ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags11n20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476711.1| Oryza sativa (japonica cultivar-group), mRNA 502 e-139
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 153 7e-34
3dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 153 7e-34
4gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubi... 58 3e-05
5gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
8dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
11emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb... 50 0.008
12gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HB... 50 0.008
13gb|AY104649.1| Zea mays PCO133877 mRNA sequence 48 0.030
14ref|NM_112024.3| Arabidopsis thaliana cysteine-type endopeptidas... 46 0.12
15gb|AY064010.1| Arabidopsis thaliana At3g11910 mRNA sequence 46 0.12
16gb|BT002760.1| Arabidopsis thaliana clone C105177 putative ubiqu... 46 0.12
17gb|AC161802.7| Mus musculus chromosome 5, clone RP23-477G6, comp... 44 0.47
18gb|AE014075.1| Escherichia coli CFT073, complete genome 42 1.9
19emb|BX470072.8| Zebrafish DNA sequence from clone DKEY-163I6 in ... 42 1.9
20gb|AC078881.5| Homo sapiens BAC clone RP11-130F10 from 4, comple... 42 1.9
21gb|DQ335213.1| Escherichia coli strain O1:K1 fosmid 009-H10, com... 42 1.9
22gb|AF020626.1|AF020626 Vibrio sp. 172 plasmid pTM172 origin of r... 42 1.9
23gb|AC116759.13| Mus musculus chromosome 18, clone RP23-383E12, c... 40 7.3
24ref|NM_196055.1| Oryza sativa (japonica cultivar-group) hypothet... 40 7.3
25ref|XM_476932.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
26gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, com... 40 7.3
27gb|U80032.1| Caenorhabditis elegans cosmid C32E12, complete sequ... 40 7.3
28gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, comple... 40 7.3
29gb|AC140782.4| Mus musculus BAC clone RP24-417N13 from chromosom... 40 7.3
30gb|AC127318.4| Mus musculus BAC clone RP23-228J12 from chromosom... 40 7.3
31gb|AC127414.4| Mus musculus BAC clone RP23-246P24 from chromosom... 40 7.3
32ref|XM_739708.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 7.3
33gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 7.3
34emb|BX000471.7| Zebrafish DNA sequence from clone DKEY-11C8 in l... 40 7.3
35emb|BX511068.5| Zebrafish DNA sequence from clone RP71-56H12 in ... 40 7.3
36gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 gen... 40 7.3
37dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
38gb|U18530.1|SCE9871 Saccharomyces cerevisiae chromosome V cosmid... 40 7.3
39emb|BX248116.8| Zebrafish DNA sequence from clone CH211-245G15 i... 40 7.3
40dbj|AK111813.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
41dbj|AK111777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
42emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 i... 40 7.3
43emb|AL110500.1|CEY87G2A Caenorhabditis elegans YAC Y87G2A, compl... 40 7.3
44gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, co... 40 7.3
45gb|DQ331806.1| Synthetic construct Saccharomyces cerevisiae clon... 40 7.3
46gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
47dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 7.3
48emb|AL683854.20| Mouse DNA sequence from clone RP23-237K13 on ch... 40 7.3 
>ref|XM_476711.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3351

 Score =  502 bits (253), Expect = e-139
 Identities = 433/493 (87%)
 Strand = Plus / Plus

                                                                        
Query: 44   cttgccagctggaagatggtgatattgtttgttttcaaaaatccccaaagccagatactt 103
            |||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||| 
Sbjct: 2291 cttgccagcttgaagatggtgacatcgtttgttttcaaaaatctccaaagccagatactg 2350

                                                                        
Query: 104  ctgaccaatttagataccctgatgtcccatcgtttctggtgtatatacgtaacagacagg 163
            ||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| | ||||
Sbjct: 2351 ctgaccaatatagataccctgatgtcccatcctttctggtgtatatacggaaccggcagg 2410

                                                                        
Query: 164  ttgtccacttccggtcgttggagaagcccaaggaggatgacttttgcctagagatgtcaa 223
            | ||||| || || || |||||||||||||| |||||||| |||||  |||||||||| |
Sbjct: 2411 tagtccattttcgttcattggagaagcccaaagaggatgatttttgtttagagatgtcga 2470

