ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12d14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475422.1| Oryza sativa (japonica cultivar-group), predic... 66 1e-07
2gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
5emb|AL133521.1|SPAC1039 S.pombe chromosome I cosmid c1039 42 2.0
6ref|NM_001020423.1| Schizosaccharomyces pombe 972h- hypothetical... 42 2.0
7gb|AC153769.3| Loxodonta africana clone VMRC15-397D22, complete ... 42 2.0
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
10ref|XM_632494.1| Dictyostelium discoideum hypothetical protein (... 40 7.8
11emb|AL662787.6| Human DNA sequence from clone RP11-162J2 on chro... 40 7.8
12emb|AL357894.6| Human DNA sequence from clone RP11-576P23 on chr... 40 7.8
13emb|AL356605.20| Human DNA sequence from clone RP11-414G18 on ch... 40 7.8
14emb|AL845340.11| Mouse DNA sequence from clone RP23-169D3 on chr... 40 7.8
15emb|BX897688.7| Zebrafish DNA sequence from clone DKEY-127J5, co... 40 7.8
16gb|AC183106.3| Pan troglodytes BAC clone CH251-522A15 from chrom... 40 7.8
17gb|AC105204.5| Homo sapiens chromosome 15, clone RP11-1087J2, co... 40 7.8
18gb|AC079208.4| Homo sapiens chromosome 15, clone RP11-1149K15, c... 40 7.8
19gb|AC013551.10| Homo sapiens chromosome 15, clone RP11-133P13, c... 40 7.8
20emb|AL954840.16| Zebrafish DNA sequence from clone DKEY-29K19, c... 40 7.8
21emb|BX649510.18| Zebrafish DNA sequence from clone DKEY-110P14 i... 40 7.8

>ref|XM_475422.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1548

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 76/89 (85%), Gaps = 1/89 (1%)
 Strand = Plus / Plus

                                                                        
Query: 451  cacaccaggcagccagtttatgattggcaacaacaatttcagcagctttacagcttatgc 510
            ||||||| |||  |||||| ||||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 1030 cacaccaagcaaacagtttttgattggcaacaacagtttcagcag-tttgcagcttatgc 1088

                                         
Query: 511  aacgaccgtgaagccaatctatggagcct 539
            |||   || ||| |||||||| |||||||
Sbjct: 1089 aacacgcgcgaatccaatctacggagcct 1117



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>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0018K15, complete sequence
          Length = 168519

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 76/89 (85%), Gaps = 1/89 (1%)
 Strand = Plus / Plus

                                                                         
Query: 451   cacaccaggcagccagtttatgattggcaacaacaatttcagcagctttacagcttatgc 510
             ||||||| |||  |||||| ||||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 60993 cacaccaagcaaacagtttttgattggcaacaacagtttcagcag-tttgcagcttatgc 61051

                                          
Query: 511   aacgaccgtgaagccaatctatggagcct 539
             |||   || ||| |||||||| |||||||
Sbjct: 61052 aacacgcgcgaatccaatctacggagcct 61080



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 76/89 (85%), Gaps = 1/89 (1%)
 Strand = Plus / Plus

                                                                            
Query: 451      cacaccaggcagccagtttatgattggcaacaacaatttcagcagctttacagcttatgc 510
                ||||||| |||  |||||| ||||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 23375457 cacaccaagcaaacagtttttgattggcaacaacagtttcagcag-tttgcagcttatgc 23375515

                                             
Query: 511      aacgaccgtgaagccaatctatggagcct 539
                |||   || ||| |||||||| |||||||
Sbjct: 23375516 aacacgcgcgaatccaatctacggagcct 23375544



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>gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018N12,
              complete sequence
          Length = 137127

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 336    caagcagacattggtacctct 356
              |||||||||||||||||||||
Sbjct: 133162 caagcagacattggtacctct 133182



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>emb|AL133521.1|SPAC1039 S.pombe chromosome I cosmid c1039
          Length = 27893

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 481  caacaatttcagcagctttac 501
            |||||||||||||||||||||
Sbjct: 1474 caacaatttcagcagctttac 1454



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>ref|NM_001020423.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC1039.01),
           partial mRNA
          Length = 1704

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 481 caacaatttcagcagctttac 501
           |||||||||||||||||||||
Sbjct: 100 caacaatttcagcagctttac 80



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>gb|AC153769.3| Loxodonta africana clone VMRC15-397D22, complete sequence
          Length = 129001

