95), Expect = 0.003 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 10/139 (7%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMR------DGDGRSK 269 K+ D G K V VKNL T+ D++E+F +G + S+ + R G ++ Sbjct: 627 KKGGDAEGGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTR 686 Query: 270 CFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREME-LKEKFE---KNLQEA 437 F F+ F + EAA A++ L + + A + E +++ L+EK + + +++ Sbjct: 687 GFAFLEFTTHTEAARAMEALKHTHLLGRHLVLQWANEGEEVDIKGLREKVKGEVRGMEDG 746 Query: 438 ADKYQNTNLYLKNLDDTVD 494 D+ + + +D +D Sbjct: 747 GDRKRRKLDFKGGKEDEMD 765
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 61.6 bits (148), Expect = 2e-09 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 2/182 (1%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFG 278 VR+ + +P V+ LA DL+E F G + V ++ D + R S+ Sbjct: 138 VREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIA 197 Query: 279 FVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT 458 +V F LA+ L G++ V +Q + R + +K Sbjct: 198 YVEFVDVSSVRLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM------ 250 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAE 635 LY+ +L + ++ LR +F FG I S ++M DS G S+G GF+ F ++ A +AL + Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 636 MN 641 +N Sbjct: 311 LN 312 Score = 53.9 bits (128), Expect = 4e-07 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEA 308 GS +YV +L TED L+ IF FG I S+ +M D + GRSK +GF+ F + A Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304 Query: 309 ALAVQDLNGKKFSDKEWYVGRAQKKSE 389 A++ LNG + + + VG ++++ Sbjct: 305 KKALEQLNGFELAGRPMKVGHVTERTD 331
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 60.8 bits (146), Expect = 3e-09 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 6/165 (3%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR------SKCFGFVNFESPDEAAL 314 +++KNL +TT L E F S + D + S FGF +F++ +A Sbjct: 594 LFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQA 653 Query: 315 AVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVD 494 A+ +NG D+ V RA K E + K + + AA + T + +KNL Sbjct: 654 ALAVMNGYTL-DRHTLVVRASHKGMDAAEERRKEDTAKKIAA---RRTKIIIKNLPFQAT 709 Query: 495 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 + +R LF +G + S +V + + ++RG GF F SA +A A+ Sbjct: 710 KKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAM 754 Score = 54.3 bits (129), Expect = 3e-07 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 29/192 (15%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 ++V+NL+ T E +L+ +F FG I + V D SK F +V + PD A A ++L Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356 Query: 330 NGKKFSDKEWYVGRAQKKSEREME---------LKEKFEKNLQEAADK-------YQNTN 461 +GK F + ++ A +K +++ K+K K QEAA Y N + Sbjct: 357 DGKIFQGRLLHILPASQKKTYKLDEHELSKLPLKKQKQIKRKQEAASSTFSWNSLYMNAD 416 Query: 462 LYLKN------------LDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKS 605 + + LD T D +++ AE I K +NG + AFK Sbjct: 417 AVMSSVAERIGVSKADLLDPTSSDAAVKQAHAETHVIQETKAYFKANGVN----LDAFKQ 472 Query: 606 ADDASRALAEMN 641 + + A+ N Sbjct: 473 RERGNLAILVKN 484 Score = 52.8 bits (125), Expect = 9e-07 Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 22/185 (11%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 + VKN + T +DL+++F FG IT +++ G V F PDEA A + L Sbjct: 480 ILVKNFSYGTKTEDLRKLFEPFGQITRLLMPPSG-----TIAIVAFARPDEAQKAFKSLA 534 Query: 333 GKKFSDKEWYVGRA-----------QKKSEREMELKEKFEKNLQEAADK-----YQNTNL 464 +K D ++ +A Q + + F AAD+ L Sbjct: 535 YRKLGDSILFLEKAPKDLFEADVPPQNPLPETKAVSQGFSTADTFAADEGDEEVMATATL 594 Query: 465 YLKNLDDTVDDEKLRELFAEFGTITSCKV------MRDSNGASRGSGFVAFKSADDASRA 626 ++KNL+ + ++ L E F S ++ S G GF FK+ A A Sbjct: 595 FIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQAA 654 Query: 627 LAEMN 641 LA MN Sbjct: 655 LAVMN 659 Score = 47.0 bits (110), Expect = 5e-05 Identities = 29/114 (25%), Positives = 55/114 (48%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFV 284 R++E + + + +KNL T+ D++ +FG +G + SV V + D ++ FGF Sbjct: 683 RRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFA 742 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADK 446 +F S EA A+ L + + A +++ E ++ EK + E D+ Sbjct: 743 DFVSAREAENAMDALKNTHLLGRRLVLEFANEEAIDAEEEIQRIEKKVGEQLDR 796 Score = 30.8 bits (68), Expect = 3.5 Identities = 17/64 (26%), Positives = 35/64 (54%) Frame = +3 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 ++T +++ L T+ +++L++ F +T V+ R GFV FKS++ A +A+ Sbjct: 2 ESTRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVL-----PKRRIGFVGFKSSEAAQQAV 56 Query: 630 AEMN 641 + N Sbjct: 57 SYFN 60
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 60.5 bits (145), Expect = 4e-09 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 16/138 (11%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 + + VK L + TE+ L+E F K G +T V +M+ +G S+ F F+ ++S D A AV+ Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61 Query: 327 LN-------------GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQE---AADKYQNT 458 N K FSD + +K+ E +LK++ E+ L++ A K Q T Sbjct: 62 FNKSFIDTARIEVEFAKTFSDPTVPLSFKEKRKREEQKLKDEQERLLEQELRAQAKKQKT 121 Query: 459 NLYLKNLDDTVDDEKLRE 512 + D+ + KLRE Sbjct: 122 KSTSEIDDEIASNPKLRE 139 Score = 54.7 bits (130), Expect = 2e-07 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 6/168 (3%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKF-GTITSVVVMR-----DGDGRSKCFGFVNFESPDEAAL 314 V+VKNL TT L ++F G + + V + G S FGFV F + ++A + Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678 Query: 315 AVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVD 494 A+ L+G K + ++ K+ + +++ + +KNL Sbjct: 679 AISTLDGHVLDGH---------KLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEAT 729 Query: 495 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 + L ELF FG + S +V + + ++RG FV F +A A++++ Sbjct: 730 RKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQL 777 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/62 (41%), Positives = 37/62 (59%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 + L +K L +EKLRE F++ G +T K+M+ NG SR F+ +KSAD A RA+ Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61 Query: 636 MN 641 N Sbjct: 62 FN 63 Score = 49.3 bits (116), Expect = 1e-05 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAAL 314 S K + + +KNL T DL E+FG FG + SV V + D ++ F FV F EA Sbjct: 713 SGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAET 772 Query: 315 AVQDLNGKKFSDKEWYVGRAQKKSER-EMELKEKFEKNLQEAA 440 A+ L G + + A++ E E+E++ +K ++ A Sbjct: 773 AMSQLEGVHLLGRRLVMQYAEQDPENAEVEIERMTKKVKKQVA 815 Score = 45.1 bits (105), Expect = 2e-04 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 32/215 (14%) Frame = +3 Query: 93 GPFVRKQER---DNSPGSVKFNNVYVKNLAETTTED---DLKEIFGKFGTITSVVVMRDG 254 GP V+ E N+ V +N+ V N E ++D D KE+ K G D Sbjct: 164 GPSVQDLENALNGNNESPVDKSNIEVVNTVEDASDDEYNDFKELSNKHGE------NEDE 217 Query: 255 DGRSKCFGF----VNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSERE--------- 395 + + N E+ D+ + SD EW R+ + E Sbjct: 218 EEEEEMMSLGDLPTNEENKDKNESGENLAANENISDLEWLKSRSTRIKENGEVPEIVPEV 277 Query: 396 MELKEKFEKNLQ-----------EAADKYQNTN-LYLKNLDDTVDDEKLRELFAEFGTIT 539 E+ E E Q + A K + T L+++N+ +E R LF+++G + Sbjct: 278 KEVNEVTEVTQQSDNEPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALE 337 Query: 540 SCKVMRDSN-GASRGSGFVAFKSADDASRALAEMN 641 + D+ G S+G +V F +DA+RA ++ Sbjct: 338 EVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLD 372 Score = 37.0 bits (84), Expect = 0.049 Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 32/210 (15%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 K+ERD+ + VKN TT D++ E+F +G + +++ G + Sbjct: 487 KKERDDKI-------ILVKNFPFGTTIDEIGELFSAYGQLKRMLMPPAG-----TIAIIE 534 Query: 288 FESPDEAALAVQDLNGKKFSDKEWYVGRA-------------------QKKSEREMELKE 410 F A A L K+F Y+ + Q+++E +E K Sbjct: 535 FRDAPSARAAFSKLAYKRFKSSILYLEKGPKDLFTREPTTNEVATIPEQQQNEHAVEAKI 594 Query: 411 KFEKNLQEAADKYQ-------NTNLYLKNLDDTVDDEKLRELFAEFG--TITSCKVMRDS 563 + L E+ + + +++KNL+ + L +LF + + K D Sbjct: 595 SANEILGESKEDDEIESVQGPTVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDP 654 Query: 564 NGA----SRGSGFVAFKSADDASRALAEMN 641 + S G GFV F++ + A+ A++ ++ Sbjct: 655 KNSGKTLSMGFGFVEFRTKEQANVAISTLD 684
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 60.5 bits (145), Expect = 4e-09 Identities = 34/94 (36%), Positives = 61/94 (64%), Gaps = 3/94 (3%) Frame = +3 Query: 108 KQERDNSP-GSVKF-NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFG 278 K+E ++P GS N+++V +A ED+L++IF KFGT+T V +MR+ + S+ FG Sbjct: 86 KKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFG 145 Query: 279 FVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQK 380 F++F + +EA A+ +LN ++F + V +A++ Sbjct: 146 FLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKR 179 Score = 50.1 bits (118), Expect = 6e-06 Identities = 23/78 (29%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Frame = +3 Query: 417 EKNLQEAADKYQN--TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSG 587 +K Q A + +N +L++ + + +++L+++F++FGT+T ++MR+ ASRG G Sbjct: 86 KKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFG 145 Query: 588 FVAFKSADDASRALAEMN 641 F++F + ++A+ A+ +N Sbjct: 146 FLSFSTVEEATSAIDNLN 163
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 60.5 bits (145), Expect = 4e-09 Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 2/180 (1%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFV 284 ++ERD V+V LA T +L + F + G + ++RD GRSK +V Sbjct: 234 EEERDR-------RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYV 286 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAAD-KYQNTN 461 F D A+ L+GK+ V + +E E K + L AA + Sbjct: 287 EFCHEDSVQAAIA-LSGKRLLGLPVIV----QLTEAEKNRKAREAAELARAASAEIPFHR 341 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 L + N+ + DE ++ +F FG I + RD S+G G++ +++ A AL +MN Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMN 401 Score = 53.9 bits (128), Expect = 4e-07 Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Frame = +3 Query: 138 VKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALA 317 + F+ + V N+ T++D+K IF FG I V + RD RSK FG++ + +P A A Sbjct: 337 IPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNA 396 Query: 318 VQDLNGKKFSDKEWYV--GRAQKKSEREMELKEKFEKNL 428 ++ +NG + + V G + +E + ++F++ L Sbjct: 397 LEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETL 435
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 60.1 bits (144), Expect = 5e-09 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 3/179 (1%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFV 284 K E P ++ +++ L+ TT++ L+ F ++GT+T VVMRD RS+ FGFV Sbjct: 2 KSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 59 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEK-NLQEAADKYQNTN 461 + + +E A+ R K R +E K + + Q Sbjct: 60 TYATVEEVDAAMN--------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK 105 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 +++ + + ++ LR+ F ++G I ++M D +G RG FV F D + + + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 60.1 bits (144), Expect = 5e-09 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 3/179 (1%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFV 284 K E P ++ +++ L+ TT++ L+ F ++GT+T VVMRD RS+ FGFV Sbjct: 2 KSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 59 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEK-NLQEAADKYQNTN 461 + + +E A+ R K R +E K + + Q Sbjct: 60 TYATVEEVDAAMN--------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK 105 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 +++ + + ++ LR+ F ++G I ++M D +G RG FV F D + + + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 60.1 bits (144), Expect = 5e-09 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 3/179 (1%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFV 284 K E P ++ +++ L+ TT++ L+ F ++GT+T VVMRD RS+ FGFV Sbjct: 2 KSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 59 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEK-NLQEAADKYQNTN 461 + + +E A+ R K R +E K + + Q Sbjct: 60 TYATVEEVDAAMN--------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK 105 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 +++ + + ++ LR+ F ++G I ++M D +G RG FV F D + + + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 60.1 bits (144), Expect = 5e-09 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 3/179 (1%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFV 284 K E P ++ +++ L+ TT++ L+ F ++GT+T VVMRD RS+ FGFV Sbjct: 2 KSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 59 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEK-NLQEAADKYQNTN 461 + + +E A+ R K R +E K + + Q Sbjct: 60 TYATVEEVDAAMN--------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK 105 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 +++ + + ++ LR+ F ++G I ++M D +G RG FV F D + + + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 60.1 bits (144), Expect = 5e-09 Identities = 49/172 (28%), Positives = 85/172 (49%) Frame = +3 Query: 123 NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPD 302 NS S + + + NL+ + TE+ L+E+F K T + V ++ +G+SK + F+ F S + Sbjct: 479 NSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFE 535 Query: 303 EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLD 482 +A A+ N ++ GRA + L+ + + A + T L++K L Sbjct: 536 DAKEALNSCNKREIE------GRA-------IRLELQGPRGSPNARSQPSKT-LFVKGLS 581 Query: 483 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 + +E L+E F G++ + V G+S+G GFV F S +DA A M Sbjct: 582 EDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631 Score = 59.3 bits (142), Expect = 9e-09 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 3/181 (1%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 K+ERD + KNL T+D+LKE+F I V DG+SK ++ Sbjct: 388 KKERDA-------RTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIE 436 Query: 288 FESPDEAALAVQDLNGKKFSDKE---WYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT 458 F++ +A ++ G + + +Y G E+ + KN + + + Sbjct: 437 FKTEADAEKTFEEKQGTEIDGRSISLYYTG------EKGQNQDYRGGKNSTWSGE---SK 487 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 L L NL + +E L+E+F + T KV ++ NG S+G F+ F S +DA AL Sbjct: 488 TLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 544 Query: 639 N 641 N Sbjct: 545 N 545 Score = 46.2 bits (108), Expect = 8e-05 Identities = 43/185 (23%), Positives = 82/185 (44%) Frame = +3 Query: 81 KVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG 260 K P +KQ+ + + + FN ++V NL + +LK + V+ G Sbjct: 287 KQKAAPEAKKQKVEGTEPTTAFN-LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIG 345 Query: 261 RSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAA 440 ++ FG+V+FES ++ A++ K F + E++L++ K+ ++ Sbjct: 346 MTRKFGYVDFESAEDLEKALELTGLKVFGN--------------EIKLEKPKGKDSKKER 391 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDAS 620 D L KNL V ++L+E+F + I + +G S+G ++ FK+ DA Sbjct: 392 DA---RTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAE 444 Query: 621 RALAE 635 + E Sbjct: 445 KTFEE 449 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Frame = +3 Query: 321 QDLNGKKFSDKEWYVGRAQKKSEREMELKE---KFEKNLQEAADKYQNTNLYLKNLDDTV 491 +D ++ ++E V A K ++EM ++ + +K E + NL++ NL+ Sbjct: 260 EDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNK 319 Query: 492 DDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 +L+ ++ V+ G +R G+V F+SA+D +AL Sbjct: 320 SAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKAL 365
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 60.1 bits (144), Expect = 5e-09 Identities = 49/172 (28%), Positives = 85/172 (49%) Frame = +3 Query: 123 NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPD 302 NS S + + + NL+ + TE+ L+E+F K T + V ++ +G+SK + F+ F S + Sbjct: 478 NSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFE 534 Query: 303 EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLD 482 +A A+ N ++ GRA + L+ + + A + T L++K L Sbjct: 535 DAKEALNSCNKREIE------GRA-------IRLELQGPRGSPNARSQPSKT-LFVKGLS 580 Query: 483 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 + +E L+E F G++ + V G+S+G GFV F S +DA A M Sbjct: 581 EDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630 Score = 59.3 bits (142), Expect = 9e-09 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 3/181 (1%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 K+ERD + KNL T+D+LKE+F I V DG+SK ++ Sbjct: 387 KKERDA-------RTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIE 435 Query: 288 FESPDEAALAVQDLNGKKFSDKE---WYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT 458 F++ +A ++ G + + +Y G E+ + KN + + + Sbjct: 436 FKTEADAEKTFEEKQGTEIDGRSISLYYTG------EKGQNQDYRGGKNSTWSGE---SK 486 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 L L NL + +E L+E+F + T KV ++ NG S+G F+ F S +DA AL Sbjct: 487 TLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 543 Query: 639 N 641 N Sbjct: 544 N 544 Score = 46.2 bits (108), Expect = 8e-05 Identities = 43/185 (23%), Positives = 82/185 (44%) Frame = +3 Query: 81 KVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG 260 K P +KQ+ + + + FN ++V NL + +LK + V+ G Sbjct: 286 KQKAAPEAKKQKVEGTEPTTAFN-LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIG 344 Query: 261 RSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAA 440 ++ FG+V+FES ++ A++ K F + E++L++ K+ ++ Sbjct: 345 MTRKFGYVDFESAEDLEKALELTGLKVFGN--------------EIKLEKPKGKDSKKER 390 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDAS 620 D L KNL V ++L+E+F + I + +G S+G ++ FK+ DA Sbjct: 391 DA---RTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAE 443 Query: 621 RALAE 635 + E Sbjct: 444 KTFEE 448 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Frame = +3 Query: 324 DLNGKKFSDKEWYVGRAQKKSEREMELKE---KFEKNLQEAADKYQNTNLYLKNLDDTVD 494 D + ++ ++E V A K ++EM ++ + +K E + NL++ NL+ Sbjct: 260 DEDEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKS 319 Query: 495 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 +L+ ++ V+ G +R G+V F+SA+D +AL Sbjct: 320 APELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKAL 364
