ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags12c18 |
|---|---|
| Clone Library Name | barley_pub |
>EXOC7_MOUSE (O35250) Exocyst complex component 7 (Exocyst complex component| Exo70) Length = 697 Score = 35.0 bits (79), Expect = 0.15 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Frame = +2 Query: 176 YIVLMSKAHTSMQNSLYSQHKEKLRELIDYMIDYLNNL---LLRKSELCSDPSLRYLFLL 346 Y + + TS + YS K R L Y+ L NL LL KS++ DP+L +FL Sbjct: 482 YNIPLDPRETSSSATSYSSEFSK-RLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLH 540 Query: 347 NNSYFIMQMVSEVSL 391 NN +I++ + + L Sbjct: 541 NNYNYILKSLEKSEL 555
>EXOC7_HUMAN (Q9UPT5) Exocyst complex component 7 (Exocyst complex component| Exo70) Length = 735 Score = 35.0 bits (79), Expect = 0.15 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = +2 Query: 185 LMSKAHTSMQNSLYSQHKEKLRELIDYMIDYLNNL---LLRKSELCSDPSLRYLFLLNNS 355 +++ TS + YS K R L Y+ L NL LL KS++ DP+L +FL NN Sbjct: 523 MLASQETSSSATSYSSEFSK-RLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNY 581 Query: 356 YFIMQMVSEVSL 391 +I++ + + L Sbjct: 582 NYILKSLEKSEL 593
>EXOC7_RAT (O54922) Exocyst complex component 7 (Exocyst complex component| Exo70) (rExo70) Length = 653 Score = 33.9 bits (76), Expect = 0.33 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = +2 Query: 185 LMSKAHTSMQNSLYSQHKEKLRELIDYMIDYLNNL---LLRKSELCSDPSLRYLFLLNNS 355 +++ TS + Y+ K R L Y+ L NL LL KS++ DP+L +FL NN Sbjct: 441 MLASQETSSSATSYNSEFSK-RLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNY 499 Query: 356 YFIMQMVSEVSL 391 +I++ + + L Sbjct: 500 NYILKSLEKSEL 511
>UL07_HHV7J (P52458) Protein U75| Length = 256 Score = 32.0 bits (71), Expect = 1.2 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 4/102 (3%) Frame = +2 Query: 41 NKLIESVCQKMVQVRRTLMKDDDSWVAEILEGGGEV----HKNTRLMVEYIVLMSKAHTS 208 +KL+ CQK++ + R + DD ++L+ + +++ + + L K+H + Sbjct: 152 SKLLACTCQKLISILRYIFYDDKQ--QDVLDKVPPIIQLYYESKTANIHMLNLFFKSHDN 209 Query: 209 MQNSLYSQHKEKLRELIDYMIDYLNNLLLRKSELCSDPSLRY 334 S + +L++ Y+ID+L KS +C S Y Sbjct: 210 DDTCTLSLNTRRLQDDSKYLIDFL------KSAICDAFSKEY 245
>RS6_IDILO (Q5QY01) 30S ribosomal protein S6| Length = 116 Score = 31.6 bits (70), Expect = 1.6 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Frame = +2 Query: 125 ILEGGGEVHK----NTRLMVEYIVLMSKAHTSMQN-SLYSQHKEKLRELIDYMIDYLNNL 289 I +GGG++H+ R + I + KAH + N ++ E+L Y L N+ Sbjct: 29 IKQGGGQIHRLEDWGRRQLAYPINKLHKAHYVLLNIEASAEVVEELETAFRYNDAVLRNM 88 Query: 290 LLRKSELCSDPS 325 ++RK E ++PS Sbjct: 89 IMRKKESITEPS 100
>TORD_VIBVY (Q7MJ58) Chaperone protein torD| Length = 215 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Frame = +2 Query: 230 QHKEKLRELIDY---MIDYLNNLLLRKSELCSDPSLRYLFLLNNSYFIMQMV 376 Q ++L E D+ M+D+L NL++R +EL D + F+ N+ FI +M+ Sbjct: 125 QVNQQLNEPADHLAIMLDFLGNLIIRSNELEQDRHMEEAFIEQNA-FIQEML 175
