>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2365

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
 Frame = +3

Query: 246  HRGSPKFTD*PRHLEVDS----GDRSQAAPPQESSSHYPRSRQVPPCPSGRGT------- 392
            HR +P+ +  PRH + D      D S A    +S  H P     P C   R         
Sbjct: 1067 HRDAPRASSPPRHTQFDPFPFLPDTSDAEHQCQSPQHEPLQLPAPVCIGYRDAPRASSPP 1126

Query: 393  --ATTGMKTLQMLPGWQTEHGILSLFPTNHCPH 485
              A       Q LP   TE  + S+   + CPH
Sbjct: 1127 RQAPEPSLLFQDLPRASTESLVPSMDSLHECPH 1159

>GAL7_STRLI (P13212) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)|
           (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 354

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 300 GDRSQAAPPQESSSHYPRSRQVPPCPSGRGTA 395
           GD + +    +  +++P + Q P CPSGRGTA
Sbjct: 49  GDSAPSRLAPQGRTYHPPADQCPLCPSGRGTA 80

>RNA14_YEAST (P25298) mRNA 3'-end processing protein RNA14|
          Length = 677

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 449 YTKLISHKPLPTLTAKPSALYPSRSDSETITNVF 550
           YT L+++   P+LT K S  Y   +DSE+++N F
Sbjct: 339 YTALLANPDSPSLTFKLSECYELDNDSESVSNCF 372

>APBA2_MOUSE (P98084) Amyloid beta A4 precursor protein-binding family A member|
           2 (Neuron-specific X11L protein) (Neuronal
           Munc18-1-interacting protein 2) (Mint-2) (Adapter
           protein X11beta)
          Length = 750

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = +3

Query: 276 PRHL-EVDSGDRSQAAPPQES------SSHYPRSRQVPPCPSGRGTATTGMKTLQMLP 428
           P H+ E+D GD ++A PP ++          P+S  +PP     G    G+KT    P
Sbjct: 251 PEHMPELDPGDSTEACPPSDTGHGPGRQEARPKSLNLPPEVKHPGDLQRGLKTKTRTP 308

>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)|
          Length = 1201

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 25/86 (29%), Positives = 32/86 (37%)
 Frame = +3

Query: 297  SGDRSQAAPPQESSSHYPRSRQVPPCPSGRGTATTGMKTLQMLPGWQTEHGILSLFPTNH 476
            +G  S  +PP+E+ SH        P  S   T +  MK           H   S   T  
Sbjct: 969  TGALSTGSPPRENPSH--------PTASALSTGSPPMKN--------PSHPTASALSTGS 1012

Query: 477  CPH*LPSHPHYTLQGLTQRPSRMSSH 554
             P   PSHP  +   +   PSR  SH
Sbjct: 1013 PPMKNPSHPTASTLSMGLPPSRTPSH 1038

>Y1145_VIBPA (Q87QK4) UPF0225 protein VP1145|
          Length = 167

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 390 CRAQKDKEALAESVGSESCSLEAEQPANGHH 298
           C A++ +E +A+S+ S+ C LE  +   G H
Sbjct: 57  CNAEEQREGIAQSIDSDWCKLEVVKAEAGSH 87

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 4 (Hyperpolarization-activated
           cation channel 4) (HAC-4)
          Length = 1175

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 24/69 (34%), Positives = 29/69 (42%)
 Frame = +3

Query: 276 PRHLEVDSGDRSQAAPPQESSSHYPRSRQVPPCPSGRGTATTGMKTLQMLPGWQTEHGIL 455
           PRHL      R Q+  P   S   P S      PS   T ++    +Q LPG  T  G+ 
Sbjct: 821 PRHLR-----RLQSLAPSAPSPASPASS-----PSQPDTPSSASLHVQPLPGCSTPAGLG 870

Query: 456 SLFPTNHCP 482
           SL PT   P
Sbjct: 871 SLLPTAGSP 879

>GYS2_RAT (P17625) Glycogen [starch] synthase, liver (EC 2.4.1.11)|
          Length = 703

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 318 APPQESSSHYPRSRQVPPCPSGRGTAT 398
           +PP      YPR   VPP PSG  T++
Sbjct: 626 SPPTTDGFKYPRPSSVPPSPSGSQTSS 652

>CTL2_MOUSE (Q8BY89) Choline transporter-like protein 2 (Solute carrier family|
           44 member 2)
          Length = 704

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
 Frame = -3

Query: 246 VFLSCTRTGTYE--EGMQCEASTPVCSNQGVQLLGSVYMCCNKLTATCTKV-----NGYR 88
           VFLS + T  Y+  +   C      C+ +   L      C    TA C        + Y 
Sbjct: 381 VFLSTSNTAVYKVVDDTACPLLRKTCNPETFPLRNESLQCP---TARCQFAFYGGESTYH 437

Query: 87  LKLLTLLAEYVYMYYFLANPVLAIFQIS 4
             LL L     +M+++LAN VLA+ Q++
Sbjct: 438 RALLGLQIFNAFMFFWLANFVLALGQVT 465

>VE2_BPV5 (Q8BDG4) Regulatory protein E2|
          Length = 409

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 228 GCKTKRHRGSPKFTD*PRHLEVDSGDRSQAAPPQES-SSHYPRSRQVPPCPSGRGT 392
           GC   RHR  P      + + V S   S    P  S SS + +SR  PP P    T
Sbjct: 246 GCHRNRHRVHPYILSGGQRILVTSSSSSTVQGPLSSGSSQHSQSRGRPPSPDSTET 301

>PSD1_CAEEL (Q18115) 26S proteasome non-ATPase regulatory subunit 1 (26S|
           proteasome regulatory subunit rpn-2)
          Length = 965

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 156 LLGSVYMCCNKLTATCTKVNGYRLKLLTLLAE 61
           LL    + C +   TC KVNG+R +LL  + E
Sbjct: 667 LLSLALIMCQQTDYTCPKVNGFRKQLLKKIGE 698


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,048,506
Number of Sequences: 219361
Number of extensions: 1795734
Number of successful extensions: 4856
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4851
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)