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 60.1 bits (144), Expect = 5e-09 Identities = 49/172 (28%), Positives = 85/172 (49%) Frame = +3 Query: 123 NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPD 302 NS S + + + NL+ + TE+ L+E+F K T + V ++ +G+SK + F+ F S + Sbjct: 477 NSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFE 533 Query: 303 EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLD 482 +A A+ N ++ GRA + L+ + + A + T L++K L Sbjct: 534 DAKEALNSCNKREIE------GRA-------IRLELQGPRGSPNARSQPSKT-LFVKGLS 579 Query: 483 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 + +E L+E F G++ + V G+S+G GFV F S +DA A M Sbjct: 580 EDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Score = 59.3 bits (142), Expect = 9e-09 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 3/181 (1%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 K+ERD + KNL T+D+LKE+F I V DG+SK ++ Sbjct: 386 KKERDA-------RTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIE 434 Query: 288 FESPDEAALAVQDLNGKKFSDKE---WYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT 458 F++ +A ++ G + + +Y G E+ + KN + + + Sbjct: 435 FKTEADAEKTFEEKQGTEIDGRSISLYYTG------EKGQNQDYRGGKNSTWSGE---SK 485 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 L L NL + +E L+E+F + T KV ++ NG S+G F+ F S +DA AL Sbjct: 486 TLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 542 Query: 639 N 641 N Sbjct: 543 N 543 Score = 46.2 bits (108), Expect = 8e-05 Identities = 43/185 (23%), Positives = 82/185 (44%) Frame = +3 Query: 81 KVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG 260 K P +KQ+ + + + FN ++V NL + +LK + V+ G Sbjct: 285 KQKAAPEAKKQKVEGTEPTTAFN-LFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIG 343 Query: 261 RSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAA 440 ++ FG+V+FES ++ A++ K F + E++L++ K+ ++ Sbjct: 344 MTRKFGYVDFESAEDLEKALELTGLKVFGN--------------EIKLEKPKGKDSKKER 389 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDAS 620 D L KNL V ++L+E+F + I + +G S+G ++ FK+ DA Sbjct: 390 DA---RTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAE 442 Query: 621 RALAE 635 + E Sbjct: 443 KTFEE 447 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Frame = +3 Query: 321 QDLNGKKFSDKEWYVGRAQKKSEREMELKE---KFEKNLQEAADKYQNTNLYLKNLDDTV 491 +D ++ ++E V A K ++EM ++ + +K E + NL++ NL+ Sbjct: 258 EDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNK 317 Query: 492 DDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 +L+ ++ V+ G +R G+V F+SA+D +AL Sbjct: 318 SAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKAL 363
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 59.7 bits (143), Expect = 7e-09 Identities = 29/78 (37%), Positives = 47/78 (60%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 +++ L T E LK +FGK G I+ V++++D +S+ F F+ FE+P +A A +D+N Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 Query: 333 GKKFSDKEWYVGRAQKKS 386 GK K V +A+K S Sbjct: 70 GKSLHGKAIKVEQAKKPS 87 Score = 39.7 bits (91), Expect = 0.008 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 L++ L+ +++ L+ +F + G I+ +++D SRG F+ F++ DA A +MN Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 59.3 bits (142), Expect = 9e-09 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 3/161 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITS-VVVMRDGDGRSKCFGFVNFESPDEAALAVQDL 329 +++ L T+E L+ F FGT+T VVV+ RS+CFGFV + + +EA A+ Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAM--- 65 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT-NLYLKNLDDTVDDEKL 506 +ELK + + L++ L V + L Sbjct: 66 -----------AASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDL 114 Query: 507 RELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRA 626 E F++FGT+ +++ D +G RG GFV F++ D A +A Sbjct: 115 IEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155 Score = 34.7 bits (78), Expect = 0.25 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +3 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSC-KVMRDSNGASRGSGFVAFKSADDASRA 626 Q L++ L+ + LR F FGT+T C V+ SR GFV + + ++A A Sbjct: 5 QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64 Query: 627 LA 632 +A Sbjct: 65 MA 66
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 59.3 bits (142), Expect = 9e-09 Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 6/175 (3%) Frame = +3 Query: 123 NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESP 299 N+ G + ++V L +TT++ L+ F ++G + V+M+D +S+ FGFV F+ P Sbjct: 2 NNQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61 Query: 300 D----EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLY 467 + A L+G+ K Q + R E ++ E + + ++ ++ Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENS----RSNKIF 117 Query: 468 LKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRAL 629 + + + +L+E F FG +T ++ D+ RG GF+ F+ +A+ Sbjct: 118 VGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 172 Score = 47.4 bits (111), Expect = 4e-05 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%) Frame = +3 Query: 111 QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVN 287 Q+++ + + N ++V + E +LKE F +FG +T VV++ D + R + FGF+ Sbjct: 102 QQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFIT 161 Query: 288 FESPDEAALAV----QDLNGKKFSDK 353 FE AV D+ GKK K Sbjct: 162 FEDEQSVDQAVNMHFHDIMGKKVEVK 187 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALA 632 L++ LD + E LR F+++G + C +M+D + SRG GFV FK + LA Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 58.9 bits (141), Expect = 1e-08 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 2/167 (1%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 N++++KNL TT DD+ F + G I S + + + + FV +++ ++ A++ Sbjct: 303 NSIFIKNLPTITTRDDILNFFSEVGPIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKR 361 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 N F K+ V RAQ K ER KF + + + L+L+NL + E L Sbjct: 362 YNNFYFRGKKLLVTRAQDKEER-----AKF-------IESQKISTLFLENLSAVCNKEFL 409 Query: 507 RELFAEFGTITSCKVMRD--SNGASRGSGFVAFKSADDASRALAEMN 641 + L + I K+ D +S SGF+ F++ +DA+R +N Sbjct: 410 KYLCHQ-ENIRPFKIQIDGYDENSSTYSGFIKFRNFEDATRIFNFLN 455 Score = 55.8 bits (133), Expect = 1e-07 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 4/173 (2%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAA 311 S K +++ +L ET TE+ LK IF K+ + S V D +S G++NFE +EA Sbjct: 87 SKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAE 146 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNL---D 482 A+++LN K + KE + + + + F KN TN++ NL + Sbjct: 147 KAMEELNYTKVNGKEIRIMPSLRNT--------TFRKNF--------GTNVFFSNLPLNN 190 Query: 483 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + + F+ +G I SCK+ + + GFV F+ A + N Sbjct: 191 PLLTTRVFYDTFSRYGKILSCKL-----DSRKDIGFVYFEDEKTARNVIKMYN 238
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 58.9 bits (141), Expect = 1e-08 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 2/165 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 V+V L+ + L + F ++GTI V+ DG GRSK +G+V+FE+P+ A AV Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 K+ + + + + ++ N + + +T +++ NL ++ L Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDT-VFVGNLSFNATEDDLS 383 Query: 510 ELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 F G I S ++ D +G +G G+V F D A + + EMN Sbjct: 384 TAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMN 427 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Frame = +3 Query: 375 QKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVM 554 +KK + E +E+ K + + D + +++ L VDD+ L + F E+GTI +V+ Sbjct: 236 EKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295 Query: 555 RD-SNGASRGSGFVAFKSADDASRALA 632 D +G S+G G+V F++ + A A+A Sbjct: 296 MDGQSGRSKGYGYVDFETPEAAKAAVA 322
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 58.9 bits (141), Expect = 1e-08 Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 13/176 (7%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSV-VVMRDGDGRSKCFGFVNFESPDEAALAVQDL 329 ++V L + D L+E+F + G + VV G + FG+V F ++ A++++ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 330 NG------------KKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 KK +K + +K+E K++ + + ADK L ++ Sbjct: 65 TTFEGCKIDVTVAKKKLRNKS----KETRKNENAESPKKEPKHKKAKVADK--KARLIIR 118 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 NL ++ L+ +F +GT+ + + +G RG FV FK+ +A +AL N Sbjct: 119 NLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGAN 174 Score = 55.1 bits (131), Expect = 2e-07 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 7/121 (5%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGK 338 ++NL+ +EDDLK +F +GT+ V + + DG+ + F FV F++ EA A++ N K Sbjct: 117 IRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMK 176 Query: 339 KFSDK----EWYVGRAQKKSEREME---LKEKFEKNLQEAADKYQNTNLYLKNLDDTVDD 497 + + +W V + + K + +K+ ++ +E+ K +++ DD DD Sbjct: 177 EIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRKPKESGKKNCRVEEQVEDSDDEEDD 236 Query: 498 E 500 + Sbjct: 237 D 237 Score = 35.0 bits (79), Expect = 0.19 Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Frame = +3 Query: 372 AQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCK- 548 A+ + + ++ + EK ++ L +D + ++++NL ++E L E+ +FG + + Sbjct: 298 AEDQEDEDVPVSEKKKRKLP--SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRV 355 Query: 549 VMRDSNGASRGSGFVAFKSADDASRALA 632 V+ S+G F F + + A + LA Sbjct: 356 VLHPDTEHSKGCAFAQFMTQEAAQKCLA 383
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 58.5 bits (140), Expect = 2e-08 Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDL 329 ++V L+ T E L+++F K+G I+ VVV++D + RS+ FGFV FE+ D+A A+ + Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 330 NGKKFSDKEWYVGRAQKKSE 389 NGK ++ V +A K S+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87 Score = 42.7 bits (99), Expect = 0.001 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L +++ L ++F+++G I+ V++D SRG GFV F++ DDA A+ M Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 639 N 641 N Sbjct: 68 N 68
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 58.5 bits (140), Expect = 2e-08 Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDL 329 ++V L+ T E L+++F K+G I+ VVV++D + RS+ FGFV FE+ D+A A+ + Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 330 NGKKFSDKEWYVGRAQKKSE 389 NGK ++ V +A K S+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87 Score = 42.7 bits (99), Expect = 0.001 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L +++ L ++F+++G I+ V++D SRG GFV F++ DDA A+ M Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 639 N 641 N Sbjct: 68 N 68
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 58.5 bits (140), Expect = 2e-08 Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 30/195 (15%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFG-KFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQ 323 N V++ N+ +K++ K G +T V + +D +G+S+ G V F+ + A++ Sbjct: 100 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 159 Query: 324 -----DLNGKKFSDKEWYVGRAQKKSERE-----------------MELKEKFEKNLQEA 437 DL+G+ + KE G +++ + M L N Sbjct: 160 TMNKYDLSGRPLNIKEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIP 219 Query: 438 ADKYQN-------TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVA 596 + N + +++ NLD V +KL+E+F+ GT+ + D +G SRG G V Sbjct: 220 PEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVT 279 Query: 597 FKSADDASRALAEMN 641 F+ A +A +A++ N Sbjct: 280 FEQAIEAVQAISMFN 294 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/83 (31%), Positives = 38/83 (45%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 + ++V NL LKE+F GT+ + D DG+S+ G V FE EA A+ Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 292 Query: 327 LNGKKFSDKEWYVGRAQKKSERE 395 NG+ D+ +V K E Sbjct: 293 FNGQFLFDRPMHVKMDDKSVPHE 315 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/72 (36%), Positives = 40/72 (55%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 K N ++V+NL T LKE F + G + + + +G+SK G V F+SP+ A A Sbjct: 521 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKAC 579 Query: 321 QDLNGKKFSDKE 356 + +NG K S +E Sbjct: 580 RIMNGIKISGRE 591 Score = 37.0 bits (84), Expect = 0.049 Identities = 19/64 (29%), Positives = 36/64 (56%) Frame = +3 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 + ++++NL + +KL+E F++ G + ++ + NG S+G G V F S + A +A Sbjct: 521 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKAC 579 Query: 630 AEMN 641 MN Sbjct: 580 RIMN 583
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 58.2 bits (139), Expect = 2e-08 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 3/168 (1%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALA 317 + +++ L TT+D LK F K+G I VVVM+D RS+ FGF+ + Sbjct: 22 QLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY--------- 72 Query: 318 VQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT-NLYLKNLDDTVD 494 + + R K R +E K + ++ + L++ L D D Sbjct: 73 -----SQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHD 127 Query: 495 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRALAE 635 +E LRE F +FG I S ++ D + G RG F+ F D + + + Sbjct: 128 EECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 +++ L T E L+ +FGK+G I V++M+D + +S+ F FV FESP +A A +D+ Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 330 NGKKFSDKEWYVGRAQKKS 386 NGK K V +A K S Sbjct: 70 NGKSLDGKAIKVEQATKPS 88 Score = 38.5 bits (88), Expect = 0.017 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L+ +++ L +F ++G I +M+D SRG FV F+S DA A +M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 639 N 641 N Sbjct: 70 N 70
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDL 329 ++V L+ T E L+++F K+G I+ VVV++D + RS+ FGFV FE+ D+A A+ + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 330 NGKKFSDKEWYVGRAQKKSE 389 NGK ++ V +A K S+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L +++ L ++F+++G I+ V++D SRG GFV F++ DDA A+ M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 639 N 641 N Sbjct: 68 N 68
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDL 329 ++V L+ T E L+++F K+G I+ VVV++D + RS+ FGFV FE+ D+A A+ + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 330 NGKKFSDKEWYVGRAQKKSE 389 NGK ++ V +A K S+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L +++ L ++F+++G I+ V++D SRG GFV F++ DDA A+ M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 639 N 641 N Sbjct: 68 N 68
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDL 329 ++V L+ T E L+++F K+G I+ VVV++D + RS+ FGFV FE+ D+A A+ + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 330 NGKKFSDKEWYVGRAQKKSE 389 NGK ++ V +A K S+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L +++ L ++F+++G I+ V++D SRG GFV F++ DDA A+ M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 639 N 641 N Sbjct: 68 N 68
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 57.8 bits (138), Expect = 3e-08 Identities = 27/86 (31%), Positives = 50/86 (58%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAA 311 G+V N ++V + T E DL++ F ++G++ V ++ D G SK +GFV FE+ ++A Sbjct: 28 GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 87 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSE 389 +Q+ + DK+ +G A +K + Sbjct: 88 KILQEAEKLNYKDKKLNIGPAIRKQQ 113 Score = 47.8 bits (112), Expect = 3e-05 Identities = 18/58 (31%), Positives = 37/58 (63%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 +++ +D ++ LR+ F+++G++ K++ D G S+G GFV F++ +DA + L E Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQE 92
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 57.8 bits (138), Expect = 3e-08 Identities = 27/86 (31%), Positives = 50/86 (58%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAA 311 G+V N ++V + T E DL++ F ++G++ V ++ D G SK +GFV FE+ ++A Sbjct: 28 GTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQ 87 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSE 389 +Q+ + DK+ +G A +K + Sbjct: 88 KILQEAEKLNYKDKKLNIGPAIRKQQ 113 Score = 47.8 bits (112), Expect = 3e-05 Identities = 18/58 (31%), Positives = 37/58 (63%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 +++ +D ++ LR+ F+++G++ K++ D G S+G GFV F++ +DA + L E Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQE 92
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 57.8 bits (138), Expect = 3e-08 Identities = 26/86 (30%), Positives = 51/86 (59%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAA 311 G+V N ++V + T E+DL++ F ++G++ V ++ D G SK +GF+ FE+ ++A Sbjct: 28 GTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQ 87 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSE 389 +Q+ + DK+ +G A +K + Sbjct: 88 KILQEAEKLNYKDKKLNIGPAIRKQQ 113 Score = 47.4 bits (111), Expect = 4e-05 Identities = 17/58 (29%), Positives = 37/58 (63%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 +++ +D ++ LR+ F+++G++ K++ D G S+G GF+ F++ +DA + L E Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQE 92
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 57.8 bits (138), Expect = 3e-08 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Frame = +3 Query: 123 NSPGSVKFNNVYVKNLAET--TTEDDLKEIFGKFGTI-TSVVVMRDGDGRSKCFGFVNFE 293 NSP + +N+YVKNL +T T + L+++F FG+I +S++ G SK +GFV F Sbjct: 376 NSP--IDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR 433 Query: 294 SPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKF-EKNLQEAADKYQNTNLYL 470 + A A LNG K +V A++KS+R L+ F K E + N L++ Sbjct: 434 QIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKALFV 493 Query: 471 K 473 K Sbjct: 494 K 494 Score = 49.3 bits (116), Expect = 1e-05 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 3/65 (4%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEK--LRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRA 626 +NLY+KNLDDTV K L +LF+ FG+I S + N G S+G GFVAF+ + A RA Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441 Query: 627 LAEMN 641 +N Sbjct: 442 KDTLN 446
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 57.8 bits (138), Expect = 3e-08 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 1/163 (0%) Frame = +3 Query: 156 YVKNLAETTTEDDLKEIFG-KFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++ N+ LK++ K G +T V ++ D +G+S+ V F+ + A + LN Sbjct: 72 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 131 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRE 512 S GR K E + + + + A + +T +++ NLD V +KL+E Sbjct: 132 KHSLS------GRPLKVKE---DPDGEHARRAMQKAGRLGST-VFVANLDYKVGWKKLKE 181 Query: 513 LFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 +F+ G + ++ D +G SRG G V F+ + +A +A++ N Sbjct: 182 VFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 224 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/73 (32%), Positives = 36/73 (49%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 + V+V NL LKE+F G + ++ D DG+S+ G V FE EA A+ Sbjct: 163 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 222 Query: 327 LNGKKFSDKEWYV 365 NG+ D+ +V Sbjct: 223 FNGQLLFDRPMHV 235 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = +3 Query: 123 NSPGSV-KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESP 299 ++PG K ++V+NL T LK+ F + G + + + +G+SK G V FESP Sbjct: 603 HAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESP 661 Query: 300 DEAALAVQDLNGKKFSDKE 356 + A A + +NG K S +E Sbjct: 662 EVAERACRMMNGMKLSGRE 680 Score = 32.7 bits (73), Expect = 0.93 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ++++NL + L++ F E G + + + NG S+G G V F+S + A RA MN Sbjct: 614 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 672
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 57.4 bits (137), Expect = 4e-08 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 2/161 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 +++ L+ TT+ DLK+ F KFG + + D GRS+ FGFV F+ E+ V D Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKE-SESVDKVMDQ 155 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 K + K K + M+ KE +K +++ L +EK+R Sbjct: 156 KEHKLNGKV-----IDPKRAKAMKTKEPVKK-------------IFVGGLSPDTPEEKIR 197 Query: 510 ELFAEFGTITSCKV-MRDSNGASRGSGFVAFKSADDASRAL 629 E F FG + S ++ M + RG F+ FK + + + Sbjct: 198 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 238
