Clone Information

BLAST Search Result

Clone Name	bags12e02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_465260.1\| Oryza sativa (japonica cultivar-group), mRNA	321	1e-84
2	gb\|AY104587.1\| Zea mays PCO104634 mRNA sequence	285	7e-74
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	224	2e-55
4	dbj\|AP004024.3\| Oryza sativa (japonica cultivar-group) genomic D...	224	2e-55
5	dbj\|AP004798.2\| Oryza sativa (japonica cultivar-group) genomic D...	224	2e-55
6	ref\|NM_124867.2\| Arabidopsis thaliana unknown protein AT5G54855 ...	86	1e-13
7	gb\|AY093718.1\| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, comp...	86	1e-13
8	gb\|AF410270.1\|AF410270 Arabidopsis thaliana unknown protein mRNA...	86	1e-13
9	dbj\|AK118946.1\| Arabidopsis thaliana At5g54855 mRNA for unknown ...	86	1e-13
10	dbj\|AB005232.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	82	2e-12
11	gb\|AY088675.1\| Arabidopsis thaliana clone 9159 mRNA, complete se...	78	3e-11
12	emb\|BX830033.1\|CNS0A053 Arabidopsis thaliana Full-length cDNA Co...	52	0.002
13	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	46	0.11
14	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.11
15	gb\|AC134230.2\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.11
16	gb\|AY364845.1\| Virus PhiCh1 pBgB51 capsid protein, int1, and cap...	42	1.7
17	gb\|AY364843.1\| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-...	42	1.7
18	gb\|AF440695.1\| Virus PhiCh1, complete genome	42	1.7
19	ref\|XM_959884.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.9
20	ref\|XM_330553.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.9
21	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	40	6.9
22	emb\|AL109838.11\|HSDJ796I8 Human DNA sequence from clone RP4-796I...	40	6.9
23	emb\|X75952.1\|SGHRDBSPR S.griseus hrdB and sprC genes for sigma f...	40	6.9
24	emb\|AL939125.1\|SCO939125 Streptomyces coelicolor A3(2) complete ...	40	6.9
25	emb\|AJ003022.1\|SCA32WHIH Streptomyces coelicolor whiH gene	40	6.9
26	gb\|AE012056.1\| Xanthomonas axonopodis pv. citri str. 306, secti...	40	6.9
27	gb\|AE012520.1\| Xanthomonas campestris pv. campestris str. ATCC 3...	40	6.9
28	gb\|AC135209.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.9
29	gb\|CP000050.1\| Xanthomonas campestris pv. campestris str. 8004, ...	40	6.9
30	gb\|AC120182.8\| Mus musculus chromosome 1, clone RP24-501C2, comp...	40	6.9
31	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	6.9
32	gb\|AC008572.6\|AC008572 Homo sapiens chromosome 5 clone CTC-551A1...	40	6.9
33	gb\|AC093475.9\| Mus musculus chromosome 1, clone RP23-54K22, comp...	40	6.9
34	gb\|AY106131.1\| Zea mays PCO096827 mRNA sequence	40	6.9

>ref|XM_465260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 468

 Score =  321 bits (162), Expect = 1e-84
 Identities = 307/354 (86%), Gaps = 1/354 (0%)
 Strand = Plus / Plus

                                                                       
Query: 93  gccgaagcgtggnacgggggagatccgcggccgcgtcgtctgcgacgtctgcgccgactc 152
           ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||  ||| |
Sbjct: 94  gccgaggcgtgg-acgggggagatccgcggccacgtcgtctgcgacgtctgcggggacgc 152

                                                                       
Query: 153 tgccatcgggcccgaggaccacgccctcgaaggcgctgaggttgctgttctgtgcattac 212
            |||||||| ||||||||||||| ||||||||| || |||||||| || || ||||| ||
Sbjct: 153 cgccatcggccccgaggaccacgtcctcgaaggtgccgaggttgccgtcctctgcatcac 212

                                                                       
Query: 213 gaaatctggtgaggtcatcaactaccaggcattcacaaactacgagggcatctacagtgt 272
           || ||||||||| || |||||||||||||| |||||||||| | ||||  |||||| |||
Sbjct: 213 gagatctggtgaagttatcaactaccaggccttcacaaactccaagggtgtctacattgt 272

