ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags11n22 |
|---|---|
| Clone Library Name | barley_pub |
>SSRP1_CATRO (Q39601) Structure-specific recognition protein 1 homolog (HMG| protein) Length = 639 Score = 219 bits (558), Expect = 4e-57 Identities = 101/146 (69%), Positives = 123/146 (84%) Frame = +3 Query: 138 MTDGHLFNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSY 317 M DGHLFNNI+LGGR G NPGQ R++SGG+ WKKQGG K +EVDK+D+V +TWMK+PRS Sbjct: 1 MADGHLFNNITLGGRGGTNPGQLRVHSGGILWKKQGGAKAVEVDKSDMVGLTWMKVPRSN 60 Query: 318 QLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLS 497 QL V K+G+ Y F GFR+QDV++LT+++Q G TPEEKQLSVSG NWG VD+NGNML+ Sbjct: 61 QLGVRIKDGLFYKFTGFRDQDVASLTSYLQSTCGITPEEKQLSVSGKNWGEVDLNGNMLT 120 Query: 498 FNVGSKEAFEVSLSDVSQTQLQGKTD 575 F VGSK+AFEVSL+DV+QTQLQGK D Sbjct: 121 FLVGSKQAFEVSLADVAQTQLQGKND 146
>SSRP1_ARATH (Q05153) Structure-specific recognition protein 1 homolog (HMG| protein) Length = 646 Score = 204 bits (519), Expect = 1e-52 Identities = 96/146 (65%), Positives = 118/146 (80%) Frame = +3 Query: 138 MTDGHLFNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSY 317 M DGH FNNISL GR G NPG ++ SGG+ WKKQGGGK +EVD++DIVSV+W K+ +S Sbjct: 1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60 Query: 318 QLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLS 497 QL V TK+G+ Y F GFR+QDV +L++F Q + G TP+EKQLSVSG NWG VD++GN L+ Sbjct: 61 QLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLT 120 Query: 498 FNVGSKEAFEVSLSDVSQTQLQGKTD 575 F VGSK+AFEVSL+DVSQTQLQGK D Sbjct: 121 FLVGSKQAFEVSLADVSQTQLQGKND 146
>SSRP1_RAT (Q04931) Structure-specific recognition protein 1 (SSRP1)| (Recombination signal sequence recognition protein) (T160) Length = 709 Score = 85.1 bits (209), Expect = 1e-16 Identities = 44/132 (33%), Positives = 68/132 (51%) Frame = +3 Query: 156 FNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGT 335 FN+I + N G+ RL G+ +K GK + ++ W ++ + L + T Sbjct: 7 FNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLT 66 Query: 336 KEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSK 515 K G Y + GFRE + L++F + + EK L V G NWG V G +LSF++G + Sbjct: 67 KNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQ 126 Query: 516 EAFEVSLSDVSQ 551 FE+ LS+VSQ Sbjct: 127 PVFEIPLSNVSQ 138
>SSRP1_HUMAN (Q08945) Structure-specific recognition protein 1 (SSRP1)| (Recombination signal sequence recognition protein) (T160) (Chromatin-specific transcription elongation factor 80 kDa subunit) (FACT 80 kDa subunit) Length = 709 Score = 84.7 bits (208), Expect = 2e-16 Identities = 43/132 (32%), Positives = 68/132 (51%) Frame = +3 Query: 156 FNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGT 335 FN++ + N G+ RL G+ +K GK + ++ W ++ + L + T Sbjct: 7 FNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLT 66 Query: 336 KEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSK 515 K G Y + GFRE + L++F + + EK L V G NWG V G +LSF++G + Sbjct: 67 KNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQ 126 Query: 516 EAFEVSLSDVSQ 551 FE+ LS+VSQ Sbjct: 127 PVFEIPLSNVSQ 138
>SSRP1_MOUSE (Q08943) Structure-specific recognition protein 1 (SSRP1)| (Recombination signal sequence recognition protein) (T160) Length = 708 Score = 83.6 bits (205), Expect = 4e-16 Identities = 43/131 (32%), Positives = 67/131 (51%) Frame = +3 Query: 156 FNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGT 335 FN+I + N G+ RL G+ +K GK + ++ W ++ + L + T Sbjct: 7 FNDIFQEVKGSMNDGRLRLSPSGIIFKNSKTGKVDNIQAGELTEGIWPRVALGHGLKLLT 66 Query: 336 KEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSK 515 K G Y + GFRE + L++F + + EK L V G NWG V G +LSF++G + Sbjct: 67 KNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQ 126 Query: 516 EAFEVSLSDVS 548 FE+ LS+VS Sbjct: 127 PVFEIPLSNVS 137