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 57.4 bits (137), Expect = 4e-08 Identities = 45/158 (28%), Positives = 67/158 (42%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++V NL TED+ K +F K+G V + + K FGF+ ES A +A +L+ Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPGEVFI-----NKGKGFGFIKLESRALAEIAKAELD 345 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRE 512 R +L+ +F + L ++NL V +E L E Sbjct: 346 DTPM---------------RGRQLRVRFATHAAA---------LSVRNLSPYVSNELLEE 381 Query: 513 LFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRA 626 F++FG I V+ D G S G G V F S A +A Sbjct: 382 AFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKA 419 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/55 (38%), Positives = 29/55 (52%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQ 323 V+NL+ + + L+E F +FG I VV+ D GRS G V F S A A + Sbjct: 367 VRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFE 421
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 57.4 bits (137), Expect = 4e-08 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 2/163 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 ++V L+ TT+++L F +FG I VVM++ + GRS+ FGFV F P +Q Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ-- 66 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 NG D R ++ K + LQ+ K ++L L V + LR Sbjct: 67 NGPHTLD------------GRTIDPKPCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLR 113 Query: 510 ELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 F +G +T +M D SRG GF++F+ E Sbjct: 114 TFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD- 326 V++ L TE DL+ F ++G +T VV+M D + +S+ FGF++FE + Sbjct: 98 VFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNER 157 Query: 327 ---LNGKKFSDKE 356 LNGK+ K+ Sbjct: 158 YINLNGKQVEIKK 170
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 57.4 bits (137), Expect = 4e-08 Identities = 45/158 (28%), Positives = 67/158 (42%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++V NL TED+ K +F K+G V + + K FGF+ ES A +A +L+ Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFI-----NKGKGFGFIKLESRALAEIAKAELD 353 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRE 512 R +L+ +F + L ++NL V +E L E Sbjct: 354 DTPM---------------RGRQLRVRFATHAAA---------LSVRNLSPYVSNELLEE 389 Query: 513 LFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRA 626 F++FG I V+ D G S G G V F S A +A Sbjct: 390 AFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKA 427 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/55 (38%), Positives = 29/55 (52%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQ 323 V+NL+ + + L+E F +FG I VV+ D GRS G V F S A A + Sbjct: 375 VRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFE 429
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 57.4 bits (137), Expect = 4e-08 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 2/161 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 +++ L+ TT+ DLK+ F KFG + + D GRS+ FGFV F+ E+ V D Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE-SESVDKVMDQ 157 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 K + K K + M+ KE +K +++ L +EK+R Sbjct: 158 KEHKLNGKV-----IDPKRAKAMKTKEPVKK-------------IFVGGLSPDTPEEKIR 199 Query: 510 ELFAEFGTITSCKV-MRDSNGASRGSGFVAFKSADDASRAL 629 E F FG + S ++ M + RG F+ FK + + + Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 57.4 bits (137), Expect = 4e-08 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 2/161 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 +++ L+ TT+ DLK+ F KFG + + D GRS+ FGFV F+ E+ V D Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE-SESVDKVMDQ 157 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 K + K K + M+ KE +K +++ L +EK+R Sbjct: 158 KEHKLNGKV-----IDPKRAKAMKTKEPVKK-------------IFVGGLSPDTPEEKIR 199 Query: 510 ELFAEFGTITSCKV-MRDSNGASRGSGFVAFKSADDASRAL 629 E F FG + S ++ M + RG F+ FK + + + Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 57.0 bits (136), Expect = 5e-08 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 3/168 (1%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALA 317 + +++ L+ TT+D L+E F ++G +T VVMRD RS+ FGFV + +E + Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84 Query: 318 VQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT-NLYLKNLDDTVD 494 + R K R +E K + + +++ + + + Sbjct: 85 MS--------------ARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTE 130 Query: 495 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 + LR+ F +G I + +VM D +G RG FV F D + + + Sbjct: 131 EYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 432 EAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSA 608 E + Q L++ L D+ LRE F ++G +T C VMRD SRG GFV + Sbjct: 19 EPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCV 78 Query: 609 DDASRALA 632 ++ +++ Sbjct: 79 EEVDASMS 86
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 57.0 bits (136), Expect = 5e-08 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 30/195 (15%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFG-KFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQ 323 N V++ N+ +K++ K G +T V + +D +G+S+ G V F+ + A++ Sbjct: 91 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 150 Query: 324 -----DLNGKKFSDKEWYVGRAQKKSERE-----------------MELKEKFEKNLQEA 437 DL+G+ + KE G +++ + + L N Sbjct: 151 TMNKYDLSGRPLNIKEDPDGENARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIP 210 Query: 438 ADKYQN-------TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVA 596 + N + +++ NLD V +KL+E+F+ GT+ + D +G SRG G V Sbjct: 211 PEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVT 270 Query: 597 FKSADDASRALAEMN 641 F+ A +A +A++ N Sbjct: 271 FEQAIEAVQAISMFN 285 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/83 (31%), Positives = 38/83 (45%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 + ++V NL LKE+F GT+ + D DG+S+ G V FE EA A+ Sbjct: 224 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 283 Query: 327 LNGKKFSDKEWYVGRAQKKSERE 395 NG+ D+ +V K E Sbjct: 284 FNGQFLFDRPMHVKMDDKSVPHE 306 Score = 42.7 bits (99), Expect = 0.001 Identities = 26/72 (36%), Positives = 39/72 (54%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 K N ++V+NL T LKE F + G + + + +G+SK G V FES + A A Sbjct: 512 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKAC 570 Query: 321 QDLNGKKFSDKE 356 + +NG K S +E Sbjct: 571 RIMNGIKISGRE 582 Score = 39.7 bits (91), Expect = 0.008 Identities = 20/64 (31%), Positives = 38/64 (59%) Frame = +3 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 + ++++NL + +KL+E F++ G + ++ + NG S+G G V F+SA+ A +A Sbjct: 512 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKAC 570 Query: 630 AEMN 641 MN Sbjct: 571 RIMN 574
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 56.6 bits (135), Expect = 6e-08 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 3/179 (1%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFV 284 K E P ++ +++ L+ TT++ L+ F ++GT+T VVMRD RS+ FGFV Sbjct: 2 KSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 59 Query: 285 NFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEK-NLQEAADKYQNTN 461 + + ++ A+ R K R +E K + + Q Sbjct: 60 TYATVEKVDAAMN--------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK 105 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 +++ + + ++ LR+ F ++G I ++M D +G RG FV F + + + + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 164
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 56.6 bits (135), Expect = 6e-08 Identities = 42/161 (26%), Positives = 68/161 (42%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 N +Y+ NL TE++LKE+F +G I+ + + K F F+ + A A +D Sbjct: 113 NRLYIGNLTSDVTEEELKELFSPYGEISEAFINAE-----KNFAFLKIDYRANAERAKKD 167 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 L+G+ +K ++ +F N T + +KNL V +E L Sbjct: 168 LDGRMRKNKP---------------IRIRFAPNA---------TTIRVKNLTPFVSNELL 203 Query: 507 RELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 + F FG + ++ D G + G G V F A AL Sbjct: 204 FKSFEVFGQVERAVIIVDDRGKTTGEGIVEFARKSGAMSAL 244
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 56.2 bits (134), Expect = 8e-08 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 +++ L T E L+ +FGK+G I +++M+D + +S+ F FV FESP +A +D+ Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69 Query: 330 NGKKFSDKEWYVGRAQKKS 386 NGK K V +A K S Sbjct: 70 NGKSLDGKAIKVEQATKPS 88 Score = 37.0 bits (84), Expect = 0.049 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L+ +++ L +F ++G I +M+D SRG FV F+S DA +M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69 Query: 639 N 641 N Sbjct: 70 N 70
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 55.8 bits (133), Expect = 1e-07 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 8/161 (4%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEA------A 311 +++ L+ TT++ L+E FG+FG + +VMRD RS+ FGFV F D+A A Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF--MDQAGVDKVLA 79 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTV 491 + +L+ K K + RAQ K M + K +++ L Sbjct: 80 QSRHELDSKTIDPKVAFPRRAQPK----MVTRTK---------------KIFVGGLSVNT 120 Query: 492 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSAD 611 E +++ F +FG + +M D + RG GFV F+S D Sbjct: 121 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 40.4 bits (93), Expect = 0.004 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +3 Query: 90 VGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRS 266 + P V R + ++V L+ TT +D+K+ F +FG + ++M D R Sbjct: 90 IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRH 149 Query: 267 KCFGFVNFESPD 302 + FGFV FES D Sbjct: 150 RGFGFVTFESED 161 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAE 635 +++ L E LRE F +FG + C VMRD SRG GFV F + LA+ Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 55.8 bits (133), Expect = 1e-07 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 3/170 (1%) Frame = +3 Query: 129 PGSVKF---NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESP 299 PG F + ++V NL TE++++++F K+G V + +D K FGF+ E+ Sbjct: 70 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETR 124 Query: 300 DEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNL 479 A +A +L+ K+ L+ +F + + +L ++NL Sbjct: 125 TLAEIAKVELDNMPLRGKQ---------------LRVRFACH---------SASLTVRNL 160 Query: 480 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 V +E L E F+ FG + V+ D G G G V F A +AL Sbjct: 161 PQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 210
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 55.8 bits (133), Expect = 1e-07 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 3/170 (1%) Frame = +3 Query: 129 PGSVKF---NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESP 299 PG F + ++V NL TE++++++F K+G V + +D K FGF+ E+ Sbjct: 67 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETR 121 Query: 300 DEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNL 479 A +A +L+ K+ L+ +F + + +L ++NL Sbjct: 122 TLAEIAKVELDNMPLRGKQ---------------LRVRFACH---------SASLTVRNL 157 Query: 480 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 V +E L E F+ FG + V+ D G G G V F A +AL Sbjct: 158 PQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 207
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 55.8 bits (133), Expect = 1e-07 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 3/170 (1%) Frame = +3 Query: 129 PGSVKF---NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESP 299 PG F + ++V NL TE++++++F K+G V + +D K FGF+ E+ Sbjct: 65 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETR 119 Query: 300 DEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNL 479 A +A +L+ K+ L+ +F + + +L ++NL Sbjct: 120 TLAEIAKVELDNMPLRGKQ---------------LRVRFACH---------SASLTVRNL 155 Query: 480 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 V +E L E F+ FG + V+ D G G G V F A +AL Sbjct: 156 PQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 55.8 bits (133), Expect = 1e-07 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 3/170 (1%) Frame = +3 Query: 129 PGSVKF---NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESP 299 PG F + ++V NL TE++++++F K+G V + +D K FGF+ E+ Sbjct: 65 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETR 119 Query: 300 DEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNL 479 A +A +L+ K+ L+ +F + + +L ++NL Sbjct: 120 TLAEIAKVELDNMPLRGKQ---------------LRVRFACH---------SASLTVRNL 155 Query: 480 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 V +E L E F+ FG + V+ D G G G V F A +AL Sbjct: 156 PQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 55.5 bits (132), Expect = 1e-07 Identities = 35/163 (21%), Positives = 78/163 (47%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++V NL+ TT ++++ +F ++G I+ ++++ FGFV+ +S EA A+Q+L+ Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKN-------FGFVHMDSKSEADEAIQNLH 56 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRE 512 + V ++ K + +T L++ N+ + +++LR Sbjct: 57 HYMLNGMAMNVEMSKGKPK--------------------TSTKLHVGNISSSCTNQELRA 96 Query: 513 LFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 F E+G + C +++D FV + +DA A++ ++ Sbjct: 97 KFEEYGPVVECDIVKD-------YAFVHMERVEDAMEAISGLD 132
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 55.5 bits (132), Expect = 1e-07 Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 6/165 (3%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVM------RDGDGRSKCFGFVNFESPDEAAL 314 +YVKNL +T +++ +++F S V+ R G S FGFV F+ A Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680 Query: 315 AVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVD 494 A+ +NG + + + + + E+++ + + K + T + +KNL Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRK-------QDSSKPKGTKILIKNLPFEAT 733 Query: 495 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 + ++ L +G + S +V + + ++RG F F +A +A+ A+ Sbjct: 734 KKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAM 778 Score = 48.1 bits (113), Expect = 2e-05 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 29/209 (13%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFG 278 V +QER+ S + ++++NL + EDDLK +FG FG + V + D K F Sbjct: 309 VSEQERNIQLIS-ETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFA 367 Query: 279 FVNFESPDEAALAVQDLNGKKFSDK----------------EWYVGRAQKKSEREMELKE 410 +++F D+A A +L+ K F + ++ + + K +RE++ K Sbjct: 368 YIDFHDADDAVRAYLELDAKPFQGRLLHVLPAKARSSILLDDYALSKLPLKKQRELKRKN 427 Query: 411 KFEKNLQEAADKYQNTNLYLKN------------LDDTVDDEKLRELFAEFGTITSCKVM 554 + Y N + + + LD T D +++ E I K Sbjct: 428 TAASSTFSWNSLYMNADAVVTSLASRLGVKKTDILDPTSSDSAVKQALTETHVIQETKNF 487 Query: 555 RDSNGASRGSGFVAFKSADDASRALAEMN 641 + +G AFK+A + L N Sbjct: 488 FEEHGVD----LDAFKNAARSDNVLLVKN 512 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/129 (25%), Positives = 59/129 (45%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGF 281 VRKQ+ G+ + +KNL T+ D++ + G +G + SV V + D ++ F F Sbjct: 710 VRKQDSSKPKGT----KILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAF 765 Query: 282 VNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTN 461 F + EAA A++ L + + A + +M+ EK +EA + + Sbjct: 766 AEFVTAREAANAMRALKNTHLLGRHLVLQYASNATMDDMQ--HAIEKMAKEANAEAAAPS 823 Query: 462 LYLKNLDDT 488 + K L +T Sbjct: 824 ITGKRLIET 832 Score = 34.7 bits (78), Expect = 0.25 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEF----GTITSCKVMRDSNGASRGSGFVAFKSADDASR 623 + + +KN+ D EKL IT V + G SR F+ FK+ +DA + Sbjct: 2 SRIIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADK 61 Query: 624 ALAEMN 641 A+ +N Sbjct: 62 AIRYLN 67
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDL 329 +++ L T ED L++ F K+G I+ VVV++D + RS+ FGFV FE+ D+A A+ + Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 330 NGKKFSDKEWYVGRAQKKS 386 NGK ++ V +A K S Sbjct: 67 NGKSVDGRQIRVDQAGKSS 85 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L+ +++ L + F ++G I+ V++D SRG GFV F++ DDA A+ M Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 639 N 641 N Sbjct: 67 N 67
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 55.5 bits (132), Expect = 1e-07 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 4/188 (2%) Frame = +3 Query: 87 YVGPFVRKQERDN--SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG 260 Y G ++QER S S + + + NL+ + T++ L+E+F K T + V ++ G Sbjct: 464 YTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHG 520 Query: 261 RSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEK-FEKNLQEA 437 + K + F+ F S ++A A+ N +ME++ + LQ + Sbjct: 521 KPKGYAFIEFASFEDAKEALNSCN--------------------KMEIEGRTIRLELQGS 560 Query: 438 ADKYQ-NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADD 614 + Q + L++K L + +E L+E F G++ + V G+S+G GFV F S +D Sbjct: 561 NSRSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEED 618 Query: 615 ASRALAEM 638 A A M Sbjct: 619 AKAAKEAM 626 Score = 50.4 bits (119), Expect = 4e-06 Identities = 41/180 (22%), Positives = 82/180 (45%) Frame = +3 Query: 96 PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCF 275 P +KQ+ + S + FN +++ NL + ++LK + + V+ G ++ F Sbjct: 292 PEAKKQKVEGSEPTTPFN-LFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTGTNRKF 350 Query: 276 GFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 G+V+FES ++ A+ +L G K E + + + + +++ Sbjct: 351 GYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRAAR--------------- 394 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 L KNL + +++L+E+F + I + +G S+G ++ FKS DA + L E Sbjct: 395 -TLLAKNLSFNITEDELKEVFEDAMEIR----LVSQDGKSKGIAYIEFKSEADAEKNLEE 449 Score = 46.6 bits (109), Expect = 6e-05 Identities = 30/99 (30%), Positives = 52/99 (52%) Frame = +3 Query: 93 GPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC 272 G +R + + ++ S ++VK L+E TTE+ LKE F G++ + +V G SK Sbjct: 550 GRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKG 607 Query: 273 FGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSE 389 FGFV+F S ++A A + + + + + A+ K E Sbjct: 608 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 646 Score = 35.8 bits (81), Expect = 0.11 Identities = 23/88 (26%), Positives = 43/88 (48%) Frame = +3 Query: 366 GRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSC 545 G+ +K+ ++ E E +K E ++ NL++ NL+ +L+ +E Sbjct: 279 GKRKKEMTKQKEAPEA-KKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDL 337 Query: 546 KVMRDSNGASRGSGFVAFKSADDASRAL 629 V+ G +R G+V F+SA+D +AL Sbjct: 338 AVVDVRTGTNRKFGYVDFESAEDLEKAL 365