                                                                        
Query: 224  agattttcacgtacgatgaagttgtagaaaaagtcgctcaacagcttggtgttgatgacc 283
            ||  ||||||||| |||||||| || ||||| || |||||| | ||||||||||||||||
Sbjct: 2471 aggctttcacgtatgatgaagtagtggaaaaggtggctcaaaaacttggtgttgatgacc 2530

                                                                        
Query: 284  catcaaaaattcgtcttacatcacataattgttactctcaacagcctaagcctcaaccaa 343
            || | |||||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| |
Sbjct: 2531 caactaaaattcggcttacatcgcataactgttattctcaacaacctaaacctcaaccta 2590

                                                                        
Query: 344  ttaagtacagaggcgttgaacgtttgctagatatgctgattcattataatcagacttctg 403
            |||| |||||||| ||||| |||||||| || ||||||||||| ||||| ||||||||||
Sbjct: 2591 ttaaatacagaggtgttgagcgtttgctggacatgctgattcactataaccagacttctg 2650

                                                                        
Query: 404  atattctgtactatgaagtattggatatacccctgccagaactacaggcattgaagacat 463
            ||||||| ||||||||||||||||||||||| || |||||| |||| ||  |||||||||
Sbjct: 2651 atattctttactatgaagtattggatataccactcccagaattacaagctctgaagacat 2710

                                                                        
Query: 464  taaaagttacatatcatcatgccaccaaggatgaggtgtctgttcacagtataagattgc 523
            ||||||||||||||||||||| ||| || ||||||||||| ||||||||||| || ||||
Sbjct: 2711 taaaagttacatatcatcatggcacaaaagatgaggtgtcagttcacagtattaggttgc 2770

                         
Query: 524  caaaaaatagcac 536
            |||| || |||||
Sbjct: 2771 caaagaacagcac 2783
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  153 bits (77), Expect = 7e-34
 Identities = 143/165 (86%)
 Strand = Plus / Plus

                                                                           
Query: 228     tttcacgtacgatgaagttgtagaaaaagtcgctcaacagcttggtgttgatgacccatc 287
               ||||||||| |||||||| || ||||| || |||||| | |||||||||||||||||| |
Sbjct: 3452706 tttcacgtatgatgaagtagtggaaaaggtggctcaaaaacttggtgttgatgacccaac 3452765

                                                                           
Query: 288     aaaaattcgtcttacatcacataattgttactctcaacagcctaagcctcaaccaattaa 347
                |||||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| |||||
Sbjct: 3452766 taaaattcggcttacatcgcataactgttattctcaacaacctaaacctcaacctattaa 3452825

                                                            
Query: 348     gtacagaggcgttgaacgtttgctagatatgctgattcattataa 392
                |||||||| ||||| |||||||| || ||||||||||| |||||
Sbjct: 3452826 atacagaggtgttgagcgtttgctggacatgctgattcactataa 3452870



 Score =  151 bits (76), Expect = 3e-33
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                           
Query: 49      cagctggaagatggtgatattgtttgttttcaaaaatccccaaagccagatacttctgac 108
               ||||| ||||||||||| || ||||||||||||||||| ||||||||||||||| |||||
Sbjct: 3452114 cagcttgaagatggtgacatcgtttgttttcaaaaatctccaaagccagatactgctgac 3452173

                                                           
Query: 109     caatttagataccctgatgtcccatcgtttctggtgtatatacg 152
               |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 3452174 caatatagataccctgatgtcccatcctttctggtgtatatacg 3452217



 Score =  133 bits (67), Expect = 7e-28
 Identities = 97/107 (90%)
 Strand = Plus / Plus

                                                                           
Query: 394     cagacttctgatattctgtactatgaagtattggatatacccctgccagaactacaggca 453
               ||||||||||||||||| ||||||||||||||||||||||| || |||||| |||| || 
Sbjct: 3452968 cagacttctgatattctttactatgaagtattggatataccactcccagaattacaagct 3453027

                                                              
Query: 454     ttgaagacattaaaagttacatatcatcatgccaccaaggatgaggt 500
                |||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct: 3453028 ctgaagacattaaaagttacatatcatcatggcacaaaagatgaggt 3453074



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                           
Query: 160     caggttgtccacttccggtcgttggagaagcccaaggaggatgacttttgcctagagatg 219
               ||||| ||||| || || || |||||||||||||| |||||||| |||||  ||||||||
Sbjct: 3452554 caggtagtccattttcgttcattggagaagcccaaagaggatgatttttgtttagagatg 3452613