                                                                       
Query: 273 tgcggagacgatgccggagagcgaccggtgggactcgtgcctggcgaggcccatcagcag 332
           ||||||||||||||| ||||| ||||| ||||| || ||| |||| ||||||||||||||
Sbjct: 273 tgcggagacgatgccagagagtgaccgttgggagtcatgcttggcaaggcccatcagcag 332

                                                                       
Query: 333 cttccaccagcattgcacgaggaggggcgatgcacactctggggtcaagttcacatacaa 392
           ||| |||||||||||||| | |||||| ||| ||||||||||||||||||||||||||| 
Sbjct: 333 ctttcaccagcattgcactaagaggggtgatacacactctggggtcaagttcacatacag 392

                                                                 
Query: 393 caaacactcagggaactcgcacagcgttaaggcattcctgtacaagcctgccaa 446
           ||| |  ||||| ||||| |||| ||| ||| | ||||| ||||||||||||||
Sbjct: 393 caagccttcaggaaactctcacaccgtcaagacgttcctctacaagcctgccaa 446

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>gb|AY104587.1| Zea mays PCO104634 mRNA sequence
          Length = 903

 Score =  285 bits (144), Expect = 7e-74
 Identities = 291/340 (85%)
 Strand = Plus / Plus

                                                                       
Query: 106 acgggggagatccgcggccgcgtcgtctgcgacgtctgcgccgactctgccatcgggccc 165
           |||||||||||||||||||||||||||||||||||||||| |||| | |||||||| || 
Sbjct: 260 acgggggagatccgcggccgcgtcgtctgcgacgtctgcggcgacgcagccatcggcccg 319

                                                                       
Query: 166 gaggaccacgccctcgaaggcgctgaggttgctgttctgtgcattacgaaatctggtgag 225
           |||||||||||||||||||| || ||||||||||| || ||||| || ||||||||||||
Sbjct: 320 gaggaccacgccctcgaaggtgcggaggttgctgtcctctgcatcacaaaatctggtgag 379

                                                                       
Query: 226 gtcatcaactaccaggcattcacaaactacgagggcatctacagtgttgcggagacgatg 285
           || |||||||| || || |||||||||| | ||||| | || | ||| || ||||| |||
Sbjct: 380 gttatcaactatcaagccttcacaaactccaagggcgtgtatactgtcgccgagactatg 439

                                                                       
Query: 286 ccggagagcgaccggtgggactcgtgcctggcgaggcccatcagcagcttccaccagcat 345
           |||||||||||| |||||||||||||| |||||||||| || ||||||||||| |  |||
Sbjct: 440 ccggagagcgacaggtgggactcgtgcttggcgaggcctatgagcagcttccatctacat 499

                                                                       
Query: 346 tgcacgaggaggggcgatgcacactctggggtcaagttcacatacaacaaacactcaggg 405
           |||||  || |||| ||||| ||||||||||| |||||||| |||||||||   || |||
Sbjct: 500 tgcacacggcggggtgatgctcactctggggtgaagttcacttacaacaaatcgtctggg 559

                                                   
Query: 406 aactcgcacagcgttaaggcattcctgtacaagcctgcca 445
           ||| |||||| ||| ||| | ||||| |||||||| ||||
Sbjct: 560 aacccgcacaccgtcaagcctttcctctacaagccggcca 599

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  224 bits (113), Expect = 2e-55
 Identities = 221/257 (85%)
 Strand = Plus / Minus

                                                                            
Query: 190      gaggttgctgttctgtgcattacgaaatctggtgaggtcatcaactaccaggcattcaca 249
                |||||||| || || ||||| |||| ||||||||| || |||||||||||||| ||||||
Sbjct: 12629680 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 12629621

                                                                            
Query: 250      aactacgagggcatctacagtgttgcggagacgatgccggagagcgaccggtgggactcg 309
                |||| | ||||  |||||| |||||||||||||||||| ||||| ||||| ||||| || 
Sbjct: 12629620 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 12629561

                                                                            
Query: 310      tgcctggcgaggcccatcagcagcttccaccagcattgcacgaggaggggcgatgcacac 369
                ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||
Sbjct: 12629560 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 12629501

                                                                            
Query: 370      tctggggtcaagttcacatacaacaaacactcagggaactcgcacagcgttaaggcattc 429
                |||||||||||||||||||||| ||| |  ||||| ||||| |||| ||| ||| | |||
Sbjct: 12629500 tctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaagacgttc 12629441