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 55.1 bits (131), Expect = 2e-07 Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 14/180 (7%) Frame = +3 Query: 114 ERDNSPGSVKFNN--------VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRS 266 E + SPG+ N +++ L+ T+ D L++ F KFG I +VMRD RS Sbjct: 2 EANGSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61 Query: 267 KCFGFVNFESPDEAALAV----QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQE 434 + FGFV F P + +L+ K K + RAQ K M + K Sbjct: 62 RGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPK----MVTRTK------- 110 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSAD 611 +++ L E +++ F +FG + +M D + RG GFV F++ D Sbjct: 111 --------KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162 Score = 37.7 bits (86), Expect = 0.029 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 90 VGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRS 266 + P V R + ++V L+ T +D+K+ F +FG + ++M D R Sbjct: 91 IDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRH 150 Query: 267 KCFGFVNFESPD 302 + FGFV FE+ D Sbjct: 151 RGFGFVTFENED 162
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 55.1 bits (131), Expect = 2e-07 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 8/161 (4%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEA------A 311 +++ L+ TT++ L+E FG+FG + +VMRD RS+ FGFV F D+A A Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF--MDQAGVDKVLA 79 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTV 491 + +L+ K K + RAQ K M + K +++ L Sbjct: 80 QSRHELDSKTIDPKVAFPRRAQPK----MVTRTK---------------KIFVGGLSVNT 120 Query: 492 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSAD 611 E ++ F +FG + +M D + RG GFV F+S D Sbjct: 121 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAE 635 +++ L E LRE F +FG + C VMRD SRG GFV F + LA+ Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 90 VGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRS 266 + P V R + ++V L+ TT +D+K F +FG + ++M D R Sbjct: 90 IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRH 149 Query: 267 KCFGFVNFESPD 302 + FGFV FES D Sbjct: 150 RGFGFVTFESED 161
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 55.1 bits (131), Expect = 2e-07 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 8/161 (4%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEA------A 311 +++ L+ TT++ L+E FG+FG + +VMRD RS+ FGFV F D+A A Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF--MDQAGVDKVLA 79 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTV 491 + +L+ K K + RAQ K M + K +++ L Sbjct: 80 QSRHELDSKTIDPKVAFPRRAQPK----MVTRTK---------------KIFVGGLSVNT 120 Query: 492 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSAD 611 E ++ F +FG + +M D + RG GFV F+S D Sbjct: 121 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAE 635 +++ L E LRE F +FG + C VMRD SRG GFV F + LA+ Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 90 VGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRS 266 + P V R + ++V L+ TT +D+K F +FG + ++M D R Sbjct: 90 IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRH 149 Query: 267 KCFGFVNFESPD 302 + FGFV FES D Sbjct: 150 RGFGFVTFESED 161
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 55.1 bits (131), Expect = 2e-07 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 +++ L T E L+ +FGK+G I +++M+D + +S+ F FV ESP +A A +D+ Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDM 69 Query: 330 NGKKFSDKEWYVGRAQK 380 NGK K V +A K Sbjct: 70 NGKSLDGKAIKVEQATK 86 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L+ +++ L +F ++G I +M+D SRG FV +S DA A +M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDM 69 Query: 639 N 641 N Sbjct: 70 N 70
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 55.1 bits (131), Expect = 2e-07 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 4/167 (2%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD---GDGRSKCFGFVNFESPDEAALAVQ 323 ++V + T +E DL+E+F ++G + + ++RD +SK FV F + A A Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77 Query: 324 DLNGKKFSDKEWYVGRAQKKSEREMELKEK-FEKNLQEAADKYQNTNLYLKNLDDTVDDE 500 L+ K +++K EKN + ++ L++ + + Sbjct: 78 ALHNMK----------VLPGMHHPIQMKPADSEKN-----NAVEDRKLFIGMISKKCTEN 122 Query: 501 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 +R +F+ FG I C+++R +G SRG FV F + A A+ M+ Sbjct: 123 DIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMH 169 Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFGFVNFESPDEAALAVQD 326 N+++ +L + + DL ++F FG + S V D SKCFGFV++++P A A+Q Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461 Query: 327 LNGKKFSDKEWYVGRAQKKSE 389 +NG + K V + K++ Sbjct: 462 MNGFQIGMKRLKVQLKRSKND 482 Score = 38.5 bits (88), Expect = 0.017 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Frame = +3 Query: 69 MNDKKVYVG---PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVV 239 +++ KV G P K +V+ +++ +++ TE+D++ +F FG I Sbjct: 79 LHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECR 138 Query: 240 VMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++R DG S+ FV F + A A++ ++ Sbjct: 139 ILRGPDGLSRGCAFVTFTTRTMAQTAIKAMH 169 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRA 626 + NL++ +L D+ L ++F FG + S KV D S+ GFV++ + A A Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 458 Query: 627 LAEMN 641 + MN Sbjct: 459 IQSMN 463
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 55.1 bits (131), Expect = 2e-07 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 4/167 (2%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD---GDGRSKCFGFVNFESPDEAALAVQ 323 ++V + T +E DL+E+F ++G + + V+RD +SK FV F + A A Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77 Query: 324 DLNGKKFSDKEWYVGRAQKKSEREMELKEK-FEKNLQEAADKYQNTNLYLKNLDDTVDDE 500 L+ K +++K EKN + ++ L++ + + Sbjct: 78 ALHNMK----------VLPGMHHPIQMKPADSEKN-----NAVEDRKLFIGMISKKCTEN 122 Query: 501 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 +R +F+ FG I C+++R +G SRG FV F + A A+ M+ Sbjct: 123 DIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169 Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFGFVNFESPDEAALAVQD 326 N+++ +L + + DL ++F FG + S V D SKCFGFV++++P A A+Q Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461 Query: 327 LNGKKFSDKEWYVGRAQKKSE 389 +NG + K V + K++ Sbjct: 462 MNGFQIGMKRLKVQLKRSKND 482 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRA 626 + NL++ +L D+ L ++F FG + S KV D S+ GFV++ + A A Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 458 Query: 627 LAEMN 641 + MN Sbjct: 459 IQSMN 463 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Frame = +3 Query: 69 MNDKKVYVG---PFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVV 239 +++ KV G P K +V+ +++ +++ TE+D++ +F FG I Sbjct: 79 LHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECR 138 Query: 240 VMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++R DG S+ FV F + A A++ ++ Sbjct: 139 ILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 54.7 bits (130), Expect = 2e-07 Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 73/249 (29%) Frame = +3 Query: 114 ERDNSPGSVKFN-NVYVKNLAETTTEDDLKEIFGKFGTITSVVV----MRDGDGRSKC-F 275 E+ N+P + V+V L+ +T + +++ +F GT+ V + +R G Sbjct: 32 EQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGI 91 Query: 276 GFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFE-KNLQE------ 434 FV F + ++ A++ LNGK D+E V +A+ E+ ++ ++K + KN +E Sbjct: 92 AFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETSTS 151 Query: 435 ----------------------------AADKYQN------------------TNLYLKN 476 DK QN ++Y+ Sbjct: 152 VENAESAKGSSDENEANTATAPSSNEANGVDKKQNEIKGKGGSGKNKAKPLPPNSIYVSG 211 Query: 477 LDDTVDDEKLRELFAEFGTITSCKV--------------MRDSNGASRGSGFVAFKSADD 614 L T+ +E L+E+F + T ++ +R RG GFV+F +A+D Sbjct: 212 LSVTLTNEGLKEMFDAYNP-TRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFANAED 270 Query: 615 ASRALAEMN 641 SRA+ EMN Sbjct: 271 QSRAIEEMN 279 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 13/112 (11%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGT-------------ITSVVVMRDGDGRSKCFGFVN 287 N++YV L+ T T + LKE+F + I + +R R + FGFV+ Sbjct: 205 NSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVS 264 Query: 288 FESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAAD 443 F + ++ + A++++NGK+ D V A + +++ + EK E EA++ Sbjct: 265 FANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASE 316
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 54.7 bits (130), Expect = 2e-07 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR------SKCFGFVNFESPDEAAL 314 +YVKNL+ +TT++ L F + D R S +GFV F+S D A Sbjct: 623 LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAART 682 Query: 315 AVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVD 494 A + ++GK V A++ +E + +T + +KNL Sbjct: 683 AQKAMDGKVLDAHTLVVTFARRNAEASTT-----------SISSGGSTKILIKNLPFEAT 731 Query: 495 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 +R+LF+ G + S ++ + + +RG GFV + + +A A+ Sbjct: 732 KRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAM 776 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/62 (37%), Positives = 37/62 (59%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 + L ++ L + D +LRE F++ G +T K+MR +G SR GFV ++S +A +AL Sbjct: 2 SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDY 61 Query: 636 MN 641 N Sbjct: 62 FN 63 Score = 47.0 bits (110), Expect = 5e-05 Identities = 44/191 (23%), Positives = 74/191 (38%), Gaps = 28/191 (14%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 + VKN+ T+ ++++++FG+ G + V++ G V +EA LA + + Sbjct: 503 ILVKNIPYGTSAEEVEKLFGEHGEVDKVLIPPSG-----TIAVVEMPVVNEARLAFRAIA 557 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTN----------------- 461 K+F Y+ +A + ++ EK K ++N Sbjct: 558 YKRFKGGILYLEKAPVGLLTQHKVGEKVVKQAPIVGKSIDSSNPSVDLDGPAGAGAGDEA 617 Query: 462 -----LYLKNLDDTVDDEKLRELFAEFGTITSCKVM------RDSNGASRGSGFVAFKSA 608 LY+KNL + DE+L F ++ R S G GFV FKS Sbjct: 618 VDGATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSI 677 Query: 609 DDASRALAEMN 641 D A A M+ Sbjct: 678 DAARTAQKAMD 688 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/111 (23%), Positives = 52/111 (46%) Frame = +3 Query: 123 NSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPD 302 +S GS K + +KNL T+ D++++F G + SV + + D ++ FGFV + + Sbjct: 714 SSGGSTK---ILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVR 770 Query: 303 EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 EA A++ L + + + S + ++ + K Q + + N Sbjct: 771 EAQSAMEALKHTHLLGRHLVLQWSHLASSTQQQVDMQRSKTKQHFVNTHDN 821 Score = 38.5 bits (88), Expect = 0.017 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 9/117 (7%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFGFVNFESPDEAALAVQDL 329 ++++NL + D++ F FGT+ V + D + SK FV+F P A A + Sbjct: 316 LFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAK 375 Query: 330 NGKKFSDKEWYV-------GRAQKKSEREMELKE-KFEKNLQEAADKYQNTNLYLKN 476 +G F + ++ A+ S++ LK+ + E+ Q+A + + LY+ + Sbjct: 376 DGSTFQGRLLHLLPAVNKDALAETGSKKTATLKQARAEQKKQDATKDFNWSMLYMSS 432 Score = 35.4 bits (80), Expect = 0.14 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Frame = +3 Query: 378 KKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMR 557 K++E + + ++ EK+ + ++ L+++NL +++ F FGT+ + Sbjct: 288 KQAEMQRKAQQAAEKDQKLVDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPL 347 Query: 558 D-SNGASRGSGFVAFKSADDASRALA 632 D AS+G FV+F D + ALA Sbjct: 348 DKQTKASKGLAFVSF---SDPAHALA 370
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 54.7 bits (130), Expect = 2e-07 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 3/168 (1%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALA 317 + +++ L+ TT+D L+E F ++G +T VVMRD RS+ FGFV + +E + Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84 Query: 318 VQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT-NLYLKNLDDTVD 494 + R K R +E K + + +++ + + + Sbjct: 85 MS--------------ARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTE 130 Query: 495 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 + LR+ +G I + +VM D +G RG FV F D + + + Sbjct: 131 EYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 54.3 bits (129), Expect = 3e-07 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 2/103 (1%) Frame = +3 Query: 129 PGSVKFNNVYVKNLAETTTEDDLKEIFG-KFGTITSVVVMRDG-DGRSKCFGFVNFESPD 302 P + +F+ ++V +L+ T TE DL +F +F ++ +V VM D G S+CFGFV F D Sbjct: 187 PSTPEFS-LFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDED 245 Query: 303 EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQ 431 E A+ +++GK F + V A ++ ++L+E+ ++ Q Sbjct: 246 ERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQ 288 Score = 39.3 bits (90), Expect = 0.010 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Frame = +3 Query: 279 FVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKS--EREMELKEKFEKNLQEAADKYQ 452 FV FE+ +A A+ LN + +Q +R L LQ + Sbjct: 132 FVEFETQKDAKFALS-LNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTP 190 Query: 453 NTNLYLKNLDDTVDDEKLRELF-AEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRA 626 +L++ +L T + L LF F ++ + +VM D G+SR GFV F D+ RA Sbjct: 191 EFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRA 250 Query: 627 LAEMN 641 L EM+ Sbjct: 251 LIEMS 255
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 54.3 bits (129), Expect = 3e-07 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 6/159 (3%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAV--- 320 +++ L+ T+ D L++ F KFG I +VMRD RS+ FGFV F P + Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 82 Query: 321 -QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDD 497 +L+ K K + RAQ K M + K +++ L Sbjct: 83 HHELDSKTIDPKVAFPRRAQPK----MVTRTK---------------KIFVGGLSANTVV 123 Query: 498 EKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSAD 611 E +++ F +FG + +M D + RG GFV F++ D Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162 Score = 37.7 bits (86), Expect = 0.029 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 90 VGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRS 266 + P V R + ++V L+ T +D+K+ F +FG + ++M D R Sbjct: 91 IDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRH 150 Query: 267 KCFGFVNFESPD 302 + FGFV FE+ D Sbjct: 151 RGFGFVTFENED 162
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 53.9 bits (128), Expect = 4e-07 Identities = 25/60 (41%), Positives = 39/60 (65%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 L++ NL + V+DE L + F+E+ ++ KV+RD G +RG GFV+FK +D +A E N Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91 Score = 47.8 bits (112), Expect = 3e-05 Identities = 29/109 (26%), Positives = 55/109 (50%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++V NL ++ L + F ++ ++ V+RD +G+++ FGFV+F+ D+ A ++ N Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNL 479 GK Y+G K R + E N + K +N +LY + + Sbjct: 92 GK-------YIGSRPVKLSRATSDVKPNEVNEKTIDSKIRN-SLYSRTI 132
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 53.9 bits (128), Expect = 4e-07 Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD 326 +V+V N+ TE+ LK+IF + G++ S ++ D + G+ K +GF ++ + A A+++ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELK 407 LNG++FS + V A + +E ELK Sbjct: 77 LNGREFSGRALRVDNAASEKNKE-ELK 102
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 53.9 bits (128), Expect = 4e-07 Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD 326 +V+V N+ TE+ LK+IF + G++ S ++ D + G+ K +GF ++ + A A+++ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELK 407 LNG++FS + V A + +E ELK Sbjct: 77 LNGREFSGRALRVDNAASEKNKE-ELK 102
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 53.5 bits (127), Expect = 5e-07 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQ 323 N V NL + ED+L+++FGK G + + + RD G K F FV FES D+AA A+ Sbjct: 176 NTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIA 235 Query: 324 DLN 332 +LN Sbjct: 236 ELN 238 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Frame = +3 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEMN 641 NL +++++LR+LF + G + + RD G +G FV F+S DDA+RA+AE+N Sbjct: 182 NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELN 238
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 53.1 bits (126), Expect = 7e-07 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 2/161 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 ++V L+ T++ DLK+ F KFG + + D GRS+ FGF+ F+ Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE------ 130 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLR 509 K KE + ++ M +K+ K +++ L+ +EK+R Sbjct: 131 --KVLDQKEHRLDGRVIDPKKAMAMKKDPVK------------KIFVGGLNPEATEEKIR 176 Query: 510 ELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRAL 629 E F +FG I + ++ D RG F+ FK D + L Sbjct: 177 EYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 217 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 ++V L TE+ ++E FG+FG I ++ + D + + F F+ F+ D Sbjct: 161 IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPV------- 213 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEK 422 KK +K+++ K + + KE +++ Sbjct: 214 --KKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 242
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD 326 +V+V N+ TE+ LK+IF + G + S ++ D + G+ K +GF ++ + A A+++ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELK 407 LNG++FS + V A + +E ELK Sbjct: 77 LNGREFSGRALRVDNAASEKNKE-ELK 102
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD 326 +V+V N+ TE+ LK+IF + G + S ++ D + G+ K +GF ++ + A A+++ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELK 407 LNG++FS + V A + +E ELK Sbjct: 77 LNGREFSGRALRVDNAASEKNKE-ELK 102
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD 326 +V+V N+ TE+ LK+IF + G + S ++ D + G+ K +GF ++ + A A+++ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELK 407 LNG++FS + V A + +E ELK Sbjct: 77 LNGREFSGRALRVDNAASEKNKE-ELK 102
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD 326 +V+V N+ TE+ LK+IF + G + S ++ D + G+ K +GF ++ + A A+++ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELK 407 LNG++FS + V A + +E ELK Sbjct: 77 LNGREFSGRALRVDNAASEKNKE-ELK 102
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 52.8 bits (125), Expect = 9e-07 Identities = 30/104 (28%), Positives = 51/104 (49%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 V+V NL E+ L E+F + G +T V + +D +G+ K FGFV F+ P+ + A+ LN Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNL 464 G + + V S + FE ++ + Y+N + Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEM 115 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/71 (35%), Positives = 39/71 (54%) Frame = +3 Query: 429 QEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSA 608 QE AD+ +++ NL+ V +E L ELF + G +T + +D G + GFV FK Sbjct: 5 QEEADR----TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 60 Query: 609 DDASRALAEMN 641 + S A+A +N Sbjct: 61 ESVSYAIALLN 71