                
Query: 220     t 220
               |
Sbjct: 3452614 t 3452614



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 497     aggtgtctgttcacagtataagattgccaaaaaatagcac 536
               ||||||| ||||||||||| || |||||||| || |||||
Sbjct: 3453158 aggtgtcagttcacagtattaggttgccaaagaacagcac 3453197
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>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score =  153 bits (77), Expect = 7e-34
 Identities = 143/165 (86%)
 Strand = Plus / Plus

                                                                         
Query: 228   tttcacgtacgatgaagttgtagaaaaagtcgctcaacagcttggtgttgatgacccatc 287
             ||||||||| |||||||| || ||||| || |||||| | |||||||||||||||||| |
Sbjct: 92526 tttcacgtatgatgaagtagtggaaaaggtggctcaaaaacttggtgttgatgacccaac 92585

                                                                         
Query: 288   aaaaattcgtcttacatcacataattgttactctcaacagcctaagcctcaaccaattaa 347
              |||||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| |||||
Sbjct: 92586 taaaattcggcttacatcgcataactgttattctcaacaacctaaacctcaacctattaa 92645

                                                          
Query: 348   gtacagaggcgttgaacgtttgctagatatgctgattcattataa 392
              |||||||| ||||| |||||||| || ||||||||||| |||||
Sbjct: 92646 atacagaggtgttgagcgtttgctggacatgctgattcactataa 92690



 Score =  151 bits (76), Expect = 3e-33
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                         
Query: 49    cagctggaagatggtgatattgtttgttttcaaaaatccccaaagccagatacttctgac 108
             ||||| ||||||||||| || ||||||||||||||||| ||||||||||||||| |||||
Sbjct: 91934 cagcttgaagatggtgacatcgtttgttttcaaaaatctccaaagccagatactgctgac 91993

                                                         
Query: 109   caatttagataccctgatgtcccatcgtttctggtgtatatacg 152
             |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 91994 caatatagataccctgatgtcccatcctttctggtgtatatacg 92037



 Score =  133 bits (67), Expect = 7e-28
 Identities = 97/107 (90%)
 Strand = Plus / Plus

                                                                         
Query: 394   cagacttctgatattctgtactatgaagtattggatatacccctgccagaactacaggca 453
             ||||||||||||||||| ||||||||||||||||||||||| || |||||| |||| || 
Sbjct: 92788 cagacttctgatattctttactatgaagtattggatataccactcccagaattacaagct 92847

                                                            
Query: 454   ttgaagacattaaaagttacatatcatcatgccaccaaggatgaggt 500
              |||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct: 92848 ctgaagacattaaaagttacatatcatcatggcacaaaagatgaggt 92894



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                         
Query: 160   caggttgtccacttccggtcgttggagaagcccaaggaggatgacttttgcctagagatg 219
             ||||| ||||| || || || |||||||||||||| |||||||| |||||  ||||||||
Sbjct: 92374 caggtagtccattttcgttcattggagaagcccaaagaggatgatttttgtttagagatg 92433

              
Query: 220   t 220
             |
Sbjct: 92434 t 92434



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 497   aggtgtctgttcacagtataagattgccaaaaaatagcac 536
             ||||||| ||||||||||| || |||||||| || |||||
Sbjct: 92978 aggtgtcagttcacagtattaggttgccaaagaacagcac 93017
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>gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubiquitin protease
           mRNA, partial cds
          Length = 1593

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 157 agacaggttgtccacttccggtcgttggagaagcccaaggaggatgacttttg 209
           |||||||| || ||||||||||| |||||||| || ||||||||||| |||||
Sbjct: 103 agacaggtggtgcacttccggtctttggagaaaccaaaggaggatgatttttg 155



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 277 gatgacccatcaaaaattcgtcttacatc 305
           ||||| |||||||||||||| ||||||||
Sbjct: 223 gatgatccatcaaaaattcgccttacatc 251



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 373 gatatgctgattcattataatcagacttctga 404
           ||||||||  ||||||| ||||||||||||||
Sbjct: 319 gatatgcttgttcattacaatcagacttctga 350
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>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0077M24, complete sequence
          Length = 128920