>MUTS_IDILO (Q5QUB6) DNA mismatch repair protein mutS| Length = 871 Score = 31.2 bits (69), Expect = 2.1 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 8/145 (5%) Frame = +2 Query: 68 KMVQVRRTLMKDDDSWVAEILEGGGEV-HKNTRLMVEYIVLMSKAHTSMQNSLYSQHKEK 244 K+ +VR +L S++ +I+E EV T+ ++E L+ + + Y + ++ Sbjct: 382 KIPEVRASLSHRSLSYLHDIIEPFPEVVDLLTKAVIEQPPLLIRDGGVIAEG-YDKELDE 440 Query: 245 LRELIDYMIDYLNNLLLRKSELCSDPSLRYLFLLNNSYFIMQMVSEVSLQKNPDQLCGYQ 424 LR+L DYL L R+ E +L+ + + YFI VS S + PD YQ Sbjct: 441 LRDLATGATDYLKQLEQRERERSGIATLKVGYNRVHGYFI--EVSRQSSEAVPDD---YQ 495 Query: 425 R-------EIKLTPECGKYMDSYLD 478 R E + PE ++ D L+ Sbjct: 496 RRQTLKNTERYIIPELKEHEDKVLN 520
>CV106_HUMAN (Q6P0N0) Protein C14orf106 (P243)| Length = 1132 Score = 30.8 bits (68), Expect = 2.8 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 11/141 (7%) Frame = +2 Query: 26 LDREGNKLIES-------VCQKMVQVRRTLMKDDDSWVAEILEGGGEVHKNTRLMVEYIV 184 L+ + NK ES +C Q + TL DD I GGG+ N L+ + Sbjct: 531 LELKSNKHSESPGATELNMCHSNCQNKPTLRFPDDQVNNTIQNGGGDDLSNQELIGKKEY 590 Query: 185 LMS----KAHTSMQNSLYSQHKEKLRELIDYMIDYLNNLLLRKSELCSDPSLRYLFLLNN 352 MS K + K++ E +D ID +L + + SD +Y+ + Sbjct: 591 KMSSKKLKIGERTNERIIKSQKQETTEELDVSID----ILTSREQFFSDEERKYMAINQK 646 Query: 353 SYFIMQMVSEVSLQKNPDQLC 415 +I +V+ + +K +Q C Sbjct: 647 KAYI--LVTPLKSRKVIEQRC 665
>REV1_YEAST (P12689) DNA repair protein REV1 (EC 2.7.7.-)| Length = 985 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/68 (25%), Positives = 33/68 (48%) Frame = +2 Query: 113 WVAEILEGGGEVHKNTRLMVEYIVLMSKAHTSMQNSLYSQHKEKLRELIDYMIDYLNNLL 292 WVAE L GG K+ +L V+Y++ + ++ +++ +L+NL+ Sbjct: 893 WVAETLGDGGPHEKDVKLFVKYLIKLCDSNRV------------------HLVLHLSNLI 934 Query: 293 LRKSELCS 316 R+ LC+ Sbjct: 935 SRELNLCA 942
>BAG5_HUMAN (Q9UL15) BAG family molecular chaperone regulator 5| (BCL2-associated athanogene 5) (BAG-5) Length = 447 Score = 30.4 bits (67), Expect = 3.6 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = +2 Query: 143 EVHKNTRLMVEYIVLMSKAHTSMQNSLYSQHKE-KLRELIDYMIDYLNNLLLRKSELCSD 319 EV ++ +++Y+ L +A T+ L H K+ +++ M + N LL ++ Sbjct: 244 EVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQN----- 298 Query: 320 PSLRYLFLLNNSYFIMQMVSEVSLQKNP 403 PS YL ++ + EVSL+KNP Sbjct: 299 PSELYLSSKTELQGLIGQLDEVSLEKNP 326
>SAMD9_HUMAN (Q5K651) Sterile alpha motif domain-containing protein 9| Length = 1589 Score = 30.0 bits (66), Expect = 4.7 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 4/46 (8%) Frame = +2 Query: 419 YQREIKLTPECG----KYMDSYLDVSWGNVLSFMPKSNFHGPLRRW 544 Y++ I +T +C K++D ++ W VL F P+SN +G ++ + Sbjct: 410 YEQYILVTNKCHPDQTKHLDFLKEIKWFAVLEFDPESNINGVVKAY 455