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 52.8 bits (125), Expect = 9e-07 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Frame = +3 Query: 444 KYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDAS 620 +Y +T LY+ L D+ L++ F+ F +T +VM + G SRG GFV F S D A+ Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86 Query: 621 RALAEMN 641 A++ MN Sbjct: 87 SAISAMN 93 Score = 50.8 bits (120), Expect = 3e-06 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%) Frame = +3 Query: 132 GSVKF--NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPD 302 GS+++ +Y+ L+ T E LK+ F F +T VM + GRS+ +GFVNF S D Sbjct: 24 GSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISED 83 Query: 303 EAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQN 455 A A+ +NG++ + V A+ + L E E+ A+K +N Sbjct: 84 SANSAISAMNGQELNGFNISVNVAKDWPSLPLSLDESIEE-----AEKKEN 129
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 52.8 bits (125), Expect = 9e-07 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 6/179 (3%) Frame = +3 Query: 120 DNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC------FGF 281 D P + +V+VKNL TT L + F V D ++K FGF Sbjct: 597 DERPATAS-TSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGF 655 Query: 282 VNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTN 461 V F S + A +A + ++G + + + + + E +K A D + Sbjct: 656 VEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKK-------AID----SK 704 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 + +KNL + +++LF FG++ + +V + N SRG F + SA +A A++ + Sbjct: 705 ILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSAL 763 Score = 46.2 bits (108), Expect = 8e-05 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSV-VVMRDGDGRSKCFGFVNFESPDEAALA 317 K ++++NL T E+D +++F ++G + V + + G+ K F V FE P+ A A Sbjct: 299 KTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAA 358 Query: 318 VQDLNGKKFSDKEWYV--GRAQKKSER--EMELKEKFEKNLQEAADK 446 + +GK F + ++ G+ +K R E +LK K QE K Sbjct: 359 YEAQDGKIFQGRLLHILPGKPKKDYNRLDEHDLKNLPLKKQQELKRK 405 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/98 (25%), Positives = 48/98 (48%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 + + +KNL T+ D++++FG FG++ +V V + + S+ F F + S EA A+ Sbjct: 703 SKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSA 762 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAA 440 L G + + AQ + E E+ + + + A Sbjct: 763 LQGTHLLGRRLVLQYAQADASNAEEEIERMQATVSKQA 800 Score = 35.0 bits (79), Expect = 0.19 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKF----------GTITSVVVMRDGDGRSKCFGFVNFES 296 + + VKNL E LK+ F IT V V+R DG+++ FGFV F S Sbjct: 2 SRLIVKNLPPYLDEAGLKKHFSTVKDPKSAGFAPSDITDVKVVRARDGKTRRFGFVGFRS 61 Query: 297 PDEAALAVQ 323 + A AV+ Sbjct: 62 DETAEAAVK 70 Score = 33.5 bits (75), Expect = 0.55 Identities = 39/191 (20%), Positives = 74/191 (38%), Gaps = 28/191 (14%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 + VKN TT+ ++ E+F ++G + V++ G V F+ +A A L Sbjct: 487 ILVKNFPFGTTQPEIAEMFSEYGDLYKVMMPPAG-----TIAIVIFKHIPDARAAFAKLA 541 Query: 333 GKKFSDKEWYVGRAQK----------------KSEREMELKEK------FEKNLQEAADK 446 ++F Y+ + K K ++ + +++K + + Sbjct: 542 FRRFKTSILYLEKGPKNLLPNEKMESDEVEHVKQDKIVTIEDKLSASDVMDTGSNDERPA 601 Query: 447 YQNTNLYLKNLDDTVDDEKLRELFAEFG--TITSCKVMRDSNG----ASRGSGFVAFKSA 608 +T++++KNL+ L + F + K+ DS S G GFV F S Sbjct: 602 TASTSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSK 661 Query: 609 DDASRALAEMN 641 + A A M+ Sbjct: 662 EAAEIAQKAMD 672 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 10/68 (14%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEF----------GTITSCKVMRDSNGASRGSGFVAFKS 605 + L +KNL +D+ L++ F+ IT KV+R +G +R GFV F+S Sbjct: 2 SRLIVKNLPPYLDEAGLKKHFSTVKDPKSAGFAPSDITDVKVVRARDGKTRRFGFVGFRS 61 Query: 606 ADDASRAL 629 + A A+ Sbjct: 62 DETAEAAV 69 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKV-MRDSNGASRGSGFVAFKSADDASRA 626 L+L+NL T +E R+LF+++G + + + G +G V F+ ++A A Sbjct: 303 LFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAA 358
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 52.4 bits (124), Expect = 1e-06 Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 24/188 (12%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 N +++ L TED +KE+ FG + + + D G SK + F + P A+ Sbjct: 291 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAG 350 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTN-----------LYLK 473 LNG + DK+ V A +R NL +A + L L Sbjct: 351 LNGMQLGDKQLVVQLACANQQRH-------NTNLPNSASAIAGIDLSQGAGRATEILCLM 403 Query: 474 NL--------DDTVDD--EKLRELFAEFGTITSCKVMR---DSNGASRGSGFVAFKSADD 614 N+ DD ++ E +R+ +++G + S ++ R D G FV F S D Sbjct: 404 NMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFASTSD 463 Query: 615 ASRALAEM 638 RA A + Sbjct: 464 CQRAQAAL 471 Score = 38.1 bits (87), Expect = 0.022 Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 4/129 (3%) Frame = +3 Query: 267 KCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQ--KKSEREMELKEKFEKN--LQE 434 K F F+ F S DE + +G F ++ V R + + S+ ++ + + + + Sbjct: 230 KNFAFIEFRSIDETTAGMA-FDGINFMGQQLKVRRPRDYQPSQNTFDMNSRMPVSTIVVD 288 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADD 614 +A+K +++ L + + +++++EL FG + + + DS G S+G F + Sbjct: 289 SANK-----IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTL 343 Query: 615 ASRALAEMN 641 +A+A +N Sbjct: 344 TDQAIAGLN 352
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 52.0 bits (123), Expect = 1e-06 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 6/167 (3%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESP---DEAALAV 320 +++ L TT+++LK F K+G I VVVM+D RS+ FGF+ + DEA + Sbjct: 33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS- 91 Query: 321 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT-NLYLKNLDDTVDD 497 R K R +E K + ++ + L++ L D D+ Sbjct: 92 ----------------RPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDE 135 Query: 498 EKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 + +R+ F FG I ++ D G RG FV F D + + + Sbjct: 136 QSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 52.0 bits (123), Expect = 1e-06 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDL 329 ++V L T E L++ F FG I+ VVV++D + RS+ FGF+ F +P+ A++A++ + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 330 NGKKFSDKEWYVGRAQKKS 386 NG+ ++ V A K + Sbjct: 68 NGESLDGRQIRVDHAGKSA 86 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L+ D++ L + F+ FG I+ V++D SRG GF+ F + + AS A+ M Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 639 N 641 N Sbjct: 68 N 68
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 52.0 bits (123), Expect = 1e-06 Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Frame = +3 Query: 168 LAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFGFVNFESPDEAALAVQDLNGKKF 344 +++ T+E L+E F FG I + V+RD + SK FV F +A A+++++G+ Sbjct: 32 ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQ-- 89 Query: 345 SDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAE 524 +G K + + + + ++ D+ + T +++ + + +E LRE F Sbjct: 90 -----CLGPNDTKPIKVFIAQSRSSGSHRDVEDE-ELTRIFVM-IPKSYTEEDLREKFKV 142 Query: 525 FGTITSCKVMRDS-NGASRGSGFVAFKSADDASRAL 629 +G I C V+++ G S+G G+V + A++A+ Sbjct: 143 YGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAI 178
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 52.0 bits (123), Expect = 1e-06 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 4/171 (2%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALA 317 K N++++ NL T TE+ L++IF ++ + S V RD +S +G++NF+ ++A A Sbjct: 109 KTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESA 168 Query: 318 VQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNL---DDT 488 ++ N F +E + + K + F KN+ TN++ NL + Sbjct: 169 RKEFNYTVFFGQEVKIMPSMKNT--------LFRKNI--------GTNVFFSNLPLENPQ 212 Query: 489 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + + E+G + SC + R N GFV F + A + + N Sbjct: 213 LTTRSFYLIMIEYGNVLSCLLERRKN-----IGFVYFDNDISARNVIKKYN 258 Score = 40.4 bits (93), Expect = 0.004 Identities = 30/132 (22%), Positives = 58/132 (43%) Frame = +3 Query: 120 DNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESP 299 +N + + + VKNL TT++++ + F G I SV + + + FV +++ Sbjct: 304 NNLSDNARSKTILVKNLPSDTTQEEVLDYFSTIGPIKSVFI-SEKQANTPHKAFVTYKNE 362 Query: 300 DEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNL 479 +E+ A + LN F + +VG + +K + + T +YLKNL Sbjct: 363 EESKKAQKCLNKTIFKNHTIWVGPGK-------------DKPVHNQIGTNKKTKVYLKNL 409 Query: 480 DDTVDDEKLREL 515 + E + +L Sbjct: 410 SFNCNKEFISQL 421
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 52.0 bits (123), Expect = 1e-06 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 6/182 (3%) Frame = +3 Query: 114 ERDNSPGSVKF-NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVN 287 +R+N G + +++ L TT++ LK+ F ++G I VVVM+D RS+ FGF+ Sbjct: 5 DRENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFIT 64 Query: 288 FESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKE---KFEKNLQEAADKYQNT 458 + A V D R K R +E K + E EA + Sbjct: 65 Y----SRAHMVDDAQN----------ARPHKVDGRVVEPKRAVPRTEIGRPEAGATVK-- 108 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 L++ + + +++ LR+ F ++GT+ S ++ D RG FV F D + Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLS 168 Query: 636 MN 641 N Sbjct: 169 RN 170
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 51.6 bits (122), Expect = 2e-06 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 5/168 (2%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++V + T +D+ + F +G I +M FGFV E +A V D Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMNG-------FGFVEVEDARDARDIVNDFQ 58 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNT-----NLYLKNLDDTVDD 497 GK+F V A+ + R +E AA KY L ++NL + V Sbjct: 59 GKEFMGSRIVVEPARGERRRRENFRE-------SAASKYPRPRRTGFRLIVENLSEDVSW 111 Query: 498 EKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + L+++ + G T D++ + G+G V F + +D AL +N Sbjct: 112 QDLKDVMRKAGEPT----FTDAHRENPGAGVVEFSTEEDMRNALTSLN 155
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 51.2 bits (121), Expect = 3e-06 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 6/169 (3%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR------SKCFGFVNFESPDEAA 311 +++VKNL +TT L E F F V D + S FGF+ F + ++A Sbjct: 613 SIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAG 672 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTV 491 + ++G K + ++ K+ + + K + + +KNL Sbjct: 673 AVIAAMDGAVIDGH---------KIQLKISHKQSSLPKTSKGSKKKISGKIIVKNLPFEA 723 Query: 492 DDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 + + ELF+ FG + S +V + + ++RG FV F +A A+ ++ Sbjct: 724 TRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQL 772 Score = 47.4 bits (111), Expect = 4e-05 Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Frame = +3 Query: 126 SPGSVK--FNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESP 299 S GS K + VKNL T D+ E+F FG + SV V + D ++ F FV F P Sbjct: 703 SKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLP 762 Query: 300 DEAALAVQDLNGKKFSDKEWYVGRAQKKSE--REMELKEKFEKNLQEAADKYQNTNLYLK 473 EA A+ L G + + A+++S+ E K + Q A K K Sbjct: 763 SEAENAMDQLQGVHLLGRRLVMQYAEQESDDVEEQISKMTMKMKKQAAVSKMGALRNSGK 822 Query: 474 NLDDTVDDE 500 D DDE Sbjct: 823 RKIDMSDDE 831 Score = 42.0 bits (97), Expect = 0.002 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 32/195 (16%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 + VKN TT ++L E+F FG I +++ G + + A A L+ Sbjct: 490 ILVKNFPHGTTREELAELFLPFGKIERMLMPPSG-----TIAIIQYRDVPAARGAFTKLS 544 Query: 333 GKKFSDKEWYVGRAQK----KSEREMELKE---------KFEKNLQEAADKYQNT----- 458 K+F Y+ + K + R EL E + +K++++ D T Sbjct: 545 YKRFKAPILYLEKGPKDCFSREPRGDELLEGDAAPEDVKEIKKSVEDVMDADSKTPSSEA 604 Query: 459 --------NLYLKNLDDTVDDEKLRELFAEFG--TITSCKVMRDSNGA----SRGSGFVA 596 ++++KNL+ + +L E F F + K D + S G GF+ Sbjct: 605 TAIDGPTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIE 664 Query: 597 FKSADDASRALAEMN 641 F++ + A +A M+ Sbjct: 665 FRTKEQAGAVIAAMD 679 Score = 40.0 bits (92), Expect = 0.006 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 3/86 (3%) Frame = +3 Query: 393 EMELKEKFEKNLQEAA-DKYQNTN-LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS- 563 E E+ ++ E + +EAA K + T L+L+N+ +E ++LF+ +G + V D+ Sbjct: 278 EQEVPQEDEVSAEEAALTKIRATGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTR 337 Query: 564 NGASRGSGFVAFKSADDASRALAEMN 641 G S+G +V FK + A+ A E++ Sbjct: 338 TGQSKGFAYVLFKDPEHAANAYIELD 363 Score = 37.0 bits (84), Expect = 0.049 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 13/118 (11%) Frame = +3 Query: 210 GKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNG-------------KKFSD 350 G IT V +++D G S+ F F+ + S +A A++ NG K F+D Sbjct: 32 GSEDQITDVKIVKDKSGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEVAMAKSFAD 91 Query: 351 KEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAE 524 +K+ E L+E+ ++ L A+K Q +D + K + F E Sbjct: 92 PRVPTPMREKRREALKRLREREDRIL---AEKRQKQTKPQHGIDAEISKNKQLQEFIE 146
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 51.2 bits (121), Expect = 3e-06 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 15/190 (7%) Frame = +3 Query: 114 ERDNSPGSVKFNNVYVKN------LAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKC 272 E ++ GS + NVY K L TE +++++ G V ++R+ G + Sbjct: 76 ENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAG 135 Query: 273 FGFVNFESPDEAALAVQDLNGKKFSDKE------WYVGRAQKKSEREMELKEKFEKNLQE 434 + FV F SP EA+ A+ +N K W G + EK++ + Sbjct: 136 YCFVEFASPHEASSAMS-MNNKPIPGTNHLFKLNWASGGGLR------------EKSISK 182 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAE-FGTITSCKVMRD-SNGASRGSGFVAFKSA 608 A++ ++++ +L V++ + LFA + + S K+M D SRG GFV F Sbjct: 183 ASEY----SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238 Query: 609 DDASRALAEM 638 +D ALAEM Sbjct: 239 NDQKSALAEM 248
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 51.2 bits (121), Expect = 3e-06 Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 3/174 (1%) Frame = +3 Query: 129 PGSVKF---NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESP 299 P KF N +YV NL T+D+L+E+F +G I+ + D K F F+ + Sbjct: 293 PTETKFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLD-----KNFTFLKVDYH 347 Query: 300 DEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNL 479 A A + L+G + +L+ +F N T L + NL Sbjct: 348 PNAEKAKRALDG---------------SMRKGRQLRVRFAPNA---------TILRVSNL 383 Query: 480 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 V +E L + F FG I + D G G G V F AS L N Sbjct: 384 TPFVSNELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCN 437
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 51.2 bits (121), Expect = 3e-06 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 31/163 (19%) Frame = +3 Query: 108 KQERDNSP---------GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSV-VVMRDGD 257 K+E+D P GS N++V L+ TT DLK +F K+G + VV Sbjct: 385 KEEKDIKPIIKDEKGRVGSGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARS 444 Query: 258 GRSKCFGFVNFESPDEAALAVQDLN-------------------GKKFSDKEWYVGRAQK 380 ++C+GFV + DEA + L+ GKK SD++ + +K Sbjct: 445 PGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNEPAGKKLSDRKECEVKKEK 504 Query: 381 KS--EREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEK 503 S +R ++ K EK + + +K + K +D +EK Sbjct: 505 LSSVDRHHSVEIKIEKTVIKKEEKIEKKE--EKKPEDIKKEEK 545
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 51.2 bits (121), Expect = 3e-06 Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 6/170 (3%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKF-GTITSVVVMR-----DGDGRSKCFGFVNFESPDEAA 311 ++++KNL +TT +L + F F G + + V + G S FGFV F + ++A Sbjct: 664 SIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQAN 723 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTV 491 + ++G + + + +++ + K K K ++ + +KNL Sbjct: 724 AVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNK---------KSGKIIVKNLPFEA 774 Query: 492 DDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + + ELF FG + S +V + + ++RG FV F +A A+ +++ Sbjct: 775 TRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLH 824 Score = 50.4 bits (119), Expect = 4e-06 Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 28/146 (19%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKF---------------GTITSVVVMRDGDGRSKCFGF 281 + + VK L T+D+L+E F K IT V ++RD +G S+ FGF Sbjct: 2 SRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFGF 61 Query: 282 VNFESPDEAALAVQDLNG-------------KKFSDKEWYVGRAQKKSEREMELKEKFEK 422 + + + ++A AV+ NG K F+D +K+ E +EK EK Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMKEKRREALKRFREKEEK 121 Query: 423 NLQEAADKYQNTNLYLKNLDDTVDDE 500 LQE K + + +N +DDE Sbjct: 122 LLQEENRKKKKVD---ENKHSNIDDE 144 Score = 48.5 bits (114), Expect = 2e-05 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 30/208 (14%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 + +D +P V N + A D+ +E G+ + S+ ++D D G VN Sbjct: 205 ENNKDEAPNLVIENESDDEYSALNRNRDEDQEDAGEEEKMISISNLKDTD-----IGLVN 259 Query: 288 FESPDEAALAVQDLN---GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQE-------- 434 ++ + + N +K SD +W+ R + E E E +EK E Sbjct: 260 DDANSDEKENEKRRNLAQDEKVSDLDWFKQRRVRIKESEAETREKSSSYATEQNESLDTK 319 Query: 435 -----------------AADKYQNT-NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD 560 A +K T L+L+N+ T +E R+LF+ FG + V D Sbjct: 320 KEEQPERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALD 379 Query: 561 S-NGASRGSGFVAFKSADDASRALAEMN 641 + G S+G +V FK + +A A E++ Sbjct: 380 TRTGQSKGFAYVLFKDSKNAVNAYVELD 407 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/65 (38%), Positives = 34/65 (52%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 K + VKNL T D+ E+F FG + SV V + D ++ F FV F P EA A+ Sbjct: 761 KSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAM 820 Query: 321 QDLNG 335 L+G Sbjct: 821 DQLHG 825 Score = 38.9 bits (89), Expect = 0.013 Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 39/202 (19%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 + VKN TT ++L E+F +G + +++ G V F A A L+ Sbjct: 534 ILVKNFPFGTTREELGEMFLPYGKLERLLMPPAG-----TIAIVQFRDTTSARAAFTKLS 588 Query: 333 GKKFSDKEWYVGR-------------------AQKKSEREMELKE------KFEKNLQEA 437 K+F D Y+ R + K+ E +E+K + K++ E Sbjct: 589 YKRFKDGIIYLERGPKDCFTKPAEADDLINNTSAKEEENPVEVKPSSNDLMEANKDVTEG 648 Query: 438 ADKYQN--------TNLYLKNLDDTVDDEKLRELFAEFGTITSCKV------MRDSNGAS 575 + + ++++KNL+ + ++ L + F F +V S Sbjct: 649 SSNAHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLS 708 Query: 576 RGSGFVAFKSADDASRALAEMN 641 G GFV F++ + A+ +A M+ Sbjct: 709 MGFGFVEFRTKEQANAVIAAMD 730 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 15/77 (19%) Frame = +3 Query: 456 TNLYLKNLDDTVDDEKLRELFAEF---------------GTITSCKVMRDSNGASRGSGF 590 + + +K L + D+ LRE F + IT K++RD NG SR GF Sbjct: 2 SRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESRRFGF 61 Query: 591 VAFKSADDASRALAEMN 641 + +++ +DA A+ N Sbjct: 62 IGYRNEEDAFDAVEYFN 78