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                         
Query: 265   cagcttggtgttgatgacccatcaaaaattcgtcttacatcacataattgttactctcaa 324
             ||||||||||| ||||| ||| | ||||||||||| ||||| ||||| || || || || 
Sbjct: 85567 cagcttggtgtggatgatccagcgaaaattcgtctaacatcccataactgctattcgcag 85508

                              
Query: 325   cagcctaagcctcaacc 341
             |||||||| || |||||
Sbjct: 85507 cagcctaaaccgcaacc 85491
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 169      cacttccggtcgttggagaagcccaaggaggatgacttttg 209
                ||||||||||| |||||||| || ||||||||||| |||||
Sbjct: 18385663 cacttccggtctttggagaaaccaaaggaggatgatttttg 18385703



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 277      gatgacccatcaaaaattcgtcttacatc 305
                ||||| |||||||||||||| ||||||||
Sbjct: 18385866 gatgatccatcaaaaattcgccttacatc 18385894
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 265      cagcttggtgttgatgacccatcaaaaattcgtcttacatcacataattgttactctcaa 324
                ||||||||||| ||||| ||| | ||||||||||| ||||| ||||| || || || || 
Sbjct: 20650559 cagcttggtgtggatgatccagcgaaaattcgtctaacatcccataactgctattcgcag 20650500

                                 
Query: 325      cagcctaagcctcaacc 341
                |||||||| || |||||
Sbjct: 20650499 cagcctaaaccgcaacc 20650483
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>dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M22, full
            insert sequence
          Length = 3975

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                        
Query: 376  atgctgattcattataatcagacttctgatattctgtactatgaagtattggatataccc 435
            ||||| ||||||||||||||||| || || ||  |||| ||||| || |||||||| || 
Sbjct: 2617 atgctcattcattataatcagacatcagacatattgtattatgaggtgttggatattcca 2676

                     
Query: 436  ctgccagaa 444
            |||||||||
Sbjct: 2677 ctgccagaa 2685



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                        
Query: 265  cagcttggtgttgatgacccatcaaaaattcgtcttacatcacataattgttactctcaa 324
            ||||||||||| ||||| ||| | ||||||||||| ||||| ||||| || || || || 
Sbjct: 2506 cagcttggtgtggatgatccagcgaaaattcgtctaacatcccataactgctattcgcag 2565

                             
Query: 325  cagcctaagcctcaacc 341
            |||||||| || |||||
Sbjct: 2566 cagcctaaaccgcaacc 2582
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 265      cagcttggtgttgatgacccatcaaaaattcgtcttacatcacataattgttactctcaa 324
                ||||||||||| ||||| ||| | ||||||||||| ||||| ||||| || || || || 
Sbjct: 20960794 cagcttggtgtggatgatccagcgaaaattcgtctaacatcccataactgctattcgcag 20960735

                                 
Query: 325      cagcctaagcctcaacc 341
                |||||||| || |||||
Sbjct: 20960734 cagcctaaaccgcaacc 20960718
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 169      cacttccggtcgttggagaagcccaaggaggatgacttttg 209
                ||||||||||| |||||||| || ||||||||||| |||||
Sbjct: 18311889 cacttccggtctttggagaaaccaaaggaggatgatttttg 18311929



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 277      gatgacccatcaaaaattcgtcttacatc 305
                ||||| |||||||||||||| ||||||||
Sbjct: 18312092 gatgatccatcaaaaattcgccttacatc 18312120
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>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 169   cacttccggtcgttggagaagcccaaggaggatgacttttg 209
             ||||||||||| |||||||| || ||||||||||| |||||
Sbjct: 37562 cacttccggtctttggagaaaccaaaggaggatgatttttg 37602



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 277   gatgacccatcaaaaattcgtcttacatc 305
             ||||| |||||||||||||| ||||||||
Sbjct: 37765 gatgatccatcaaaaattcgccttacatc 37793
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>gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HBa0323E19, complete
             sequence
          Length = 141216

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 100/125 (80%)
 Strand = Plus / Plus

                                                                         
Query: 238   gatgaagttgtagaaaaagtcgctcaacagcttggtgttgatgacccatcaaaaattcgt 297
             ||||||||||| |||| ||| ||||| |  |||||  | ||||| ||||| |||||  | 
Sbjct: 42037 gatgaagttgtggaaagagtagctcagcgacttggcttggatgatccatccaaaataagg 42096