                                 
Query: 430      ctgtacaagcctgccaa 446
                || ||||||||||||||
Sbjct: 12629440 ctctacaagcctgccaa 12629424



 Score =  105 bits (53), Expect = 1e-19
 Identities = 84/93 (90%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                            
Query: 93       gccgaagcgtggnacgggggagatccgcggccgcgtcgtctgcgacgtctgcgccgactc 152
                ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||  ||| |
Sbjct: 12632437 gccgaggcgtgg-acgggggagatccgcggccacgtcgtctgcgacgtctgcggggacgc 12632379

                                                 
Query: 153      tgccatcgggcccgaggaccacgccctcgaagg 185
                 |||||||| ||||||||||||| |||||||||
Sbjct: 12632378 cgccatcggccccgaggaccacgtcctcgaagg 12632346

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>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_B09
          Length = 105247

 Score =  224 bits (113), Expect = 2e-55
 Identities = 221/257 (85%)
 Strand = Plus / Minus

                                                                         
Query: 190   gaggttgctgttctgtgcattacgaaatctggtgaggtcatcaactaccaggcattcaca 249
             |||||||| || || ||||| |||| ||||||||| || |||||||||||||| ||||||
Sbjct: 26739 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 26680

                                                                         
Query: 250   aactacgagggcatctacagtgttgcggagacgatgccggagagcgaccggtgggactcg 309
             |||| | ||||  |||||| |||||||||||||||||| ||||| ||||| ||||| || 
Sbjct: 26679 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 26620

                                                                         
Query: 310   tgcctggcgaggcccatcagcagcttccaccagcattgcacgaggaggggcgatgcacac 369
             ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||
Sbjct: 26619 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 26560

                                                                         
Query: 370   tctggggtcaagttcacatacaacaaacactcagggaactcgcacagcgttaaggcattc 429
             |||||||||||||||||||||| ||| |  ||||| ||||| |||| ||| ||| | |||
Sbjct: 26559 tctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaagacgttc 26500

                              
Query: 430   ctgtacaagcctgccaa 446
             || ||||||||||||||
Sbjct: 26499 ctctacaagcctgccaa 26483



 Score =  105 bits (53), Expect = 1e-19
 Identities = 84/93 (90%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                         
Query: 93    gccgaagcgtggnacgggggagatccgcggccgcgtcgtctgcgacgtctgcgccgactc 152
             ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||  ||| |
Sbjct: 29496 gccgaggcgtgg-acgggggagatccgcggccacgtcgtctgcgacgtctgcggggacgc 29438

                                              
Query: 153   tgccatcgggcccgaggaccacgccctcgaagg 185
              |||||||| ||||||||||||| |||||||||
Sbjct: 29437 cgccatcggccccgaggaccacgtcctcgaagg 29405

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>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0572D06
          Length = 148920

 Score =  224 bits (113), Expect = 2e-55
 Identities = 221/257 (85%)
 Strand = Plus / Minus

                                                                          
Query: 190    gaggttgctgttctgtgcattacgaaatctggtgaggtcatcaactaccaggcattcaca 249
              |||||||| || || ||||| |||| ||||||||| || |||||||||||||| ||||||
Sbjct: 134213 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 134154

                                                                          
Query: 250    aactacgagggcatctacagtgttgcggagacgatgccggagagcgaccggtgggactcg 309
              |||| | ||||  |||||| |||||||||||||||||| ||||| ||||| ||||| || 
Sbjct: 134153 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 134094

                                                                          
Query: 310    tgcctggcgaggcccatcagcagcttccaccagcattgcacgaggaggggcgatgcacac 369
              ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||
Sbjct: 134093 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 134034

                                                                          
Query: 370    tctggggtcaagttcacatacaacaaacactcagggaactcgcacagcgttaaggcattc 429
              |||||||||||||||||||||| ||| |  ||||| ||||| |||| ||| ||| | |||
Sbjct: 134033 tctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaagacgttc 133974

                               
Query: 430    ctgtacaagcctgccaa 446
              || ||||||||||||||
Sbjct: 133973 ctctacaagcctgccaa 133957