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/90 (31%), Positives = 46/90 (51%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAA 311 G++ N ++V ++ TTE DL +F +GT+ S ++ D G SK +GFV FE+ EA Sbjct: 28 GTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEAQ 87 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSEREME 401 D D++ + A KK ++ Sbjct: 88 RLQADGECVVLRDRKLNIAPAIKKQPNPLQ 117 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Frame = +3 Query: 435 AADKYQN---TNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKS 605 AA KY +++ + + L +F+ +GT+ S K++ D G S+G GFV F++ Sbjct: 23 AAPKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFET 82 Query: 606 ADDASRALAE 635 +A R A+ Sbjct: 83 EQEAQRLQAD 92
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 50.8 bits (120), Expect = 3e-06 Identities = 38/156 (24%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Frame = +3 Query: 168 LAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFGFVNFESPDEAALAVQDLNGKKF 344 +++ T+E L+E F FG I + V+RD + SK FV F +A A+++++G+ Sbjct: 32 ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQ-- 89 Query: 345 SDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAE 524 +G + K + + + + ++ D+ + T +++ + + +E LRE F Sbjct: 90 -----CLGPSDTKPIKVFIAQSRSSGSHRDVEDE-ELTRIFVM-IPKSYTEEDLREKFKV 142 Query: 525 FGTITSCKVMRDS-NGASRGSGFVAFKSADDASRAL 629 +G I C ++++ G S+G G+V + A++A+ Sbjct: 143 YGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 50.8 bits (120), Expect = 3e-06 Identities = 38/156 (24%), Positives = 78/156 (50%), Gaps = 2/156 (1%) Frame = +3 Query: 168 LAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFGFVNFESPDEAALAVQDLNGKKF 344 +++ T E L+E F FG I + V+RD + SK FV F +A A+++++G+ Sbjct: 32 ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQ-- 89 Query: 345 SDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAE 524 +G K + + + + ++ D+ + T +++ + + +E LRE F Sbjct: 90 -----CLGPNDTKPIKVFIAQSRSSGSHRDVEDE-ELTRIFVM-IPKSYTEEDLREKFKV 142 Query: 525 FGTITSCKVMRDS-NGASRGSGFVAFKSADDASRAL 629 +G I C ++++ G S+G G+V + A++A+ Sbjct: 143 YGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 50.8 bits (120), Expect = 3e-06 Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 19/183 (10%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQ 323 + +Y+ NL ED + E+ FG + S ++++ DG SK F F F++P +A +A+ Sbjct: 310 DKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAIS 369 Query: 324 DLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAA----DKYQNTNLYLKNL---D 482 L+GK + + A + M K L E A L L NL D Sbjct: 370 GLDGKDTYGNKLHAQFACVGLNQAMIDKSNGMAILTELAKASSQSIPTRVLQLHNLITGD 429 Query: 483 DTVDDEKLREL-------FAEFGTITSCKVMRD----SNGASRGSGFVAFKSADDASRAL 629 + +D ++ ++ F+ +G + K+ R ++G G FV + A A+ Sbjct: 430 EIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAM 489 Query: 630 AEM 638 EM Sbjct: 490 EEM 492 Score = 35.4 bits (80), Expect = 0.14 Identities = 17/61 (27%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 +Y+ NL + ++++ EL FG + S +++++ ++G+S+G F FK+ DA A++ + Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371 Query: 639 N 641 + Sbjct: 372 D 372
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 50.8 bits (120), Expect = 3e-06 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 ++V ++ T TE++++ F + G + V +++D G+ + FV + + +A A++ L Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181 Query: 330 NGK---KFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDE 500 + + V A + ER L+ K L++ +L+ ++ Sbjct: 182 HNQITLPGGTGPVQVRYADGERERIGTLEFK----------------LFVGSLNKQATEK 225 Query: 501 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ++ E+F +FG + +MRD SRG GFV + S + A A+ +N Sbjct: 226 EVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/68 (36%), Positives = 43/68 (63%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAA 311 G+++F ++V +L + TE +++EIF +FG + V +MRD +S+ GFV + S + A Sbjct: 207 GTLEFK-LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAM 265 Query: 312 LAVQDLNG 335 A+ LNG Sbjct: 266 AAIDGLNG 273
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 50.8 bits (120), Expect = 3e-06 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 6/183 (3%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC----- 272 K++ D ++++KNL TT L + F F V D + K Sbjct: 627 KEDEDEQVVDGPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSM 686 Query: 273 -FGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 FGFV F + ++A + ++G + + + ++ + K+K + Sbjct: 687 GFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEKKKAK---------- 736 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRAL 629 N + +KNL + + ELF FG + S +V + + ++RG FV F +A A+ Sbjct: 737 -NGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAM 795 Query: 630 AEM 638 ++ Sbjct: 796 DQL 798 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/100 (30%), Positives = 48/100 (48%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 K + VKNL T D+ E+F FG + SV V + D ++ F FV F P EA A+ Sbjct: 736 KNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAM 795 Query: 321 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAA 440 L G + + A++++ E E+ K +++ A Sbjct: 796 DQLQGVHLLGRRLVMQPAEQEAANAEEELERMTKKVRKQA 835 Score = 47.0 bits (110), Expect = 5e-05 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 25/151 (16%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKF-----------GTITSVVVMRDGDGRSKCFGFVNFE 293 + V VK L TE +L++ F K G IT + ++++ +G+S+ F F+ ++ Sbjct: 2 SRVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNREGKSRRFAFIGYK 61 Query: 294 SPDEAALAVQDLNG-------------KKFSDKEWYVGRAQKKSEREMELKEKFEKNLQE 434 + +A AV +G K F+D +KK E L+EK EK L+E Sbjct: 62 NEQDALDAVNYFDGSFIYTSKIEVDMAKSFADPRVPKSMKEKKREALKRLREKEEKLLEE 121 Query: 435 AADKYQNTNLYLK-NLDDTVDDEKLRELFAE 524 K + + K N+D ++ +K + F E Sbjct: 122 KNKKLKVQDTKSKINIDAEIEKDKQLKEFIE 152 Score = 36.6 bits (83), Expect = 0.065 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 26/128 (20%) Frame = +3 Query: 336 KKFSDKEWYVGRAQKKSEREMELKEKFEKNLQ------------------------EAAD 443 ++ SD +W R + E ++ E+F N+Q +A Sbjct: 260 EEISDMDWIKQRRVRIRENGEKVGEEFATNVQDKESEENSQATPAEELQEEIPDEEQAIA 319 Query: 444 KYQNT-NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDA 617 K Q T L+L+N+ + ++ ++LF+ +G + V D+ G S+G +V F ++A Sbjct: 320 KIQKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEA 379 Query: 618 SRALAEMN 641 +A E++ Sbjct: 380 VQAYIELD 387 Score = 35.4 bits (80), Expect = 0.14 Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 36/208 (17%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDE 305 SP + VKN TT ++L E+F FG + +++ G V F Sbjct: 505 SPSQRDDRVILVKNFPFGTTREELGELFVPFGKLERLLMPPAG-----TIAIVQFRDIAS 559 Query: 306 AALAVQDLNGKKFSDKEWYVGRA-----QKKSEREMELKEKFEKNLQEA----ADKYQN- 455 A L K+F Y+ + K + E ++ EK+ +EA AD ++ Sbjct: 560 GRSAFSKLAFKRFKGTVIYLEKGPKDCFTKAASNEDAMEHDEEKSAKEAGPSSADLLESV 619 Query: 456 --------------------TNLYLKNLDDTVDDEKLRELFAEFGTITSCKV------MR 557 ++++KNL+ ++L + F F +V + Sbjct: 620 SSKKTEDKEDEDEQVVDGPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQ 679 Query: 558 DSNGASRGSGFVAFKSADDASRALAEMN 641 + S G GFV F++ + A+ ++ M+ Sbjct: 680 KNKVLSMGFGFVEFRTKEQATAVISAMD 707
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 50.4 bits (119), Expect = 4e-06 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 ++V L+ T++ DLK+ F KFG + + D + GRS+ FGF+ F+ A +V+ Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD----AASVE-- 123 Query: 330 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLD-DTVDDEKL 506 K KE + ++ M +K+ K + ++ L+ ++ +EK+ Sbjct: 124 --KVLDQKEHRLDGRVIDPKKAMAMKKDPVKKI------------FVGGLNPESPTEEKI 169 Query: 507 RELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSADDASRAL 629 RE F EFG I + ++ D RG F+ FK + + L Sbjct: 170 REYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 211 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +3 Query: 174 ETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDLNGKKFSD 350 E+ TE+ ++E FG+FG I ++ + D + + F F+ F+ + KK + Sbjct: 162 ESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPV---------KKVLE 212 Query: 351 KEWYVGRAQKKSEREMELKEKFEK 422 K+++ K + + KE +++ Sbjct: 213 KKFHTVSGSKCEIKVAQPKEVYQQ 236
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDL 329 ++V L T E L++ F FG I+ VVV++D + RS+ FGF+ F +P+ A+ A++ + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 330 NGKKFSDKEWYVGRAQKKS 386 NG+ ++ V A K + Sbjct: 68 NGESLDGRQIRVDHAGKSA 86 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 L++ L+ D++ L + F+ FG I+ V++D SRG GF+ F + + AS A+ M Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 639 N 641 N Sbjct: 68 N 68
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 50.1 bits (118), Expect = 6e-06 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQ 323 N ++V L TT++DL+ IF +FG I S V+RD G S C+ F+ FE ++ A Sbjct: 240 NVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFF 299 Query: 324 DLNGKKFSDKEWYVGRAQKKSEREMELK-EKFEKNLQEAADKYQN--TNLYLKNLDDTVD 494 ++ D+ +V +Q ++ + + K K+ K+ + +K Q+ NL LK Sbjct: 300 KMDNVLIDDRRIHVDFSQSVAKVKWKGKGGKYTKSDFKEYEKEQDKPANLVLKEKVKPKQ 359 Query: 495 DEKLRELFAEFG 530 D K + E G Sbjct: 360 DAKYDLILDEQG 371 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Frame = +3 Query: 318 VQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDD 497 + D G+ + E +A+K+++ + L E +L +A K L++ L+ D Sbjct: 197 IDDFKGRSAEEVEEI--KAEKEAKTQAILLEMVG-DLPDADIKPPENVLFVCKLNPVTTD 253 Query: 498 EKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 E L +F+ FG I SC+V+RD G S F+ F+ +D +A +M+ Sbjct: 254 EDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMD 302
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 49.7 bits (117), Expect = 7e-06 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Frame = +3 Query: 156 YVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDLN 332 +V LA T ++DL+ F +FG + ++ D + GRS+ FGFV F+ A++++N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 333 GKKFSDKEWYVGRAQKK 383 GK+ + V AQ + Sbjct: 69 GKELDGRVITVNEAQSR 85 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 492 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 +DE L+ F++FG + K++ D +G SRG GFV FK A+ EMN Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 49.7 bits (117), Expect = 7e-06 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 6/169 (3%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR------SKCFGFVNFESPDEAA 311 ++++KNL +TT L E F F V D + S FGF F++ ++A Sbjct: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTV 491 + + G + + + ++ K +K Q + +KNL Sbjct: 712 AVISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQG--------KIIVKNLPFEA 763 Query: 492 DDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEM 638 + + ELF+ FG + S +V + + ++RG FV F +A A+ ++ Sbjct: 764 TRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 812 Score = 47.4 bits (111), Expect = 4e-05 Identities = 27/91 (29%), Positives = 54/91 (59%), Gaps = 2/91 (2%) Frame = +3 Query: 375 QKKSEREMELKEKFEKNLQEAADKYQNTN-LYLKNLDDTVDDEKLRELFAEFGTITSCKV 551 Q+ E E+E ++ E+ +++ K + T L+L+N+ T ++ R+LF+ +G + + Sbjct: 304 QQPEETEVETSQESEE--EKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHI 361 Query: 552 MRDSN-GASRGSGFVAFKSADDASRALAEMN 641 D+ G S+G +V FK+AD+A+ A E++ Sbjct: 362 AVDTRTGQSKGFAYVLFKNADNAATAFVELD 392 Score = 45.1 bits (105), Expect = 2e-04 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 + VKNL T D+ E+F FG + SV V + D ++ F FV F P EA A+ L Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQ 813 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLY---LKNLDDTVDDE 500 G + + ++ E + EK + +++ + + N+ + +D DDE Sbjct: 814 GVHLLGRRLVMEFVEQDPEDVEQQIEKMTRKVKKQVNTTKIANMRNSGKRKIDLDEDDE 872 Score = 37.7 bits (86), Expect = 0.029 Identities = 41/205 (20%), Positives = 77/205 (37%), Gaps = 43/205 (20%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 + VKN TT +++ E+F FG + +++ G + F A A ++ Sbjct: 518 ILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSG-----TIAILQFRDVPAARAAFSKIS 572 Query: 333 GKKFSDKEWYVGRA---------------------QKKSEREMELK--EKFEKNLQEAAD 443 K+F D Y+ + QK + +E ++ + E AAD Sbjct: 573 YKRFKDGIIYLEKGPSDCFTRDAQGDELVESETDIQKATAKEAKISGADLLEAQSLPAAD 632 Query: 444 KYQN--------------TNLYLKNLDDTVDDEKLRELFAEFGTITSCKV------MRDS 563 K + ++++KNL+ + ++L E F F +V + Sbjct: 633 KDDHDDDDDDDDVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPG 692 Query: 564 NGASRGSGFVAFKSADDASRALAEM 638 S G GF FK+ + A+ ++ M Sbjct: 693 KTLSMGFGFAEFKTKEQANAVISAM 717 Score = 35.0 bits (79), Expect = 0.19 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 24/150 (16%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGT-----------ITSVVVMRDGDGRSKCFGFVNFE 293 + V VK L ED L+++ K T ++ V +M++ DG S+ F F+ F Sbjct: 2 SRVIVKGLPIYLKEDRLRDLIEKRLTQKHQSTDVQSYLSDVKLMKNRDGESRRFAFIGFR 61 Query: 294 SPDEAALAVQDLNG-------------KKFSDKEWYVGRAQKKSEREMELKEKFEKNLQE 434 ++A V NG K F+D +K+ E L+E+ E L + Sbjct: 62 DEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQPMREKRREALKRLREREELLLAD 121 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAE 524 D + + D D K ++ AE Sbjct: 122 KKDSQKK-----QKSDSNNDGGKKHDIDAE 146
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/103 (26%), Positives = 53/103 (51%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 K ++V+NLA T TE+ L++ F +FG + V ++D + F++F+ D A A+ Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAM 388 Query: 321 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 +++NGK + + A+ ++ E K + + + D Y Sbjct: 389 EEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 431 Score = 48.1 bits (113), Expect = 2e-05 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 3/172 (1%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGT-ITSVVVMRDGDGRSKCFGF--VNFESPDE 305 SV N ++V ++ ++ T++ + E F K +T V++ D + K GF + +E Sbjct: 239 SVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKT 298 Query: 306 AALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDD 485 AA A + L K K W + +E + E E K + L+++NL + Sbjct: 299 AAQARRRLMSGKV--KVW-------GNVGTVEWADPIEDPDPEVMAKVKV--LFVRNLAN 347 Query: 486 TVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 TV +E L + F++FG + K ++D F+ F D A +A+ EMN Sbjct: 348 TVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAMEEMN 392
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 49.7 bits (117), Expect = 7e-06 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 21/124 (16%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD--------------------GRS 266 +N+YVK++ + T++DL + + FG I SV V+ G G S Sbjct: 540 SNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSS 599 Query: 267 KCFGFVNFESPDEAALAVQDLNGKKFS-DKEWYVGRAQKKSEREMELKEKFEKNLQEAAD 443 + +GFV+FESP +AA A+ + +G + S D+ V AQK+ + + +++ + + Sbjct: 600 RGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKRG--NLSSSDDDDQSQTDNSS 657 Query: 444 KYQN 455 K+QN Sbjct: 658 KFQN 661 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQD 326 N++V +A++ + +L +F K+G I S+ ++ D G +GF+++ +A+L +++ Sbjct: 196 NIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKE 255 Query: 327 LNGKKFSDKEWYVGRAQKKSERE 395 LNG+ + ++ ++ ERE Sbjct: 256 LNGRTVNGSTLFINYHVERKERE 278 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 20/80 (25%) Frame = +3 Query: 450 QNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVM----------RDSN----------G 569 Q +NLY+K++ + DE L + + FG I S KV+ + SN G Sbjct: 538 QESNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVG 597 Query: 570 ASRGSGFVAFKSADDASRAL 629 +SRG GFV+F+S DA++A+ Sbjct: 598 SSRGYGFVSFESPLDAAKAI 617 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAE 635 N+++ + ++ +L LF+++G I S K++ D + G G GF+++ AS + E Sbjct: 196 NIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKE 255 Query: 636 MN 641 +N Sbjct: 256 LN 257
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 49.3 bits (116), Expect = 1e-05 Identities = 27/103 (26%), Positives = 53/103 (51%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 K ++V+NLA T TE+ L++ F +FG + V ++D + F++F+ D A A+ Sbjct: 336 KVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAM 388 Query: 321 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 +++NGK + + A+ ++ E K + + + D Y Sbjct: 389 EEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 431 Score = 47.8 bits (112), Expect = 3e-05 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 3/172 (1%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGT-ITSVVVMRDGDGRSKCFGF--VNFESPDE 305 SV N ++V ++ ++ T++ + E F K +T V++ D + K GF + +E Sbjct: 239 SVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKT 298 Query: 306 AALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDD 485 AA A + L K K W + +E + E E K + L+++NL + Sbjct: 299 AAQARRRLMSGKV--KVW-------GNVGTVEWADPIEDPDPEVMAKVKV--LFVRNLAN 347 Query: 486 TVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 TV +E L + F++FG + K ++D F+ F D A +A+ EMN Sbjct: 348 TVTEEILEKSFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAMEEMN 392
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 49.3 bits (116), Expect = 1e-05 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Frame = +3 Query: 156 YVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDLN 332 +V LA T ++ L++ F +FG IT ++ D + GRS+ FGFV F+ A++ +N Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 333 GKKFSDKEWYVGRAQKK 383 G++ + V AQ + Sbjct: 69 GQELDGRNITVNEAQSR 85 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = +3 Query: 492 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 +DE L + F++FG IT K++ D G SRG GFV FK A+ MN Sbjct: 18 NDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 49.3 bits (116), Expect = 1e-05 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = +3 Query: 156 YVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDLN 332 +V LA T + L++ F FG + V+ D + GRS+ FGFV F S A++++N Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 333 GKKFSDKEWYVGRAQKK 383 GK+ + V +AQ + Sbjct: 71 GKELDGRNITVNQAQSR 87 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 492 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 ++E L + FA FG + KV+ D G SRG GFV F S A+ MN Sbjct: 20 NNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 49.3 bits (116), Expect = 1e-05 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 18/182 (9%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 N +++ L TED +KE+ FG + + + D G SK + F + P A+ Sbjct: 282 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAG 341 Query: 327 LNGKKFSDKEWYVGRA-QKKSEREMELKEKFEK----NLQEAADKYQNTNLYLKNL---D 482 LNG + DK+ V A ++ L +L + A + L L N+ D Sbjct: 342 LNGMQLGDKQLVVQLACANQTRHNTHLPNSASAIAGIDLSQGAGRATEI-LCLMNMVTED 400 Query: 483 DTVDD-------EKLRELFAEFGTITSCKVMR---DSNGASRGSGFVAFKSADDASRALA 632 + D E +RE +++G + S ++ R D G FV F + D RA A Sbjct: 401 ELRSDEDYEEILEDVREECSKYGIVRSLEIPRPYDDHPVPGVGKVFVEFATTSDCQRAQA 460 Query: 633 EM 638 + Sbjct: 461 AL 462 Score = 38.5 bits (88), Expect = 0.017 Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 4/129 (3%) Frame = +3 Query: 267 KCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQ----KKSEREMELKEKFEKNLQE 434 K F F+ F S DE + +G F ++ V R + ++ +M + + + Sbjct: 221 KNFAFIEFRSIDETTAGMA-FDGINFMGQQLKVRRPRDYQPSQNTFDMNARMPVSSIVVD 279 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADD 614 +A+K +++ L + + +++++EL FG + + + DS G S+G F + Sbjct: 280 SANK-----IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTL 334 Query: 615 ASRALAEMN 641 +A+A +N Sbjct: 335 TDQAIAGLN 343
