| Clone Name | bags12d14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475422.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1548 Score = 65.9 bits (33), Expect = 1e-07 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 451 cacaccaggcagccagtttatgattggcaacaacaatttcagcagctttacagcttatgc 510 ||||||| ||| |||||| ||||||||||||||| ||||||||| ||| |||||||||| Sbjct: 1030 cacaccaagcaaacagtttttgattggcaacaacagtttcagcag-tttgcagcttatgc 1088 Query: 511 aacgaccgtgaagccaatctatggagcct 539 ||| || ||| |||||||| ||||||| Sbjct: 1089 aacacgcgcgaatccaatctacggagcct 1117
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0018K15, complete sequence Length = 168519 Score = 65.9 bits (33), Expect = 1e-07 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 451 cacaccaggcagccagtttatgattggcaacaacaatttcagcagctttacagcttatgc 510 ||||||| ||| |||||| ||||||||||||||| ||||||||| ||| |||||||||| Sbjct: 60993 cacaccaagcaaacagtttttgattggcaacaacagtttcagcag-tttgcagcttatgc 61051 Query: 511 aacgaccgtgaagccaatctatggagcct 539 ||| || ||| |||||||| ||||||| Sbjct: 61052 aacacgcgcgaatccaatctacggagcct 61080
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 65.9 bits (33), Expect = 1e-07 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 451 cacaccaggcagccagtttatgattggcaacaacaatttcagcagctttacagcttatgc 510 ||||||| ||| |||||| ||||||||||||||| ||||||||| ||| |||||||||| Sbjct: 23375457 cacaccaagcaaacagtttttgattggcaacaacagtttcagcag-tttgcagcttatgc 23375515 Query: 511 aacgaccgtgaagccaatctatggagcct 539 ||| || ||| |||||||| ||||||| Sbjct: 23375516 aacacgcgcgaatccaatctacggagcct 23375544
>gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018N12, complete sequence Length = 137127 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 caagcagacattggtacctct 356 ||||||||||||||||||||| Sbjct: 133162 caagcagacattggtacctct 133182
>emb|AL133521.1|SPAC1039 S.pombe chromosome I cosmid c1039 Length = 27893 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 caacaatttcagcagctttac 501 ||||||||||||||||||||| Sbjct: 1474 caacaatttcagcagctttac 1454
>ref|NM_001020423.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC1039.01), partial mRNA Length = 1704 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 caacaatttcagcagctttac 501 ||||||||||||||||||||| Sbjct: 100 caacaatttcagcagctttac 80
>gb|AC153769.3| Loxodonta africana clone VMRC15-397D22, complete sequence Length = 129001 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 acaattttttatagtccagaa 281 ||||||||||||||||||||| Sbjct: 74032 acaattttttatagtccagaa 74052
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 caagcagacattggtacctct 356 ||||||||||||||||||||| Sbjct: 5024551 caagcagacattggtacctct 5024531
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 caagcagacattggtacctct 356 ||||||||||||||||||||| Sbjct: 5091028 caagcagacattggtacctct 5091008
>ref|XM_632494.1| Dictyostelium discoideum hypothetical protein (DDB0187061), partial mRNA Length = 3702 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 gcaacaacaatttcagcagc 496 |||||||||||||||||||| Sbjct: 54 gcaacaacaatttcagcagc 73
>emb|AL662787.6| Human DNA sequence from clone RP11-162J2 on chromosome 9 Contains the 3' end of the gene for protein kinase anchoring protein GKAP42 (FKSG21), complete sequence Length = 63605 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 aattggacaattttttatag 274 |||||||||||||||||||| Sbjct: 36404 aattggacaattttttatag 36385
>emb|AL357894.6| Human DNA sequence from clone RP11-576P23 on chromosome Xp11.21-11.23 Contains a novel gene and a CpG island, complete sequence Length = 154847 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 cagaaaaaagtaactgttga 308 |||||||||||||||||||| Sbjct: 56487 cagaaaaaagtaactgttga 56468
>emb|AL356605.20| Human DNA sequence from clone RP11-414G18 on chromosome 6 Contains part of the TCBA1 gene for T-cell lymphoma breakpoint associated target 1, complete sequence Length = 169493 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cagaaaaaagtaactgttga 308 |||||||||||||||||||| Sbjct: 128796 cagaaaaaagtaactgttga 128815
>emb|AL845340.11| Mouse DNA sequence from clone RP23-169D3 on chromosome 4 Contains a novel gene and a CpG island, complete sequence Length = 193243 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cagccagtttatgattggca 479 |||||||||||||||||||| Sbjct: 7709 cagccagtttatgattggca 7690
>emb|BX897688.7| Zebrafish DNA sequence from clone DKEY-127J5, complete sequence Length = 70570 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 ttgacgtcaaagcaacatca 324 |||||||||||||||||||| Sbjct: 53379 ttgacgtcaaagcaacatca 53398
>gb|AC183106.3| Pan troglodytes BAC clone CH251-522A15 from chromosome 6, complete sequence Length = 173865 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 acaacaatttcagcagcttt 499 |||||||||||||||||||| Sbjct: 11120 acaacaatttcagcagcttt 11101
>gb|AC105204.5| Homo sapiens chromosome 15, clone RP11-1087J2, complete sequence Length = 210658 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 aattttttatagtccagaat 282 |||||||||||||||||||| Sbjct: 89415 aattttttatagtccagaat 89396
>gb|AC079208.4| Homo sapiens chromosome 15, clone RP11-1149K15, complete sequence Length = 168252 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 aattttttatagtccagaat 282 |||||||||||||||||||| Sbjct: 10890 aattttttatagtccagaat 10909
>gb|AC013551.10| Homo sapiens chromosome 15, clone RP11-133P13, complete sequence Length = 153823 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 aattttttatagtccagaat 282 |||||||||||||||||||| Sbjct: 53677 aattttttatagtccagaat 53658
>emb|AL954840.16| Zebrafish DNA sequence from clone DKEY-29K19, complete sequence Length = 167004 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 cttcaattggacaatttttt 270 |||||||||||||||||||| Sbjct: 42971 cttcaattggacaatttttt 42952
>emb|BX649510.18| Zebrafish DNA sequence from clone DKEY-110P14 in linkage group 22, complete sequence Length = 150194 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 ccagcagacacatgtttgat 209 |||||||||||||||||||| Sbjct: 23337 ccagcagacacatgtttgat 23356 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,666,739 Number of Sequences: 3902068 Number of extensions: 4666739 Number of successful extensions: 81023 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80914 Number of HSP's gapped (non-prelim): 106 length of query: 577 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 554 effective length of database: 17,143,297,704 effective search space: 9497386928016 effective search space used: 9497386928016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)