>SSRP_DROME (Q05344) Single-strand recognition protein (SSRP) (Chorion-factor| 5) Length = 723 Score = 74.3 bits (181), Expect = 2e-13 Identities = 46/138 (33%), Positives = 69/138 (50%) Frame = +3 Query: 138 MTDGHLFNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSY 317 MTD +N+I+ R G+ ++ + +K GK ++ DI + K ++ Sbjct: 1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTW 60 Query: 318 QLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLS 497 L V TK G+ + F GFR+ + L FI+ EK++ V G NWG G++LS Sbjct: 61 GLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120 Query: 498 FNVGSKEAFEVSLSDVSQ 551 F+ SK FEV LS VSQ Sbjct: 121 FDKESKTIFEVPLSHVSQ 138
>SSRP1_CHICK (Q04678) Structure-specific recognition protein 1 (SSRP1)| (Recombination signal sequence recognition protein) (T160) (Fragment) Length = 669 Score = 71.2 bits (173), Expect = 2e-12 Identities = 33/96 (34%), Positives = 53/96 (55%) Frame = +3 Query: 264 VDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQL 443 + +++ W ++ + L + TK G Y + GFRE + L++F + + EK L Sbjct: 5 IQASELAEGVWRRVALGHGLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDL 64 Query: 444 SVSGHNWGAVDINGNMLSFNVGSKEAFEVSLSDVSQ 551 V G NWG V G +LSF++G + FE+ LS+VSQ Sbjct: 65 CVKGWNWGTVRFGGQLLSFDIGEQPVFEIPLSNVSQ 100
>SSRP1_CAEEL (P41848) Probable structure-specific recognition protein 1 (SSRP1)| (Recombination signal sequence recognition protein) Length = 697 Score = 67.8 bits (164), Expect = 2e-11 Identities = 33/117 (28%), Positives = 59/117 (50%) Frame = +3 Query: 198 GQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQ 377 G +L L +K GGK++ V +DI + W K+ L VG +G + F GF++ Sbjct: 20 GTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPGLRVGLNDGGAHRFGGFKDT 79 Query: 378 DVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSKEAFEVSLSDVS 548 D+ + +F N + ++ L + G N+G ++ G + F+ K FE+ ++VS Sbjct: 80 DLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEFSWEDKPIFEIPCTNVS 136
>YMG9_YEAST (Q04636) Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic| region Length = 552 Score = 63.9 bits (154), Expect = 3e-10 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Frame = +3 Query: 198 GQFRLYSGGLAWKKQGGG--------KTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRY 353 G+FR+ GL WK G K + ++ +V W + R Y L + TK Sbjct: 17 GRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVI 76 Query: 354 VFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSKEAFEVS 533 GF + D + + N + E+++ S+ G NWG D+ N + F + K FE+ Sbjct: 77 QLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIP 136 Query: 534 LSDVSQTQLQGKTD 575 + ++ T L K + Sbjct: 137 YARINNTNLTSKNE 150
>CTND2_MOUSE (O35927) Catenin delta-2 (Neural plakophilin-related ARM-repeat| protein) (NPRAP) (Neurojungin) Length = 1247 Score = 33.5 bits (75), Expect = 0.45 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +2 Query: 14 PPRRGAPKSRTLGGDPTARERAGHEPVATAAA 109 PPR G+P + T GG PT +R G P A A Sbjct: 259 PPRGGSPLTTTQGGSPTKLQRGGSAPEGAAYA 290
>RNE_BUCAI (P57429) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 902 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/77 (29%), Positives = 34/77 (44%) Frame = +3 Query: 234 KKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDVSNLTNFIQKN 413 K+Q GGKTI IV MK P + E Y G S +T+F++KN Sbjct: 464 KRQAGGKTI------IVPSKKMKTPHYSVSRIRKSESKNYTRYGLSNIRQSKITSFLKKN 517 Query: 414 TGTTPEEKQLSVSGHNW 464 +++ L V+ N+ Sbjct: 518 LLKKKQKEILDVANFNF 534
>JHEB_TRINI (P30810) Juvenile hormone esterase, isoform B (EC 3.1.1.59) (JH| esterase) (JHE-B) (Fragments) Length = 63 Score = 31.2 bits (69), Expect = 2.2 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +3 Query: 315 YQLSVGTKEGIRYVFKGFREQDVSNLTNFIQK 410 YQ VG E + YVFKG + QD+ + T + K Sbjct: 32 YQFGVGXIEXLTYVFKGSQYQDIESPTAYQSK 63
