>PHF3_HUMAN (Q92576) PHD finger protein 3|
          Length = 2039

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +3

Query: 222  PDYLIRENPKRAAVMFMIKANLAMYNEHTKARMLEEQRDFKHQLKTKGRVTYELEVDEDD 401
            PD+LIR +P+  A    + A     N HT   + +EQR+ + +  TK     E+E++ D 
Sbjct: 1007 PDHLIRMSPEELASK-ELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDA 1065

Query: 402  PRFKDECT--TSSAGAGRRRHRPGVMKKQDGQIKRLN 506
            P  + E         A +   +P   +KQ  ++  ++
Sbjct: 1066 PMKEQEAAMEIQEPAANKSLEKPEGSEKQKEEVDSMS 1102

>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
            helicase ATRX) (X-linked nuclear protein)
            (Heterochromatin protein 2) (HP1 alpha-interacting
            protein) (HP1-BP38 protein)
          Length = 2476

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
 Frame = +3

Query: 192  YKDEPVDLEVPDYLIRENPK-RAAVMFMIKANLAMYNEHTKARMLEEQRDFK-----HQL 353
            +++  V  EV +    + P+ R+A    ++ N   Y +  K R ++ Q D       H  
Sbjct: 1371 FQESGVSEEVSESEDEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSHSE 1430

Query: 354  KTKGRVTYELEVDEDDPRFKDECTTSSAGAGRRRHR 461
            + K     E E DED+    +   + S G GR++ R
Sbjct: 1431 EDKKEGDEEDEEDEDEDEEDENDDSKSPGKGRKKIR 1466

>RFBB_MYXXA (Q50863) O-antigen export system ATP-binding protein rfbB|
          Length = 437

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = +3

Query: 264 MFMIKANLAMYNEHTKARMLEEQRDFKHQLKTKGRVTYELEVDEDDPRFKDECTTSSAGA 443
           + +I   LA+ +EH   + L +  DFK Q KT   VT+EL   E   R+ D       G 
Sbjct: 177 ILIIDEILAVGDEHFSKKSLAKMMDFKRQGKTIVLVTHELGTVE---RWCDLAAWIDGGY 233

Query: 444 GRRRHRP 464
            RR  +P
Sbjct: 234 VRRVGKP 240

>GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein p12; Core|
           protein p15; Core shell protein p30; Nucleoprotein p10]
          Length = 536

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 277 RPTWPCTTSTPRHGCSRSRETLSTN*KPRAESPTSSRLMRTIRDLKMNAPPALLEQ 444
           RP W   T+  R      R+ L    K   + PT+   +RTI   K  +P A +E+
Sbjct: 325 RPDWDYETAPGRESLRIYRQALLAGLKGAGKRPTNLAKVRTITQGKDESPAAFMER 380

>RPOL_KLULA (P05472) Probable DNA-directed RNA polymerase (EC 2.7.7.6) (Killer|
           plasmid PGKL2 protein 6)
          Length = 982

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 485 RTDQEAKLNYYFI*CKSYLLGLSRQVFINN--YSI 583
           R D+E ++  YF  C SY+  L R + I N  YSI
Sbjct: 671 RYDKEMEIGQYFKICLSYMRSLGRDILIKNDKYSI 705


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,605,201
Number of Sequences: 219361
Number of extensions: 1662071
Number of successful extensions: 4084
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4083
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)