 Score =  105 bits (53), Expect = 1e-19
 Identities = 84/93 (90%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                          
Query: 93     gccgaagcgtggnacgggggagatccgcggccgcgtcgtctgcgacgtctgcgccgactc 152
              ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||  ||| |
Sbjct: 136970 gccgaggcgtgg-acgggggagatccgcggccacgtcgtctgcgacgtctgcggggacgc 136912

                                               
Query: 153    tgccatcgggcccgaggaccacgccctcgaagg 185
               |||||||| ||||||||||||| |||||||||
Sbjct: 136911 cgccatcggccccgaggaccacgtcctcgaagg 136879

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>ref|NM_124867.2| Arabidopsis thaliana unknown protein AT5G54855 mRNA, complete cds
          Length = 679

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 130/159 (81%)
 Strand = Plus / Plus

                                                                       
Query: 181 gaaggcgctgaggttgctgttctgtgcattacgaaatctggtgaggtcatcaactaccag 240
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 259 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 318

                                                                       
Query: 241 gcattcacaaactacgagggcatctacagtgttgcggagacgatgccggagagcgaccgg 300
           || ||||||||||   | ||  ||||||  ||||| ||||| ||||| |||||||| || 
Sbjct: 319 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 378

                                                  
Query: 301 tgggactcgtgcctggcgaggcccatcagcagcttccac 339
           |||||| | ||||| || || ||||||||||||||||||
Sbjct: 379 tgggacgcttgccttgcaagacccatcagcagcttccac 417

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>gb|AY093718.1| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, complete cds
          Length = 441

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 130/159 (81%)
 Strand = Plus / Plus

                                                                       
Query: 181 gaaggcgctgaggttgctgttctgtgcattacgaaatctggtgaggtcatcaactaccag 240
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 157 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 216

                                                                       
Query: 241 gcattcacaaactacgagggcatctacagtgttgcggagacgatgccggagagcgaccgg 300
           || ||||||||||   | ||  ||||||  ||||| ||||| ||||| |||||||| || 
Sbjct: 217 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 276

                                                  
Query: 301 tgggactcgtgcctggcgaggcccatcagcagcttccac 339
           |||||| | ||||| || || ||||||||||||||||||
Sbjct: 277 tgggacgcttgccttgcaagacccatcagcagcttccac 315

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>gb|AF410270.1|AF410270 Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 636

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 130/159 (81%)
 Strand = Plus / Plus

                                                                       
Query: 181 gaaggcgctgaggttgctgttctgtgcattacgaaatctggtgaggtcatcaactaccag 240
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 216 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 275

                                                                       
Query: 241 gcattcacaaactacgagggcatctacagtgttgcggagacgatgccggagagcgaccgg 300
           || ||||||||||   | ||  ||||||  ||||| ||||| ||||| |||||||| || 
Sbjct: 276 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 335

                                                  
Query: 301 tgggactcgtgcctggcgaggcccatcagcagcttccac 339
           |||||| | ||||| || || ||||||||||||||||||
Sbjct: 336 tgggacgcttgccttgcaagacccatcagcagcttccac 374

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>dbj|AK118946.1| Arabidopsis thaliana At5g54855 mRNA for unknown protein, complete
           cds, clone: RAFL21-28-L11
          Length = 635

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 130/159 (81%)
 Strand = Plus / Plus

                                                                       
Query: 181 gaaggcgctgaggttgctgttctgtgcattacgaaatctggtgaggtcatcaactaccag 240
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 229 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 288

                                                                       
Query: 241 gcattcacaaactacgagggcatctacagtgttgcggagacgatgccggagagcgaccgg 300
           || ||||||||||   | ||  ||||||  ||||| ||||| ||||| |||||||| || 
Sbjct: 289 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 348

                                                  
Query: 301 tgggactcgtgcctggcgaggcccatcagcagcttccac 339
           |||||| | ||||| || || ||||||||||||||||||
Sbjct: 349 tgggacgcttgccttgcaagacccatcagcagcttccac 387

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>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8
          Length = 80315

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 125/153 (81%)
 Strand = Plus / Plus

                                                                         
Query: 187   gctgaggttgctgttctgtgcattacgaaatctggtgaggtcatcaactaccaggcattc 246
             ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| || |||
Sbjct: 42976 gctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaagctttc 43035