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 261   acaattttttatagtccagaa 281
             |||||||||||||||||||||
Sbjct: 74032 acaattttttatagtccagaa 74052



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 336     caagcagacattggtacctct 356
               |||||||||||||||||||||
Sbjct: 5024551 caagcagacattggtacctct 5024531



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 336     caagcagacattggtacctct 356
               |||||||||||||||||||||
Sbjct: 5091028 caagcagacattggtacctct 5091008



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>ref|XM_632494.1| Dictyostelium discoideum hypothetical protein (DDB0187061), partial
           mRNA
          Length = 3702

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 477 gcaacaacaatttcagcagc 496
           ||||||||||||||||||||
Sbjct: 54  gcaacaacaatttcagcagc 73



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>emb|AL662787.6| Human DNA sequence from clone RP11-162J2 on chromosome 9 Contains the
             3' end of the gene for protein kinase anchoring protein
             GKAP42 (FKSG21), complete sequence
          Length = 63605

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aattggacaattttttatag 274
             ||||||||||||||||||||
Sbjct: 36404 aattggacaattttttatag 36385



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>emb|AL357894.6| Human DNA sequence from clone RP11-576P23 on chromosome Xp11.21-11.23
             Contains a novel gene and a CpG island, complete sequence
          Length = 154847

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   cagaaaaaagtaactgttga 308
             ||||||||||||||||||||
Sbjct: 56487 cagaaaaaagtaactgttga 56468



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>emb|AL356605.20| Human DNA sequence from clone RP11-414G18 on chromosome 6 Contains part
              of the TCBA1 gene for T-cell lymphoma breakpoint associated
              target 1, complete sequence
          Length = 169493

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    cagaaaaaagtaactgttga 308
              ||||||||||||||||||||
Sbjct: 128796 cagaaaaaagtaactgttga 128815



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>emb|AL845340.11| Mouse DNA sequence from clone RP23-169D3 on chromosome 4 Contains a
            novel gene and a CpG island, complete sequence
          Length = 193243

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 460  cagccagtttatgattggca 479
            ||||||||||||||||||||
Sbjct: 7709 cagccagtttatgattggca 7690



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>emb|BX897688.7| Zebrafish DNA sequence from clone DKEY-127J5, complete sequence
          Length = 70570

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   ttgacgtcaaagcaacatca 324
             ||||||||||||||||||||
Sbjct: 53379 ttgacgtcaaagcaacatca 53398



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>gb|AC183106.3| Pan troglodytes BAC clone CH251-522A15 from chromosome 6, complete
             sequence
          Length = 173865

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   acaacaatttcagcagcttt 499
             ||||||||||||||||||||
Sbjct: 11120 acaacaatttcagcagcttt 11101



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>gb|AC105204.5| Homo sapiens chromosome 15, clone RP11-1087J2, complete sequence
          Length = 210658

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   aattttttatagtccagaat 282
             ||||||||||||||||||||
Sbjct: 89415 aattttttatagtccagaat 89396



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>gb|AC079208.4| Homo sapiens chromosome 15, clone RP11-1149K15, complete sequence
          Length = 168252

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   aattttttatagtccagaat 282
             ||||||||||||||||||||
Sbjct: 10890 aattttttatagtccagaat 10909



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>gb|AC013551.10| Homo sapiens chromosome 15, clone RP11-133P13, complete sequence
          Length = 153823

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   aattttttatagtccagaat 282
             ||||||||||||||||||||
Sbjct: 53677 aattttttatagtccagaat 53658



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>emb|AL954840.16| Zebrafish DNA sequence from clone DKEY-29K19, complete sequence
          Length = 167004

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   cttcaattggacaatttttt 270
             ||||||||||||||||||||
Sbjct: 42971 cttcaattggacaatttttt 42952



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>emb|BX649510.18| Zebrafish DNA sequence from clone DKEY-110P14 in linkage group 22,
             complete sequence
          Length = 150194

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   ccagcagacacatgtttgat 209
             ||||||||||||||||||||
Sbjct: 23337 ccagcagacacatgtttgat 23356


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,666,739
Number of Sequences: 3902068
Number of extensions: 4666739
Number of successful extensions: 81023
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80914
Number of HSP's gapped (non-prelim): 106
length of query: 577
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 554
effective length of database: 17,143,297,704
effective search space: 9497386928016
effective search space used: 9497386928016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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