ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags11m17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC131945.1| Homo sapiens BAC clone RP11-5K24 from 4, complete... 48 0.033
2gb|AC084386.2| Mus musculus BAC clone RP23-61O2 from 17, complet... 46 0.13
3gb|AC114912.3| Homo sapiens BAC clone RP11-552M14 from 4, comple... 46 0.13
4gb|AC155160.4| Mus musculus BAC clone RP24-510B6 from chromosome... 46 0.13
5dbj|AP006380.1| Lotus japonicus genomic DNA, chromosome 4, clone... 46 0.13
6gb|AY920295.1| Spathius brevicaudis voucher EAB-008 16S ribosoma... 44 0.52
7gb|AY920294.1| Spathius brevicaudis voucher EAB-007 16S ribosoma... 44 0.52
8gb|AY920293.1| Spathius brevicaudis voucher EAB-003 16S ribosoma... 44 0.52
9ref|XM_445281.1| Candida glabrata CBS138, CAGL0C02409g partial mRNA 44 0.52
10emb|CR380949.1| Candida glabrata strain CBS138 chromosome C comp... 44 0.52
11emb|CR626961.6| Zebrafish DNA sequence from clone CH211-160F13 i... 44 0.52
12emb|AL935322.13| Zebrafish DNA sequence from clone CH211-239B20,... 44 0.52
13ref|XM_380214.1| Gibberella zeae PH-1 chromosome 1 predicted pro... 42 2.1
14emb|Z83117.1|CEM04C7 Caenorhabditis elegans Cosmid M04C7, comple... 42 2.1
15gb|AC124562.4| Mus musculus BAC clone RP23-175B1 from 13, comple... 42 2.1
16gb|AC121808.2| Mus musculus BAC clone RP23-449M23 from 13, compl... 42 2.1
17emb|AL356278.8| Human DNA sequence from clone RP11-515J24 on chr... 42 2.1
18emb|CR762400.8| Zebrafish DNA sequence from clone DKEYP-46G10 in... 42 2.1
19emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chr... 42 2.1
20gb|AF362375.2| Dictyostelium discoideum histidine kinase DhkE (d... 42 2.1
21gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, comple... 42 2.1
22gb|AC013815.27| Homo sapiens chromosome 8, clone RP11-21J16, com... 42 2.1
23gb|AC009426.8|AC009426 Homo sapiens, clone RP11-45H19, complete ... 42 2.1
24gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome... 42 2.1
25emb|AJ438726.1|AMA438726 Agriopis marginaria mitochondrion nd1 g... 42 2.1
26gb|AY742293.1| Malus x domestica 14-3-3 family protein mRNA, com... 40 8.1
27gb|AE017263.1| Mesoplasma florum L1 complete genome 40 8.1
28ref|XM_460616.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 8.1
29gb|AC149069.2| X. tropicalis BAC clone ISB1-177L8 containing the... 40 8.1
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.1
31gb|AC115680.3| Dictyostelium discoideum chromosome 2 map 4915084... 40 8.1
32gb|AC152067.21| Medicago truncatula clone mth2-22g24, complete s... 40 8.1
33emb|CR450710.5| Zebrafish DNA sequence from clone CH211-197O6 in... 40 8.1
34emb|AL512410.14| Human DNA sequence from clone RP11-100E6 on chr... 40 8.1
35emb|AL357569.12| Human DNA sequence from clone RP13-137O14 on ch... 40 8.1
36emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in... 40 8.1
37emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 8.1
38emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 8.1
39emb|AL391711.1|ATT19L5 Arabidopsis thaliana DNA chromosome 5, BA... 40 8.1
40emb|AL138664.1|ATT5C2 Arabidopsis thaliana DNA chromosome 3, BAC... 40 8.1
41emb|AL035475.7|PFMAL4P2 Plasmodium falciparum MAL4P2 40 8.1
42emb|BX908767.8| Zebrafish DNA sequence from clone DKEY-66B12 in ... 40 8.1
43gb|AC153914.5| Mus musculus 10 BAC RP23-297H17 (Roswell Park Can... 40 8.1
44emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f2... 40 8.1
45gb|AC079073.7| Homo sapiens chromosome 11, clone RP11-72A10, com... 40 8.1
46emb|BX649495.8| Zebrafish DNA sequence from clone DKEY-177B16 in... 40 8.1
47gb|AC069444.17| Homo sapiens 3 BAC RP11-169N13 (Roswell Park Can... 40 8.1
48gb|AF364606.1| Homo sapiens orphan nuclear receptors (NR1I2) gen... 40 8.1
49dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 8.1
50dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 8.1
51gb|AC007112.6| Arabidopsis thaliana chromosome 2 clone F24C20 ma... 40 8.1
52gb|AC002387.3| Arabidopsis thaliana chromosome 2 clone F4L23 map... 40 8.1
53gb|AC092663.2| Homo sapiens BAC clone RP11-517B1 from 4, complet... 40 8.1
54gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 8.1
55emb|AL772329.14| Zebrafish DNA sequence from clone CH211-150D5 i... 40 8.1
56emb|BX511216.7| Zebrafish DNA sequence from clone DKEY-27F16 in ... 40 8.1
57emb|BX470204.13| Zebrafish DNA sequence from clone CH211-63C23 i... 40 8.1
58gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 8.1
59gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 8.1
60dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
61dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
62gb|AC105384.3| Homo sapiens BAC clone RP11-89B16 from 4, complet... 40 8.1
63dbj|AB125313.1| Nannochloris bacillaris NbrbcS1-2, GAMM1, Mut2 g... 40 8.1
64gb|AC144800.3| Mus musculus BAC clone RP24-257N2 from chromosome... 40 8.1
65gb|AC013469.8| Homo sapiens BAC clone RP11-463B12 from 2, comple... 40 8.1
66gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067... 40 8.1
67gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genom... 40 8.1
68dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 8.1
69dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 8.1
70emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, ... 40 8.1
71dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
72emb|AL844186.7| Zebrafish DNA sequence from clone DKEY-265G24, c... 40 8.1
73emb|CR388166.7| Zebrafish DNA sequence from clone DKEY-17E16 in ... 40 8.1
74emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 8.1
75dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.1
76emb|CT009687.10| Zebrafish DNA sequence from clone DKEY-5I20 in ... 40 8.1
77emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 8.1
78gb|AC153551.4| Mus musculus 10 BAC RP23-383A7 (Roswell Park Canc... 40 8.1
79gb|AC116860.15| Mus musculus chromosome 10, clone RP24-407B18, c... 40 8.1 
>gb|AC131945.1| Homo sapiens BAC clone RP11-5K24 from 4, complete sequence
          Length = 135190