>SET3_SCHPO (Q10362) SET domain-containing protein 3| Length = 859 Score = 30.0 bits (66), Expect = 4.7 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = -2 Query: 314 STTLIFAEANCSDNRSCNL*VLEAFLCADYIKSSASKYVLCSSKL-CTPPSTGCSCEPRL 138 ST L F E D ++C + ++ A S+A++ + +L TP ST + P Sbjct: 369 STFLSFNECASQDKKNCVFSRVTKYIKAARRASTANRVSVAKDRLSLTPSSTPSTPSPAE 428 Query: 137 LLPESRRPTS 108 LP+ PTS Sbjct: 429 SLPQPSNPTS 438
>TORD_VIBVU (Q8DAQ4) Chaperone protein torD| Length = 215 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +2 Query: 230 QHKEKLRELIDY---MIDYLNNLLLRKSELCSDPSLRYLFLLNNSYFIMQMV 376 Q ++L E D+ M+D+L NL++R +E D + F+ N+ FI +M+ Sbjct: 125 QVNQQLNEPADHLAIMLDFLGNLIIRSNEFEQDRHMEEAFIEQNA-FIQEML 175
>FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-containing| protein) Length = 1104 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +3 Query: 30 IEKGTS*LSPYAKRWCR*GGHS*RTMTRGSPRFWKEEARF 149 + KGT LSPYA H +T+++ S W E A F Sbjct: 812 LRKGTKHLSPYATLTVGDSSHKTKTISQTSAPVWDESASF 851
>DPOL_MIMIV (Q5UQR0) DNA polymerase (EC 2.7.7.7) [Contains: Mimv polB intein]| Length = 1740 Score = 29.3 bits (64), Expect = 8.0 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 13/99 (13%) Frame = +2 Query: 143 EVHKNTRLMVEYIVLMSKAHTSMQNSLYSQ-HKEKLRELIDYMID--YLNNLLLRKSEL- 310 E KN L + + H + N + + +K+R++ Y + L NLLL K E+ Sbjct: 574 ETIKNPLLGISWTFAKDDMHHTKINEYFEEGDPKKIRQIAKYCLKDCKLVNLLLAKLEII 633 Query: 311 ---------CSDPSLRYLFLLNNSYFIMQMVSEVSLQKN 400 C P L YLFL I +VS+ +KN Sbjct: 634 VNSVGMAKVCHVP-LSYLFLRGQGVKIFSLVSKKCREKN 671
>Y2783_VIBVY (P67696) UPF0289 protein VV2783| Length = 246 Score = 29.3 bits (64), Expect = 8.0 Identities = 26/104 (25%), Positives = 49/104 (47%) Frame = +2 Query: 146 VHKNTRLMVEYIVLMSKAHTSMQNSLYSQHKEKLRELIDYMIDYLNNLLLRKSELCSDPS 325 +++ TR+ + L+ +AHT+ S QH+ R + D +I+ + L KSEL D Sbjct: 10 LNEKTRIYLRVESLLRQAHTAASFSEPHQHQLFFRSIFD-LIEIFEQIQL-KSELAKD-- 65 Query: 326 LRYLFLLNNSYFIMQMVSEVSLQKNPDQLCGYQREIKLTPECGK 457 + LL S+ ++ V + +L+ D+ + P G+ Sbjct: 66 IEKQRLLYRSWLNVEGVDQATLRSLLDEADRTHAALMQAPRFGQ 109
>Y1620_VIBVU (P67695) UPF0289 protein VV1_1620| Length = 246 Score = 29.3 bits (64), Expect = 8.0 Identities = 26/104 (25%), Positives = 49/104 (47%) Frame = +2 Query: 146 VHKNTRLMVEYIVLMSKAHTSMQNSLYSQHKEKLRELIDYMIDYLNNLLLRKSELCSDPS 325 +++ TR+ + L+ +AHT+ S QH+ R + D +I+ + L KSEL D Sbjct: 10 LNEKTRIYLRVESLLRQAHTAASFSEPHQHQLFFRSIFD-LIEIFEQIQL-KSELAKD-- 65 Query: 326 LRYLFLLNNSYFIMQMVSEVSLQKNPDQLCGYQREIKLTPECGK 457 + LL S+ ++ V + +L+ D+ + P G+ Sbjct: 66 IEKQRLLYRSWLNVEGVDQATLRSLLDEADRTHAALMQAPRFGQ 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,233,457 Number of Sequences: 219361 Number of extensions: 1707728 Number of successful extensions: 4591 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4449 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4585 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