                                                                         
Query: 298   cttacatcacataattgttactctcaacagcctaagcctcaaccaattaagtacagaggc 357
             || ||| | ||||||||||||||||| || ||||| || || || || ||||||||||| 
Sbjct: 42097 ctcacaccccataattgttactctcagcaacctaaaccccagccgatcaagtacagaggt 42156

                  
Query: 358   gttga 362
             |||||
Sbjct: 42157 gttga 42161



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 394   cagacttctgatattctgtactatgaagtattgga 428
             ||||| ||||||||| |||||||||||||| ||||
Sbjct: 42269 cagacatctgatattttgtactatgaagtactgga 42303
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>gb|AY104649.1| Zea mays PCO133877 mRNA sequence
          Length = 927

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 373 gatatgctgattcattataatcagacttctgatat 407
           ||||||||  | |||||||||||||||||||||||
Sbjct: 407 gatatgcttgtncattataatcagacttctgatat 441
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>ref|NM_112024.3| Arabidopsis thaliana cysteine-type endopeptidase/ double-stranded DNA
            binding / ubiquitin thiolesterase/ ubiquitin-specific
            protease AT3G11910 mRNA, complete cds
          Length = 3813

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 140/179 (78%)
 Strand = Plus / Plus

                                                                        
Query: 266  agcttggtgttgatgacccatcaaaaattcgtcttacatcacataattgttactctcaac 325
            |||||||  |||| || ||||||||| || | |||||||| || ||||| |||||||| |
Sbjct: 2602 agcttggccttgacgatccatcaaaacttaggcttacatctcacaattgctactctcagc 2661

                                                                        
Query: 326  agcctaagcctcaaccaattaagtacagaggcgttgaacgtttgctagatatgctgattc 385
            | || |||||||| ||||| || ||| | || || || | | |   ||||||| |  |||
Sbjct: 2662 aacccaagcctcagccaatcaaataccgtggagtagatcatctttcagatatgttagttc 2721

                                                                       
Query: 386  attataatcagacttctgatattctgtactatgaagtattggatatacccctgccagaa 444
            | ||||||||||| ||||| ||  |||| |||||||| |||||||| || || ||||||
Sbjct: 2722 actataatcagacgtctgacatattgtattatgaagttttggatattcctcttccagaa 2780
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>gb|AY064010.1| Arabidopsis thaliana At3g11910 mRNA sequence
          Length = 4231

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 140/179 (78%)
 Strand = Plus / Plus

                                                                        
Query: 266  agcttggtgttgatgacccatcaaaaattcgtcttacatcacataattgttactctcaac 325
            |||||||  |||| || ||||||||| || | |||||||| || ||||| |||||||| |
Sbjct: 3094 agcttggccttgacgatccatcaaaacttaggcttacatctcacaattgctactctcagc 3153

                                                                        
Query: 326  agcctaagcctcaaccaattaagtacagaggcgttgaacgtttgctagatatgctgattc 385
            | || |||||||| ||||| || ||| | || || || | | |   ||||||| |  |||
Sbjct: 3154 aacccaagcctcagccaatcaaataccgtggagtagatcatctttcagatatgttagttc 3213

                                                                       
Query: 386  attataatcagacttctgatattctgtactatgaagtattggatatacccctgccagaa 444
            | ||||||||||| ||||| ||  |||| |||||||| |||||||| || || ||||||
Sbjct: 3214 actataatcagacgtctgacatattgtattatgaagttttggatattcctcttccagaa 3272
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>gb|BT002760.1| Arabidopsis thaliana clone C105177 putative ubiquitin
            carboxyl-terminal hydrolase (At3g11910) mRNA, complete
            cds
          Length = 3379

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 140/179 (78%)
 Strand = Plus / Plus

                                                                        
Query: 266  agcttggtgttgatgacccatcaaaaattcgtcttacatcacataattgttactctcaac 325
            |||||||  |||| || ||||||||| || | |||||||| || ||||| |||||||| |
Sbjct: 2507 agcttggccttgacgatccatcaaaacttaggcttacatctcacaattgctactctcagc 2566

                                                                        
Query: 326  agcctaagcctcaaccaattaagtacagaggcgttgaacgtttgctagatatgctgattc 385
            | || |||||||| ||||| || ||| | || || || | | |   ||||||| |  |||
Sbjct: 2567 aacccaagcctcagccaatcaaataccgtggagtagatcatctttcagatatgttagttc 2626