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 49.3 bits (116), Expect = 1e-05 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 1/127 (0%) Frame = +3 Query: 69 MNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMR 248 +NDK++ G Q N + +Y+ NL TE D+ +F ++G V++ R Sbjct: 7 INDKELQSGILSPHQSWHNEYKDNAY--IYIGNLNRELTEGDILTVFSEYGVPVDVILSR 64 Query: 249 DGD-GRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKN 425 D + G S+ F ++ +E LAV +LNG K + + + +R + +K+ + Sbjct: 65 DENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYRPKRSL---QKYYEA 121 Query: 426 LQEAADK 446 ++E D+ Sbjct: 122 VKEELDR 128 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = +3 Query: 453 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALA 632 N +Y+ NL+ + + + +F+E+G + RD N GF K D S LA Sbjct: 30 NAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDEN-TGESQGFAYLKYEDQRSTILA 88 Query: 633 EMN 641 N Sbjct: 89 VDN 91
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 49.3 bits (116), Expect = 1e-05 Identities = 27/103 (26%), Positives = 53/103 (51%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 K ++V+NLA T TE+ L++ F +FG + V ++D + F++F+ D A A+ Sbjct: 246 KVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAM 298 Query: 321 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 +++NGK + + A+ ++ E K + + + D Y Sbjct: 299 EEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 341 Score = 47.8 bits (112), Expect = 3e-05 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 3/172 (1%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGT-ITSVVVMRDGDGRSKCFGF--VNFESPDE 305 SV N ++V ++ ++ T++ + E F K +T V++ D + K GF + +E Sbjct: 149 SVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKT 208 Query: 306 AALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDD 485 AA A + L K K W + +E + E E K + L+++NL + Sbjct: 209 AAQARRRLMSGKV--KVW-------GNVGTVEWADPIEDPDPEVMAKVKV--LFVRNLAN 257 Query: 486 TVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 TV +E L + F++FG + K ++D F+ F D A +A+ EMN Sbjct: 258 TVTEEILEKSFSQFGKLERVKKLKD-------YAFIHFDERDGAVKAMEEMN 302
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 49.3 bits (116), Expect = 1e-05 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 6/157 (3%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFV---NFESPDEAALAV 320 ++V L+ TTE +L++ FGK+G I S+ V D GRS+ F F+ N E+ D+ + A Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117 Query: 321 QD-LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDD 497 + +N KK K+ K ++ +++ L + D Sbjct: 118 EHIINSKKVDPKK----------------------------AKARHGKIFVGGLTTEISD 149 Query: 498 EKLRELFAEFGTITSCKVMRDSNGASR-GSGFVAFKS 605 E+++ F +FG I ++ D + R G F+ F S Sbjct: 150 EEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS 186 Score = 38.9 bits (89), Expect = 0.013 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFG 278 + ++ D + ++V L +++++K FG+FG I V + D + K F Sbjct: 121 INSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFC 180 Query: 279 FVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREM 398 F+ F+S ++ + +K + KE V RA K E +M Sbjct: 181 FITFDS-EQVVTDLLKTPKQKIAGKEVDVKRATPKPENQM 219
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 49.3 bits (116), Expect = 1e-05 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQ 323 N ++V L TT++DL+ IF +FG I S V+RD G S C+ F+ FE ++ A Sbjct: 240 NVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFF 299 Query: 324 DLNGKKFSDKEWYVGRAQKKSEREMELK-EKFEKNLQEAADKYQN--TNLYLKNLDDTVD 494 ++ D+ +V +Q ++ + + K K+ K+ + +K Q+ NL LK+ Sbjct: 300 KMDNVLIDDRRIHVDFSQSVAKVKWKGKGGKYTKSDFKEYEKEQDKPPNLVLKDKVKPKQ 359 Query: 495 DEK 503 D K Sbjct: 360 DTK 362 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Frame = +3 Query: 318 VQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDD 497 + D G+ + E +A+K+++ + L E +L +A K L++ L+ D Sbjct: 197 IDDFKGRSAEEVEEI--KAEKEAKTQAILLEMVG-DLPDADIKPPENVLFVCKLNPVTTD 253 Query: 498 EKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 E L +F+ FG I SC+V+RD G S F+ F+ +D +A +M+ Sbjct: 254 EDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMD 302
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 49.3 bits (116), Expect = 1e-05 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEA 308 GS N +YV NL+ + L+ +F + G + V+ D D GRSK FGFV S E Sbjct: 252 GSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEV 311 Query: 309 ALAVQDLNGKKFSDKEWYVGRAQKKSER 392 A+ LNG ++ V A+ + R Sbjct: 312 QKAINSLNGADLDGRQIRVSEAEARPPR 339 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEM 638 LY+ NL VDD L LF E G + +V+ D +G S+G GFV S+ + +A+ + Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318 Query: 639 N 641 N Sbjct: 319 N 319 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG-DGRSKCFGFVNFESPDEAALAVQDL 329 ++V NL+ L ++F G + V V+ D GRS+ FGFV + E A Q Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 330 NGKKFSDKEWYVGRAQKKSERE 395 NG +F + V +RE Sbjct: 161 NGYEFEGRPLRVNAGPPPPKRE 182 Score = 38.1 bits (87), Expect = 0.022 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEM 638 L++ NL VD +L +LF G + +V+ D G SRG GFV +A + A + Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 639 N 641 N Sbjct: 161 N 161
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Frame = +3 Query: 156 YVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDLN 332 +V LA T+ + L+ F +G I V+ D + GRS+ FGFV F S + A++++N Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 333 GKKFSDKEWYVGRAQKK 383 GK+ + V +AQ + Sbjct: 71 GKELDGRNITVNQAQSR 87 Score = 38.1 bits (87), Expect = 0.022 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +3 Query: 495 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 +E L FA +G I KV+ D G SRG GFV F S + A+ MN Sbjct: 21 NESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 + V NL+E T E DL+E+F FG+I+ + + +D G+SK F F++F ++AA A+ + Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300 Query: 330 NG 335 +G Sbjct: 301 SG 302 Score = 43.1 bits (100), Expect = 7e-04 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +3 Query: 453 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRAL 629 N + + NL + + L+ELF FG+I+ + +D + G S+G F++F +DA+RA+ Sbjct: 238 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297 Query: 630 A 632 A Sbjct: 298 A 298
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDL 329 + V NL+E T E DL+E+F FG+I+ + + +D G+SK F F++F ++AA A+ + Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300 Query: 330 NG 335 +G Sbjct: 301 SG 302 Score = 43.1 bits (100), Expect = 7e-04 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +3 Query: 453 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRAL 629 N + + NL + + L+ELF FG+I+ + +D + G S+G F++F +DA+RA+ Sbjct: 238 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297 Query: 630 A 632 A Sbjct: 298 A 298
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/67 (38%), Positives = 36/67 (53%) Frame = +3 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDAS 620 D+ N L+L NLD TV + LR F FG IT + R S G + GF+ F++ D + Sbjct: 369 DQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSH 428 Query: 621 RALAEMN 641 RA M+ Sbjct: 429 RAKLAMS 435 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/62 (37%), Positives = 37/62 (59%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 +++ NL T TE DL+ F +FG IT V + R G++ +GF+ FE+ D + A ++ Sbjct: 376 LFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMS 435 Query: 333 GK 338 GK Sbjct: 436 GK 437
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 48.9 bits (115), Expect = 1e-05 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 1/159 (0%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALA 317 K +++ V L TTE DLKE F FG + V V +D G SK FGFV F E Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRF---TEYETQ 158 Query: 318 VQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDD 497 V+ ++ + D W K + Q + ++ +++ + + + Sbjct: 159 VKVMSQRHMIDGRW--------------CDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTE 204 Query: 498 EKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADD 614 ++LRE F+++G + + + R FV F ADD Sbjct: 205 DELREFFSQYGDVMDVFIPK----PFRAFAFVTF--ADD 237
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 48.5 bits (114), Expect = 2e-05 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = +3 Query: 444 KYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDAS 620 + +T L++ L DD LR+ FA FG + KV+ D G SRG GFV F A+ Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90 Query: 621 RALAEMN 641 A++EM+ Sbjct: 91 AAISEMD 97 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 329 +++ L+ T + L++ F FG + V+ D + GRS+ FGFVNF A A+ ++ Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 Query: 330 NGKKFSDKEWYVGRAQKK 383 +GK+ + + V A + Sbjct: 97 DGKELNGRHIRVNPANDR 114
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 48.5 bits (114), Expect = 2e-05 Identities = 30/74 (40%), Positives = 42/74 (56%) Frame = +3 Query: 117 RDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFES 296 RD+ P K VYV NL + +L+ FG +G + SV V R+ G F FV FE Sbjct: 3 RDSCPLDCK---VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPG----FAFVEFED 55 Query: 297 PDEAALAVQDLNGK 338 P +AA AV++L+G+ Sbjct: 56 PRDAADAVRELDGR 69
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 48.5 bits (114), Expect = 2e-05 Identities = 30/74 (40%), Positives = 42/74 (56%) Frame = +3 Query: 117 RDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFES 296 RD+ P K VYV NL + +L+ FG +G + SV V R+ G F FV FE Sbjct: 3 RDSCPLDCK---VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPG----FAFVEFED 55 Query: 297 PDEAALAVQDLNGK 338 P +AA AV++L+G+ Sbjct: 56 PRDAADAVRELDGR 69
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 N ++V +TTE +L+E F KF + V +++ DG+SK +GF+ FE+ D+A ++ Sbjct: 67 NRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAE-EIRK 125 Query: 327 LNGK--KFSDKEWYVGRAQKK 383 L K +F ++ +G A +K Sbjct: 126 LTPKQLEFRSRKLNLGPAIRK 146 Score = 35.4 bits (80), Expect = 0.14 Identities = 14/52 (26%), Positives = 30/52 (57%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDA 617 +++ + + +LRE F +F + K+++ +G S+G GF+ F++ D A Sbjct: 69 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQA 120
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Frame = +3 Query: 390 REMELKEKFEKNLQEA-----ADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVM 554 R +L +K++ +L ++ A L + NLD V D ++ELFAEFGT+ V Sbjct: 77 RPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVH 136 Query: 555 RDSNGASRGSGFVAFKSADDASRALAEMN 641 D +G S G+ V F+ DA +A+ + N Sbjct: 137 YDRSGRSLGTADVHFERKADALKAMKQYN 165 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/59 (35%), Positives = 32/59 (54%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNG 335 V NL ++ D++E+F +FGT+ V D GRS V+FE +A A++ NG Sbjct: 108 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 166
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Frame = +3 Query: 390 REMELKEKFEKNLQEA-----ADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVM 554 R +L +K++ +L ++ A L + NLD V D ++ELFAEFGT+ V Sbjct: 78 RPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVH 137 Query: 555 RDSNGASRGSGFVAFKSADDASRALAEMN 641 D +G S G+ V F+ DA +A+ + N Sbjct: 138 YDRSGRSLGTADVHFERKADALKAMKQYN 166 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/59 (35%), Positives = 32/59 (54%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNG 335 V NL ++ D++E+F +FGT+ V D GRS V+FE +A A++ NG Sbjct: 109 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 167
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/103 (27%), Positives = 53/103 (51%) Frame = +3 Query: 141 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 320 K ++V+NLA T TE+ L++ F +FG + V ++D + FV+FE A A+ Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKD-------YAFVHFEDRGAAVKAM 391 Query: 321 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKY 449 ++NGK+ +E + A+ ++ E + + + A + Y Sbjct: 392 DEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDY 434 Score = 44.7 bits (104), Expect = 2e-04 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 7/176 (3%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGT-ITSVVVMRDGDGRSKCFGF--VNFESPDE 305 SV N ++V ++ + T++++ E F K + V++ D + K GF + +E Sbjct: 242 SVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKS 301 Query: 306 AALAVQDLNGKKFSDKEW----YVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLK 473 AA A + L K K W V A E + E+ K + L+++ Sbjct: 302 AAQARRRLMSGKV--KVWGNVVTVEWADPVEEPDPEVMAKVKV-------------LFVR 346 Query: 474 NLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 NL TV +E L + F+EFG + K ++D FV F+ A +A+ EMN Sbjct: 347 NLATTVTEEILEKSFSEFGKLERVKKLKD-------YAFVHFEDRGAAVKAMDEMN 395
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 48.1 bits (113), Expect = 2e-05 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSV-VVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 N +V L+ TT DLK +F K+G + VV ++C+GFV + +EA + Sbjct: 407 NFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINH 466 Query: 327 LNGKKFSDKEWYVGRAQKKS-EREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEK 503 L+ + K V +A+ + ++ K + +++++ ++TNL + D DD K Sbjct: 467 LHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAK 526
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 47.8 bits (112), Expect = 3e-05 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 8/171 (4%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 V++ L E D++ F +G I + + R FGFV FE P +A AV +L+ Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-------FGFVEFEDPRDADDAVYELD 58 Query: 333 GKKFSDKEWYVGRAQKKS-------EREMELKEKFEKNLQEAADKYQNTN-LYLKNLDDT 488 GK+ + + A+ +S + +N + A + N L ++NL Sbjct: 59 GKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSR 118 Query: 489 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 V + L++ + G +T D++ G V F S D A+ +++ Sbjct: 119 VSWQDLKDFMRQAGEVT----FADAHRPKLNEGVVEFASYGDLKNAIEKLS 165 Score = 33.5 bits (75), Expect = 0.55 Identities = 23/95 (24%), Positives = 43/95 (45%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 + +R N+P N + V+NL+ + DLK+ + G +T D G V Sbjct: 95 RNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVT----FADAHRPKLNEGVVE 150 Query: 288 FESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSER 392 F S + A++ L+GK+ + ++ + K+ R Sbjct: 151 FASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSR 185
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 47.8 bits (112), Expect = 3e-05 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 8/171 (4%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 V++ L E D++ F +G I + + R FGFV FE P +A AV +L+ Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-------FGFVEFEDPRDADDAVYELD 58 Query: 333 GKKFSDKEWYVGRAQKKS-------EREMELKEKFEKNLQEAADKYQNTN-LYLKNLDDT 488 GK+ + + A+ +S + +N + A + N L ++NL Sbjct: 59 GKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSR 118 Query: 489 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 V + L++ + G +T D++ G V F S D A+ +++ Sbjct: 119 VSWQDLKDFMRQAGEVT----FADAHRPKLNEGVVEFASYGDLKNAIEKLS 165 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/83 (25%), Positives = 39/83 (46%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVN 287 + +R N+P N + V+NL+ + DLK+ + G +T D G V Sbjct: 95 RNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVT----FADAHRPKLNEGVVE 150 Query: 288 FESPDEAALAVQDLNGKKFSDKE 356 F S + A++ L+GK+ + ++ Sbjct: 151 FASYGDLKNAIEKLSGKEINGRK 173
>YFK2_YEAST (P43607) Hypothetical 31.9 kDa protein in RPL2A-RPL29 intergenic| region Length = 289 Score = 47.4 bits (111), Expect = 4e-05 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%) Frame = +3 Query: 126 SPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVV---------MRDGDGRSKCFG 278 S + VY+ NL T +E DL +G +SV++ R K G Sbjct: 11 SDTTTTITTVYISNLPFTASERDLHAFLNNYGA-SSVLIPTQTVRRFSKRHNSNPRKPLG 69 Query: 279 --FVNFESPDEAALAVQDLNGKKFSDKEWYVGRA---QKKSEREMELKEKFEKNLQEAAD 443 F F + A A+QDLNG F +++ ++ + S + ++K+ EKN + Sbjct: 70 IAFAQFANNTLALKAIQDLNGTVFQNQKLFLKLHVPYEADSTPDTDVKKPKEKNKVKKTP 129 Query: 444 KYQNTNLYLKNLDDTVDDEKLRELF 518 + +Y +L D + D ++RELF Sbjct: 130 ETAADTVYCHDLPDDITDSEIRELF 154
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 47.4 bits (111), Expect = 4e-05 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC-FGFVNFESPDEAA 311 S+K + +YV NL+ T+E+ + E+F K GTI +++ D + C F F+ + PDEA Sbjct: 42 SMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEAL 101 Query: 312 LAVQDLNGKKFSDK 353 A++ L+ K +K Sbjct: 102 NALKYLSDTKLDEK 115 Score = 32.0 bits (71), Expect = 1.6 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +3 Query: 426 LQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFK 602 LQE + +++ +Y+ NL +E++ ELF++ GTI + D G F+ + Sbjct: 36 LQELRESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYS 95 Query: 603 SADDASRAL 629 D+A AL Sbjct: 96 CPDEALNAL 104
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 47.0 bits (110), Expect = 5e-05 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 9/172 (5%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 V++ L E D++ F +G I + + R FGFV FE P +A AV +L+ Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-------FGFVEFEDPRDADDAVYELD 58 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEA--------ADKYQNTN-LYLKNLDD 485 GK+ + + A+ +S R + ++ L A +N N L ++NL Sbjct: 59 GKELCSERVTIEHARARS-RGGRGRGRYSDRLAVADLGNDRRKCSTCKNRNRLIVENLSS 117 Query: 486 TVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 V + L++ + G +T D++ G V F S D A+ +++ Sbjct: 118 RVSWQDLKDFMRQAGEVT----FADAHRPKLNEGVVEFASYGDLKNAIEKLS 165
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 46.6 bits (109), Expect = 6e-05 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 +++V+N+A+ T +DL+ FG++G I V V D R + F +V FE +A A+ + Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 L+ K ++ + AQ + ++K K +N+ ++ +Y + + Y ++ + + + Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVY-SSSRYDDYDRYRRSRSRSYERRRS 129 Query: 507 R 509 R Sbjct: 130 R 130
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 46.6 bits (109), Expect = 6e-05 Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 +++V+N+A+ T +DL+ FG++G I V V D R + F +V FE +A A+ + Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 327 LNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKL 506 L+ K ++ + AQ + ++K K +N+ ++ +Y + + Y ++ + + + Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVY-SSSRYDDYDRYRRSRSRSYERRRS 129 Query: 507 R 509 R Sbjct: 130 R 130