                                                                         
Query: 247   acaaactacgagggcatctacagtgttgcggagacgatgccggagagcgaccggtgggac 306
             |||||||   | ||  ||||||  ||||| ||||| ||||| |||||||| || ||||||
Sbjct: 43036 acaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgttgggac 43095

                                              
Query: 307   tcgtgcctggcgaggcccatcagcagcttccac 339
              | ||||| || || ||||||||||||||||||
Sbjct: 43096 gcttgccttgcaagacccatcagcagcttccac 43128

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>gb|AY088675.1| Arabidopsis thaliana clone 9159 mRNA, complete sequence
          Length = 661

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 129/159 (81%)
 Strand = Plus / Plus

                                                                       
Query: 181 gaaggcgctgaggttgctgttctgtgcattacgaaatctggtgaggtcatcaactaccag 240
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 259 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 318

                                                                       
Query: 241 gcattcacaaactacgagggcatctacagtgttgcggagacgatgccggagagcgaccgg 300
           || ||||| ||||   | ||  ||||||  ||||| ||||| ||||| |||||||| || 
Sbjct: 319 gctttcactaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 378

                                                  
Query: 301 tgggactcgtgcctggcgaggcccatcagcagcttccac 339
           |||||| | ||||| || || ||||||||||||||||||
Sbjct: 379 tgggacgcttgccttgcaagacccatcagcagcttccac 417

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>emb|BX830033.1|CNS0A053 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB54ZF04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1507

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 119/150 (79%)
 Strand = Plus / Plus

                                                                        
Query: 187  gctgaggttgctgttctgtgcattacgaaatctggtgaggtcatcaactaccaggcattc 246
            ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| || || 
Sbjct: 1134 gctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaagctttt 1193

                                                                        
Query: 247  acaaactacgagggcatctacagtgttgcggagacgatgccggagagcgaccggtgggac 306
            |||||||   | ||  |||| |  ||||| ||||| ||||| |||||||| || ||||||
Sbjct: 1194 acaaactcaaaaggtgtctaaacagttgcagagacaatgccagagagcgaacgttgggac 1253

                                          
Query: 307  tcgtgcctggcgaggcccatcagcagcttc 336
             | | ||| || || |||||||||||||||
Sbjct: 1254 gcttcccttgcaagacccatcagcagcttc 1283

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 122      gccgcgtcgtctgcgacgtctgcgccg 148
                ||||||||||||||| |||||||||||
Sbjct: 11359213 gccgcgtcgtctgcgccgtctgcgccg 11359239



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 122     gccgcgtcgtctgcgacgtctgcg 145
               ||||||||||||||| ||||||||
Sbjct: 8951927 gccgcgtcgtctgcgccgtctgcg 8951904

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 122      gccgcgtcgtctgcgacgtctgcgccg 148
                ||||||||||||||| |||||||||||
Sbjct: 11355976 gccgcgtcgtctgcgccgtctgcgccg 11356002



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 122     gccgcgtcgtctgcgacgtctgcg 145
               ||||||||||||||| ||||||||
Sbjct: 8949762 gccgcgtcgtctgcgccgtctgcg 8949739

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>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005J15, complete sequence
          Length = 159270

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 122   gccgcgtcgtctgcgacgtctgcgccg 148
             ||||||||||||||| |||||||||||
Sbjct: 67510 gccgcgtcgtctgcgccgtctgcgccg 67536

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>gb|AY364845.1| Virus PhiCh1 pBgB51 capsid protein, int1, and capsid protein genes,
            complete cds
          Length = 5995

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 118  cgcggccgcgtcgtctgcgac 138
            |||||||||||||||||||||
Sbjct: 5722 cgcggccgcgtcgtctgcgac 5742

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>gb|AY364843.1| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-5 genes, complete
            cds
          Length = 5995

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 118  cgcggccgcgtcgtctgcgac 138
            |||||||||||||||||||||
Sbjct: 5722 cgcggccgcgtcgtctgcgac 5742

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>gb|AF440695.1| Virus PhiCh1, complete genome
          Length = 58498

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 118   cgcggccgcgtcgtctgcgac 138
             |||||||||||||||||||||
Sbjct: 27029 cgcggccgcgtcgtctgcgac 27049