                                                                       
Query: 386  attataatcagacttctgatattctgtactatgaagtattggatatacccctgccagaa 444
            | ||||||||||| ||||| ||  |||| |||||||| |||||||| || || ||||||
Sbjct: 2627 actataatcagacgtctgacatattgtattatgaagttttggatattcctcttccagaa 2685
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>gb|AC161802.7| Mus musculus chromosome 5, clone RP23-477G6, complete sequence
          Length = 176484

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 472   acatatcatcatgccaccaaggatga 497
             ||||||||| ||||||||||||||||
Sbjct: 60035 acatatcataatgccaccaaggatga 60010
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 462     attaaaagttacatatcatca 482
               |||||||||||||||||||||
Sbjct: 1456433 attaaaagttacatatcatca 1456413
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>emb|BX470072.8| Zebrafish DNA sequence from clone DKEY-163I6 in linkage group 21,
             complete sequence
          Length = 211164

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 65    atattgtttgttttcaaaaat 85
             |||||||||||||||||||||
Sbjct: 97203 atattgtttgttttcaaaaat 97223
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>gb|AC078881.5| Homo sapiens BAC clone RP11-130F10 from 4, complete sequence
          Length = 171068

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     agctggaagatggtgatattg 70
              |||||||||||||||||||||
Sbjct: 123609 agctggaagatggtgatattg 123629
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>gb|DQ335213.1| Escherichia coli strain O1:K1 fosmid 009-H10, complete sequence
          Length = 42287

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 462   attaaaagttacatatcatca 482
             |||||||||||||||||||||
Sbjct: 13035 attaaaagttacatatcatca 13015
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>gb|AF020626.1|AF020626 Vibrio sp. 172 plasmid pTM172 origin of replication region
          Length = 1785

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 253  aaagtcgctcaacagcttggt 273
            |||||||||||||||||||||
Sbjct: 1242 aaagtcgctcaacagcttggt 1262
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>gb|AC116759.13| Mus musculus chromosome 18, clone RP23-383E12, complete sequence
          Length = 203049

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     attgataatagaattatatt 38
              ||||||||||||||||||||
Sbjct: 201172 attgataatagaattatatt 201153
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>ref|NM_196055.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0073L01.15), mRNA
          Length = 5883

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  gctcaacagcttggtgttga 278
            ||||||||||||||||||||
Sbjct: 1180 gctcaacagcttggtgttga 1199
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>ref|XM_476932.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1164

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  tccccaaagccagatacttc 104
           ||||||||||||||||||||
Sbjct: 799 tccccaaagccagatacttc 780
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>gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, complete sequence
          Length = 206108

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    attgataatagaattatatt 38
             ||||||||||||||||||||
Sbjct: 66196 attgataatagaattatatt 66177
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>gb|U80032.1| Caenorhabditis elegans cosmid C32E12, complete sequence
          Length = 45389

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    atattgtttgttttcaaaaa 84
             ||||||||||||||||||||
Sbjct: 27987 atattgtttgttttcaaaaa 27968
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>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaaatccccaaagccaga 98
              ||||||||||||||||||||
Sbjct: 230666 caaaaatccccaaagccaga 230685
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>gb|AC140782.4| Mus musculus BAC clone RP24-417N13 from chromosome 7, complete sequence
          Length = 196282

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    caaaaatccccaaagccaga 98
             ||||||||||||||||||||
Sbjct: 32660 caaaaatccccaaagccaga 32679
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>gb|AC127318.4| Mus musculus BAC clone RP23-228J12 from chromosome 9, complete sequence
          Length = 168789

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    tggtgatattgtttgttttc 79
             ||||||||||||||||||||
Sbjct: 82155 tggtgatattgtttgttttc 82174
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>gb|AC127414.4| Mus musculus BAC clone RP23-246P24 from chromosome 7, complete
            sequence
          Length = 218222

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   caaaaatccccaaagccaga 98
            ||||||||||||||||||||
Sbjct: 4838 caaaaatccccaaagccaga 4857
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>ref|XM_739708.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000933.01.0)
            partial mRNA
          Length = 4008

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 371  tagatatgctgattcattat 390
            ||||||||||||||||||||
Sbjct: 3588 tagatatgctgattcattat 3569
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 263     aacagcttggtgttgatgac 282
               ||||||||||||||||||||
Sbjct: 3838263 aacagcttggtgttgatgac 3838282
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>emb|BX000471.7| Zebrafish DNA sequence from clone DKEY-11C8 in linkage group 20
             Contains the gene for a novel protein similar to human
             transmembrane protein SHREW1 (SHREW1) and three CpG
             islands, complete sequence
          Length = 227892