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 13/102 (12%) Frame = +3 Query: 69 MNDKKVYVGPFVR------------KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFG 212 + +K Y+ P +R K+ERD+S + V NL++ T E++L+++F Sbjct: 170 LGEKGRYIAPHLRAGSGRESGDSMFKRERDDSA------TLRVTNLSDDTREEELRDLFR 223 Query: 213 KFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDLNG 335 +FG I V + +D + GR+K F FV++ D A A L+G Sbjct: 224 RFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265 Score = 37.0 bits (84), Expect = 0.049 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = +3 Query: 441 DKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDA 617 ++ + L + NL D +E+LR+LF FG I + +D G ++G FV++ D A Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCA 256 Query: 618 SRA 626 +A Sbjct: 257 IKA 259
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/73 (32%), Positives = 36/73 (49%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 + V+V NL LKE+F G + ++ D DG+S+ G V FE EA A+ Sbjct: 202 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISM 261 Query: 327 LNGKKFSDKEWYV 365 NG+ D+ +V Sbjct: 262 FNGQLLFDRPMHV 274 Score = 46.2 bits (108), Expect = 8e-05 Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 33/195 (16%) Frame = +3 Query: 156 YVKNLAETTTEDDLKEIFG-KFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++ N+ LK++ K G +T V ++ D +G+S+ V F+ + A + LN Sbjct: 72 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 131 Query: 333 -----GKKFSDKEWYVGRAQKKSEREM---------------------------ELKEKF 416 G+ KE G +++ +++ + + Sbjct: 132 KHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEI 191 Query: 417 EKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVA 596 LQ + +++ NLD V +KL+E+F+ G + ++ D +G SRG G V Sbjct: 192 IHALQAGR---LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVT 248 Query: 597 FKSADDASRALAEMN 641 F+ + +A +A++ N Sbjct: 249 FEQSIEAVQAISMFN 263 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = +3 Query: 123 NSPGSV-KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESP 299 ++PG K ++V+NL T LK+ F + G + + + +G+SK G V FESP Sbjct: 642 HAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESP 700 Query: 300 DEAALAVQDLNGKKFSDKE 356 + A A + +NG K S +E Sbjct: 701 EVAERACRMMNGMKLSGRE 719 Score = 32.7 bits (73), Expect = 0.93 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ++++NL + L++ F E G + + + NG S+G G V F+S + A RA MN Sbjct: 653 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 711
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/70 (32%), Positives = 40/70 (57%) Frame = +3 Query: 135 SVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAAL 314 +++ N ++V+NL ++++L E+F FGTI V ++ + + K +V FE P EA Sbjct: 720 NMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQR 779 Query: 315 AVQDLNGKKF 344 AV +G F Sbjct: 780 AVAGRDGCLF 789 Score = 42.0 bits (97), Expect = 0.002 Identities = 19/57 (33%), Positives = 33/57 (57%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALA 632 ++++NL E+L ELF+ FGTI +++ N +G +V F+ +A RA+A Sbjct: 726 IFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVA 782
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 46.2 bits (108), Expect = 8e-05 Identities = 42/170 (24%), Positives = 72/170 (42%) Frame = +3 Query: 132 GSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAA 311 G + ++V+ E +L EIFG FG + V ++ F FV FE + AA Sbjct: 120 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNG-------FAFVEFEEAESAA 172 Query: 312 LAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTV 491 A+++++GK F+++ V ++ ++R KNL E ++L D Sbjct: 173 KAIEEVHGKSFANQPLEVVYSKLPAKRYRITM----KNLPEGCS--------WQDLKDLA 220 Query: 492 DDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 + L F+ T RD + G+G + F S + AL +N Sbjct: 221 RENSLETTFSSVNT-------RDFD----GTGALEFPSEEILVEALERLN 259
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSV--VVMRDGDGRSKCFGF 281 ++ER S K V++ L T+D + EIF +G I + V R SK + + Sbjct: 148 EKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAY 207 Query: 282 VNFESPDEAALAVQDLNGKKFSDKE 356 V FE+PDEA A++ ++G + +E Sbjct: 208 VEFENPDEAEKALKHMDGGQIDGQE 232 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Frame = +3 Query: 375 QKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTIT--SCK 548 +++S + + ++ EK + + + T +++ L V + + E+F+ +G I Sbjct: 134 RRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMP 193 Query: 549 VMRDSNGASRGSGFVAFKSADDASRALAEMN 641 V R S+G +V F++ D+A +AL M+ Sbjct: 194 VERMHPHLSKGYAYVEFENPDEAEKALKHMD 224
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSV--VVMRDGDGRSKCFGF 281 ++ER S K V++ L T+D + EIF +G I + V R SK + + Sbjct: 148 EKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAY 207 Query: 282 VNFESPDEAALAVQDLNGKKFSDKE 356 V FE+PDEA A++ ++G + +E Sbjct: 208 VEFENPDEAEKALKHMDGGQIDGQE 232 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Frame = +3 Query: 375 QKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTIT--SCK 548 +++S + + ++ EK + + + T +++ L V + + E+F+ +G I Sbjct: 134 RRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMP 193 Query: 549 VMRDSNGASRGSGFVAFKSADDASRALAEMN 641 V R S+G +V F++ D+A +AL M+ Sbjct: 194 VERMHPHLSKGYAYVEFENPDEAEKALKHMD 224
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSV--VVMRDGDGRSKCFGF 281 ++ER S K V++ L T+D + EIF +G I + V R SK + + Sbjct: 148 EKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAY 207 Query: 282 VNFESPDEAALAVQDLNGKKFSDKE 356 V FE+PDEA A++ ++G + +E Sbjct: 208 VEFENPDEAEKALKHMDGGQIDGQE 232 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Frame = +3 Query: 375 QKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTIT--SCK 548 +++S + + ++ EK + + + T +++ L V + + E+F+ +G I Sbjct: 134 RRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMP 193 Query: 549 VMRDSNGASRGSGFVAFKSADDASRALAEMN 641 V R S+G +V F++ D+A +AL M+ Sbjct: 194 VERMHPHLSKGYAYVEFENPDEAEKALKHMD 224
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSV--VVMRDGDGRSKCFGF 281 ++ER S K V++ L T+D + EIF +G I + V R SK + + Sbjct: 148 EKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAY 207 Query: 282 VNFESPDEAALAVQDLNGKKFSDKE 356 V FE+PDEA A++ ++G + +E Sbjct: 208 VEFENPDEAEKALKHMDGGQIDGQE 232 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Frame = +3 Query: 375 QKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTIT--SCK 548 +++S + + ++ EK + + + T +++ L V + + E+F+ +G I Sbjct: 134 RRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMP 193 Query: 549 VMRDSNGASRGSGFVAFKSADDASRALAEMN 641 V R S+G +V F++ D+A +AL M+ Sbjct: 194 VERMHPHLSKGYAYVEFENPDEAEKALKHMD 224
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = +3 Query: 108 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSV--VVMRDGDGRSKCFGF 281 ++ER S K V++ L T+D + EIF +G I + V R SK + + Sbjct: 148 EKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAY 207 Query: 282 VNFESPDEAALAVQDLNGKKFSDKE 356 V FE+PDEA A++ ++G + +E Sbjct: 208 VEFENPDEAEKALKHMDGGQIDGQE 232 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Frame = +3 Query: 375 QKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTIT--SCK 548 +++S + + ++ EK + + + T +++ L V + + E+F+ +G I Sbjct: 134 RRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMP 193 Query: 549 VMRDSNGASRGSGFVAFKSADDASRALAEMN 641 V R S+G +V F++ D+A +AL M+ Sbjct: 194 VERMHPHLSKGYAYVEFENPDEAEKALKHMD 224
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 45.8 bits (107), Expect = 1e-04 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 13/102 (12%) Frame = +3 Query: 87 YVGPFVRKQERDNSPGSVKFNN------------VYVKNLAETTTEDDLKEIFGKFGTIT 230 Y + R++ R +SP S + + + V L+ TTE DL+E+F ++G ++ Sbjct: 87 YTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLS 146 Query: 231 SVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDK 353 V V+ D GRS+ F FV FE D++ A++ NG + + Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGR 188 Score = 39.3 bits (90), Expect = 0.010 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Frame = +3 Query: 360 YVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTIT 539 Y +++ R ++ A+ NT L + L + LRE+F+ +G ++ Sbjct: 87 YTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLS 146 Query: 540 SCKVMRDSN-GASRGSGFVAFKSADDASRALAEMN 641 V+ D G SRG FV F+ DD+ A+ N Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERAN 181
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 45.8 bits (107), Expect = 1e-04 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 13/102 (12%) Frame = +3 Query: 87 YVGPFVRKQERDNSPGSVKFNN------------VYVKNLAETTTEDDLKEIFGKFGTIT 230 Y + R++ R +SP S + + + V L+ TTE DL+E+F ++G ++ Sbjct: 85 YTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLS 144 Query: 231 SVVVMRD-GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDK 353 V V+ D GRS+ F FV FE D++ A++ NG + + Sbjct: 145 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGR 186 Score = 39.3 bits (90), Expect = 0.010 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Frame = +3 Query: 360 YVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTIT 539 Y +++ R ++ A+ NT L + L + LRE+F+ +G ++ Sbjct: 85 YTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLS 144 Query: 540 SCKVMRDSN-GASRGSGFVAFKSADDASRALAEMN 641 V+ D G SRG FV F+ DD+ A+ N Sbjct: 145 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERAN 179
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDLNG 335 V L+ TTE DL+E+F K+G I V ++ D RS+ F FV FE+ D+A A + NG Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 336 KKFSDK 353 + + Sbjct: 182 MELDGR 187 Score = 35.8 bits (81), Expect = 0.11 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 495 DEKLRELFAEFGTITSCKVMRDSNGA-SRGSGFVAFKSADDASRALAEMN 641 + LRE+F+++G I ++ D SRG FV F++ DDA A N Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 180
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDLNG 335 V L+ TTE DL+E+F K+G I V ++ D RS+ F FV FE+ D+A A + NG Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 336 KKFSDK 353 + + Sbjct: 182 MELDGR 187 Score = 35.8 bits (81), Expect = 0.11 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 495 DEKLRELFAEFGTITSCKVMRDSNGA-SRGSGFVAFKSADDASRALAEMN 641 + LRE+F+++G I ++ D SRG FV F++ DDA A N Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 180
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDG-RSKCFGFVNFESPDEAALAVQDLNG 335 V L+ TTE DL+E+F K+G I V ++ D RS+ F FV FE+ D+A A + NG Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 336 KKFSDK 353 + + Sbjct: 182 MELDGR 187 Score = 35.8 bits (81), Expect = 0.11 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 495 DEKLRELFAEFGTITSCKVMRDSNGA-SRGSGFVAFKSADDASRALAEMN 641 + LRE+F+++G I ++ D SRG FV F++ DDA A N Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 180
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Frame = +3 Query: 156 YVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDLN 332 +V LA T + +L+ F +FG + ++ D + GRS+ FGFV F+ A+ ++N Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 333 GKKFSDKEWYVGRAQKK 383 GK+ + V AQ + Sbjct: 69 GKELDGRTITVNEAQSR 85 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 495 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMN 641 D +L F++FG + K++ D G SRG GFV FK A+ EMN Sbjct: 19 DAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/73 (32%), Positives = 36/73 (49%) Frame = +3 Query: 147 NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQD 326 + V+V NL LKE+F G + ++ D DG+S+ G V FE EA A+ Sbjct: 203 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 262 Query: 327 LNGKKFSDKEWYV 365 NG+ D+ +V Sbjct: 263 FNGQLLFDRPMHV 275 Score = 45.4 bits (106), Expect = 1e-04 Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 33/195 (16%) Frame = +3 Query: 156 YVKNLAETTTEDDLKEIFG-KFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++ N+ LK++ K G +T V ++ D +G+S+ V F+ + A + LN Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 132 Query: 333 -----GKKFSDKEWYVGRAQKKSEREM---------------------------ELKEKF 416 G+ KE G +++ +++ + + Sbjct: 133 KHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEI 192 Query: 417 EKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVA 596 LQ + +++ NLD V +KL+E+F+ G + ++ D +G SRG G V Sbjct: 193 IHALQAGR---LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVT 249 Query: 597 FKSADDASRALAEMN 641 F+ + +A +A++ N Sbjct: 250 FEQSIEAVQAISMFN 264 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = +3 Query: 123 NSPGSV-KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESP 299 ++PG K ++V+NL T LK+ F + G + + + +G+SK G V FESP Sbjct: 643 HAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESP 701 Query: 300 DEAALAVQDLNGKKFSDKE 356 + A A + +NG K S +E Sbjct: 702 EVAERACRMMNGMKLSGRE 720 Score = 32.7 bits (73), Expect = 0.93 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 ++++NL + L++ F E G + + + NG S+G G V F+S + A RA MN Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 712
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/85 (31%), Positives = 44/85 (51%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGF 281 V + + S G ++V N+ + DLK +F KFG ++ V ++ + G SK FGF Sbjct: 138 VTQPDPSTSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG-SKGFGF 196 Query: 282 VNFESPDEAALAVQDLNGKKFSDKE 356 V E P +A A Q+L+G ++ Sbjct: 197 VTMERPQDAERARQELHGSMIEGRK 221 Score = 37.4 bits (85), Expect = 0.038 Identities = 18/60 (30%), Positives = 34/60 (56%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMN 641 L++ N+ D L+ +F +FG ++ +++ + G S+G GFV + DA RA E++ Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG-SKGFGFVTMERPQDAERARQELH 213
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGF 281 RK++ +PG V YV++L E + F +FGT+T + R G SK + F Sbjct: 36 RKKQEQLTPGVV-----YVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAF 90 Query: 282 VNFESPDEAALAVQDLNGKKFSDK 353 V FES D A + + +N F ++ Sbjct: 91 VEFESEDVAKIVAETMNNYLFGER 114 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSADDASRALAEM 638 +Y+++L + +D+ ++ F++FGT+T ++ R G S+G FV F+S D A M Sbjct: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106 Query: 639 N 641 N Sbjct: 107 N 107
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC-FGFVNFESPDEAALAVQDL 329 +YV NL+ T+E+ L E+F K G+I +++ D + C F F+ +++P EA A++ L Sbjct: 48 IYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQEALAALKYL 107 Query: 330 NGKKFSDKE 356 + K D+E Sbjct: 108 SKTKLDDRE 116
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 2/135 (1%) Frame = +3 Query: 105 RKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGR-SKCFGF 281 ++ R+ S N +V L+ TT DLK +F ++G + V+ + ++C+GF Sbjct: 414 KRLSREEKGRSSCGRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGF 473 Query: 282 VNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKK-SEREMELKEKFEKNLQEAADKYQNT 458 V + +EA + L+ + K V +A+ + + + + + + ++ + ++ Sbjct: 474 VTMSTAEEATKCINHLHKTELHGKMISVEKAKSEPAGKRVPDRRDGDSKKEKTSTSDRSA 533 Query: 459 NLYLKNLDDTVDDEK 503 NL + D DD K Sbjct: 534 NLKREEKGDRKDDAK 548
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 45.1 bits (105), Expect = 2e-04 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 1/153 (0%) Frame = +3 Query: 102 VRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGF 281 + K E S G +K N+ V+++ +T+ +D L F KFG +TSV + + R +G Sbjct: 327 LEKDEPRKSFG-IKVQNLPVRSI-DTSLKDGLFHEFKKFGKVTSVQIHGASEER---YGL 381 Query: 282 VNFESPDEAALAVQDLNGKKFSDKEWYV-GRAQKKSEREMELKEKFEKNLQEAADKYQNT 458 V F ++ A+ GK F + V ++E E E + ++ + E K T Sbjct: 382 VFFRQQEDQEKALTASKGKLFFGMQIEVTAWVGPETESENEFR-PLDERIDEFHPKATRT 440 Query: 459 NLYLKNLDDTVDDEKLRELFAEFGTITSCKVMR 557 L++ NL+ T LR +F FG I + + Sbjct: 441 -LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKK 472 Score = 38.5 bits (88), Expect = 0.017 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 1/162 (0%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 +++ NL +TTT DL+ IF +FG I + + + + F+ + A++ ++ Sbjct: 441 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQ--YAFLQYCDIASVCKAIKKMD 498 Query: 333 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTN-LYLKNLDDTVDDEKLR 509 G+ Y+G + LK F K++ TN ++L L V D+ L Sbjct: 499 GE-------YLGNNR--------LKLGFGKSMP--------TNCVWLDGLSSNVSDQYLT 535 Query: 510 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 F +G + KV+ D +G V + +DA A+ E Sbjct: 536 RHFCRYGPVV--KVVFD---RLKGMALVLYSEIEDAQAAVKE 572
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 45.1 bits (105), Expect = 2e-04 Identities = 28/88 (31%), Positives = 46/88 (52%) Frame = +3 Query: 111 QERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNF 290 Q +NS ++V N+ + DL+++FG+FG I V ++ + G SK FGFV F Sbjct: 109 QSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTF 167 Query: 291 ESPDEAALAVQDLNGKKFSDKEWYVGRA 374 E+ +A A + L+G ++ V A Sbjct: 168 ENSADADRAREKLHGTVVEGRKIEVNNA 195 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/71 (29%), Positives = 40/71 (56%) Frame = +3 Query: 429 QEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSA 608 + + K L++ N+ D LR++F +FG I +++ + G S+G GFV F+++ Sbjct: 112 ENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENS 170 Query: 609 DDASRALAEMN 641 DA RA +++ Sbjct: 171 ADADRAREKLH 181
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 3/91 (3%) Frame = +3 Query: 150 NVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRD-GDGRSKCFGFVNFESPDEAALAVQD 326 +++++N+A+ T +DL+ FG++G I V + D R + F +V FE +A A+ + Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70 Query: 327 LNGKKFSDKEWYVGRAQ--KKSEREMELKEK 413 LN K ++ + AQ +K+ +M+ KE+ Sbjct: 71 LNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/58 (41%), Positives = 34/58 (58%) Frame = +3 Query: 462 LYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAE 635 L + NLD V D ++ELFAEFGT+ V D +G S G+ V F+ DA +A+ + Sbjct: 77 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 134 Score = 36.2 bits (82), Expect = 0.084 Identities = 20/59 (33%), Positives = 31/59 (52%) Frame = +3 Query: 159 VKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNG 335 V NL ++ D++E+F +FGT+ V D GRS V+FE +A A++ G Sbjct: 79 VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG 137
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/63 (38%), Positives = 35/63 (55%) Frame = +3 Query: 153 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 332 ++V NL TE+ L E+F + G + V + +D DG+ K F FVNF+ A+ LN Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71 Query: 333 GKK 341 G K Sbjct: 72 GIK 74 Score = 36.6 bits (83), Expect = 0.065 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +3 Query: 435 AADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADD 614 AA + L++ NL+ V +E L ELF + G + K+ +D +G + FV FK Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62 Query: 615 ASRALAEMN 641 A+ +N Sbjct: 63 VPYAMNLLN 71 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,340,505 Number of Sequences: 219361 Number of extensions: 1214433 Number of successful extensions: 7363 Number of sequences better than 10.0: 425 Number of HSP's better than 10.0 without gapping: 6162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6866 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