>MRE11_METKA (Q8TXI3) DNA double-strand break repair protein mre11| Length = 451 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = +3 Query: 237 KQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNT 416 K+ G +E D+ +V ++++ S +LSV G R+ + R + + K+T Sbjct: 235 KRRGFFLVEFDRGGLVEYEFVEVEWSRELSVVEVSGERWEEELRRRVRRGQIVKVVAKDT 294 Query: 417 GTTPEE 434 G +PEE Sbjct: 295 GASPEE 300
>THRC_METJA (Q58860) Probable threonine synthase (EC 4.2.3.1) (TS)| Length = 405 Score = 30.4 bits (67), Expect = 3.8 Identities = 21/78 (26%), Positives = 37/78 (47%) Frame = +3 Query: 246 GGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNTGTT 425 G KTI + D + W ++P + VG I ++KGF+E +++ + + + K TG Sbjct: 208 GQKTIAFEICD--QLNW-QVPDRVIVPVGNAGNISAIWKGFKEFEITGIIDELPKMTGIQ 264 Query: 426 PEEKQLSVSGHNWGAVDI 479 + + V A DI Sbjct: 265 ADGAKPIVEAFRKRAKDI 282
>CTND2_HUMAN (Q9UQB3) Catenin delta-2 (Delta-catenin) (Neural| plakophilin-related ARM-repeat protein) (NPRAP) (Neurojungin) (GT24) Length = 1225 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +2 Query: 14 PPRRGAPKSRTLGGDPTARERAGHEPV-ATAAA 109 PPR G+P + GG PT +R G P AT AA Sbjct: 262 PPRGGSPLAAPQGGSPTKLQRGGSAPEGATYAA 294
>GATA_CAUCR (Q9A5L0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 489 Score = 30.0 bits (66), Expect = 4.9 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Frame = +3 Query: 180 RVGNNPGQF-RLYSGGLAWKKQGGGKTIEVDKAD---IVSVTWMKIPRSYQLSVGTKEGI 347 RV N P + +L+ G+AW K+ G + +++ + ++ P ++ +G+ Sbjct: 271 RVDNMPAEIEKLWQDGIAWLKEAGCEIVDISLPHTKYALPAYYIVAPAEASSNLARYDGM 330 Query: 348 RYVFKGFREQDVSNLTNFIQKNT 416 RY G RE+ +NLT I +NT Sbjct: 331 RY---GLREEG-ANLTE-IYENT 348
>ACON_BRAJA (P70920) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 906 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = +1 Query: 310 DLISLVLGPKRASGTCSKASVNR-MLVTLLTSYKRTREPHQR 432 D++ + GPKR G + SV V L YK+T EP +R Sbjct: 379 DVVPSMAGPKRPEGRIALPSVAEGFSVALANEYKKTEEPAKR 420
>FIBL_BOMMO (P21828) Fibroin light chain precursor (Fib-L) (L-fibroin)| Length = 262 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = +3 Query: 147 GHLFNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKA 275 GH+ N++L ++ NPGQ R YS G A GGG+ + + A Sbjct: 131 GHVGQNLNLINQLVINPGQLR-YSVGPALGCAGGGRIYDFEAA 172
>SYV_PROMM (Q7TUI9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 929 Score = 29.3 bits (64), Expect = 8.4 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Frame = +3 Query: 228 AWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDV----SNLT 395 AWK++ GG+ ++ + SV W + + + L G +R F EQ + L Sbjct: 132 AWKEESGGRIVDQLRRLGYSVDWQR--QRFTLDEGLSAAVREAFVRLHEQGLIYRGEYLV 189 Query: 396 NFIQKNTGTTP--EEKQLSVSGHNW 464 N+ + E + V GH W Sbjct: 190 NWCPASGSAVSDLEVEMKEVDGHLW 214
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 29.3 bits (64), Expect = 8.4 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 7/35 (20%) Frame = +1 Query: 13 SSSPRXSQIPHPRRR-------PYRARESGSRACS 96 S SP S+ P PRRR P R RESG RA + Sbjct: 821 SRSPSGSRSPSPRRRRDSPSRSPVRDRESGGRAAA 855
>RUVA_RHIET (Q9L9C4) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 206 Score = 29.3 bits (64), Expect = 8.4 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -2 Query: 144 PSSRPLSLRPVTAAAVATGS*PALSRAVGSPPRV 43 P SRPL+ RP + +A A+SRA G P+V Sbjct: 89 PCSRPLNARPSSPMPIALQDRAAVSRAPGVGPKV 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,367,970 Number of Sequences: 219361 Number of extensions: 1514001 Number of successful extensions: 4814 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4658 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4810 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