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>ref|XM_959884.1| Neurospora crassa OR74A hypothetical protein (NCU03118.1) partial
           mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 123 ccgcgtcgtctgcgacgtctgcgccgac 150
           |||||| ||||||||||||| |||||||
Sbjct: 807 ccgcgtagtctgcgacgtctccgccgac 834

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>ref|XM_330553.1| Neurospora crassa OR74A hypothetical protein (NCU03118.1) partial
           mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 123 ccgcgtcgtctgcgacgtctgcgccgac 150
           |||||| ||||||||||||| |||||||
Sbjct: 807 ccgcgtagtctgcgacgtctccgccgac 834

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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 154     gccatcgggcccgaggaccacgcc 177
               ||||||||||||||| ||||||||
Sbjct: 4768923 gccatcgggcccgagcaccacgcc 4768900

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>emb|AL109838.11|HSDJ796I8 Human DNA sequence from clone RP4-796I8 on chromosome 20 Contains a
              putative novel gene, ESTs, STSs and GSSs, complete sequence
          Length = 121235

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    gcattgcacgaggaggggcg 361
              ||||||||||||||||||||
Sbjct: 100956 gcattgcacgaggaggggcg 100975

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>emb|X75952.1|SGHRDBSPR S.griseus hrdB and sprC genes for sigma factor and serine protease
          Length = 4449

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 gcggagacgatgccggagag 293
           ||||||||||||||||||||
Sbjct: 71  gcggagacgatgccggagag 52

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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   gcggagacgatgccggagag 293
             ||||||||||||||||||||
Sbjct: 78046 gcggagacgatgccggagag 78027

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>emb|AJ003022.1|SCA32WHIH Streptomyces coelicolor whiH gene
          Length = 3500

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 274  gcggagacgatgccggagag 293
            ||||||||||||||||||||
Sbjct: 2661 gcggagacgatgccggagag 2642

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>gb|AE012056.1| Xanthomonas axonopodis pv. citri str. 306,  section 434 of 469 of the
            complete genome
          Length = 9445

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 154  gccatcgggcccgaggaccacgcc 177
            ||||||||||||||| ||||||||
Sbjct: 7576 gccatcgggcccgagcaccacgcc 7553

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>gb|AE012520.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 428
            of 460 of the complete genome
          Length = 11484

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 154  gccatcgggcccgaggaccacgcc 177
            ||||||||||||||| ||||||||
Sbjct: 1662 gccatcgggcccgagcaccacgcc 1639

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>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0071M09, complete sequence
          Length = 143595

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 122   gccgcgtcgtctgcgacgtctgcg 145
             ||||||||||||||| ||||||||
Sbjct: 76788 gccgcgtcgtctgcgccgtctgcg 76765

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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 154     gccatcgggcccgaggaccacgcc 177
               ||||||||||||||| ||||||||
Sbjct: 4805492 gccatcgggcccgagcaccacgcc 4805469

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>gb|AC120182.8| Mus musculus chromosome 1, clone RP24-501C2, complete sequence
          Length = 188506

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   tcagcagcttccaccagcat 345
             ||||||||||||||||||||
Sbjct: 24887 tcagcagcttccaccagcat 24868

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 115     atccgcggccgcgtcgtctgcgacgtct 142
               |||||||||||||||||| || ||||||
Sbjct: 2820186 atccgcggccgcgtcgtcggcaacgtct 2820213

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>gb|AC008572.6|AC008572 Homo sapiens chromosome 5 clone CTC-551A13, complete sequence
          Length = 170529

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ctgaggttgctgttctgtgc 207
             ||||||||||||||||||||
Sbjct: 74384 ctgaggttgctgttctgtgc 74403

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>gb|AC093475.9| Mus musculus chromosome 1, clone RP23-54K22, complete sequence
          Length = 248543

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    tcagcagcttccaccagcat 345
              ||||||||||||||||||||
Sbjct: 216627 tcagcagcttccaccagcat 216608

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>gb|AY106131.1| Zea mays PCO096827 mRNA sequence
          Length = 952

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 306 ctcgtgcctggcgaggcccatcagcagcttcc 337
           |||| |||||||||||||| ||| ||||||||
Sbjct: 159 ctcgggcctggcgaggcccttcaccagcttcc 128


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,860,976
Number of Sequences: 3902068
Number of extensions: 2860976
Number of successful extensions: 52771
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52490
Number of HSP's gapped (non-prelim): 275
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result