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 59    atggtgatattgtttgttttcaaa 82
             ||||||||||||| ||||||||||
Sbjct: 68638 atggtgatattgtatgttttcaaa 68615
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>emb|BX511068.5| Zebrafish DNA sequence from clone RP71-56H12 in linkage group 8,
             complete sequence
          Length = 108031

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    atggtgatattgtttgttttcaaa 82
             ||||||||||||| ||||||||||
Sbjct: 22953 atggtgatattgtatgttttcaaa 22976
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>gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 genomic sequence, complete
              sequence
          Length = 179199

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    gctcaacagcttggtgttga 278
              ||||||||||||||||||||
Sbjct: 128013 gctcaacagcttggtgttga 127994
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 259      gctcaacagcttggtgttga 278
                ||||||||||||||||||||
Sbjct: 10797245 gctcaacagcttggtgttga 10797226
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>gb|U18530.1|SCE9871 Saccharomyces cerevisiae chromosome V cosmids 9871, 8199, 9867, 9495
            and lambda clones 6693 and 5898
          Length = 62643

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   tggaagatggtgatattgtt 72
            ||||||||||||||||||||
Sbjct: 2276 tggaagatggtgatattgtt 2295
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>emb|BX248116.8| Zebrafish DNA sequence from clone CH211-245G15 in linkage group 9,
              complete sequence
          Length = 161065

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 500    tgtctgttcacagtataaga 519
              ||||||||||||||||||||
Sbjct: 130098 tgtctgttcacagtataaga 130117
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>dbj|AK111813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130D16, full
            insert sequence
          Length = 2792

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 85   tccccaaagccagatacttc 104
            ||||||||||||||||||||
Sbjct: 2144 tccccaaagccagatacttc 2125
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>dbj|AK111777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077D02, full
            insert sequence
          Length = 1779

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 85   tccccaaagccagatacttc 104
            ||||||||||||||||||||
Sbjct: 1011 tccccaaagccagatacttc 992
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>emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 in linkage group 22,
              complete sequence
          Length = 237985

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    acgtacgatgaagttgtaga 251
              ||||||||||||||||||||
Sbjct: 129983 acgtacgatgaagttgtaga 130002
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>emb|AL110500.1|CEY87G2A Caenorhabditis elegans YAC Y87G2A, complete sequence
          Length = 123091

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   agcctaagcctcaaccaatt 345
             ||||||||||||||||||||
Sbjct: 66628 agcctaagcctcaaccaatt 66647
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>gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, complete sequence
          Length = 154308

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    tgatattctgtactatgaag 421
              ||||||||||||||||||||
Sbjct: 126881 tgatattctgtactatgaag 126900
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>gb|DQ331806.1| Synthetic construct Saccharomyces cerevisiae clone FLH202870.01X SPF1
            gene, complete sequence
          Length = 3648

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   tggaagatggtgatattgtt 72
            ||||||||||||||||||||
Sbjct: 1613 tggaagatggtgatattgtt 1632
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 259      gctcaacagcttggtgttga 278
                ||||||||||||||||||||
Sbjct: 10803284 gctcaacagcttggtgttga 10803265
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>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546,
             complete sequence
          Length = 107979

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                         
Query: 161   aggttgtccacttccggtcgttggagaagcccaaggaggatgacttttgcctagagatgt 220
             ||||||||||||| || ||||| || || || || || |||||||| ||||| |||||||
Sbjct: 79168 aggttgtccactttcgttcgttagataaacctaaagaagatgacttctgcctggagatgt 79109
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>emb|AL683854.20| Mouse DNA sequence from clone RP23-237K13 on chromosome 4, complete
              sequence
          Length = 234724

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 392    atcagacttctgatattctg 411
              ||||||||||||||||||||
Sbjct: 196213 atcagacttctgatattctg 196194


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,692,888
Number of Sequences: 3902068
Number of extensions: 5692888
Number of successful extensions: 123972
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123604
Number of HSP's gapped (non-prelim): 367
length of query: 542
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 519
effective length of database: 17,143,297,704
effective search space: 8897371508376
effective search space used: 8897371508376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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