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 501   ctaaattaaattattattttattt 524
             ||||||||||||||||||||||||
Sbjct: 12763 ctaaattaaattattattttattt 12786
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>gb|AC084386.2| Mus musculus BAC clone RP23-61O2 from 17, complete sequence
          Length = 209523

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 318   atgctcgaggagcagagagactt 340
             |||||||||||||||||||||||
Sbjct: 64081 atgctcgaggagcagagagactt 64103
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>gb|AC114912.3| Homo sapiens BAC clone RP11-552M14 from 4, complete sequence
          Length = 95468

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 503   aaattaaattattattttatttg 525
             |||||||||||||||||||||||
Sbjct: 16491 aaattaaattattattttatttg 16513
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>gb|AC155160.4| Mus musculus BAC clone RP24-510B6 from chromosome 17, complete sequence
          Length = 208376

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 318    atgctcgaggagcagagagactt 340
              |||||||||||||||||||||||
Sbjct: 120724 atgctcgaggagcagagagactt 120702
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>dbj|AP006380.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT01O24, TM0227,
             complete sequence
          Length = 84166

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 513   attattttatttgatgcaagtcg 535
             |||||||||||||||||||||||
Sbjct: 72790 attattttatttgatgcaagtcg 72812
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>gb|AY920295.1| Spathius brevicaudis voucher EAB-008 16S ribosomal RNA gene,
           partial sequence; mitochondrial
          Length = 479

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 502 taaattaaattattattttatttgat 527
           ||||||||||| ||||||||||||||
Sbjct: 189 taaattaaatttttattttatttgat 164
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>gb|AY920294.1| Spathius brevicaudis voucher EAB-007 16S ribosomal RNA gene,
           partial sequence; mitochondrial
          Length = 479

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 502 taaattaaattattattttatttgat 527
           ||||||||||| ||||||||||||||
Sbjct: 189 taaattaaatttttattttatttgat 164
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>gb|AY920293.1| Spathius brevicaudis voucher EAB-003 16S ribosomal RNA gene,
           partial sequence; mitochondrial
          Length = 479

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 502 taaattaaattattattttatttgat 527
           ||||||||||| ||||||||||||||
Sbjct: 189 taaattaaatttttattttatttgat 164
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>ref|XM_445281.1| Candida glabrata CBS138, CAGL0C02409g partial mRNA
          Length = 2973

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 389  tgatgaggacgatccgagatttaaagatga 418
            |||||||||||||||||| ||||| |||||
Sbjct: 1446 tgatgaggacgatccgagctttaatgatga 1475
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>emb|CR380949.1| Candida glabrata strain CBS138 chromosome C complete sequence
          Length = 558804

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 389    tgatgaggacgatccgagatttaaagatga 418
              |||||||||||||||||| ||||| |||||
Sbjct: 242094 tgatgaggacgatccgagctttaatgatga 242123
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>emb|CR626961.6| Zebrafish DNA sequence from clone CH211-160F13 in linkage group 10,
              complete sequence
          Length = 167229

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 498    aggctaaattaaattattattttatt 523
              |||||||||||||||||||| |||||
Sbjct: 123358 aggctaaattaaattattatcttatt 123333
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>emb|AL935322.13| Zebrafish DNA sequence from clone CH211-239B20, complete sequence
          Length = 163431

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 503   aaattaaattattattttattt 524
             ||||||||||||||||||||||
Sbjct: 41313 aaattaaattattattttattt 41292
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>ref|XM_380214.1| Gibberella zeae PH-1 chromosome 1 predicted protein (FG00038.1)
           partial mRNA
          Length = 558

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 325 aggagcagagagactttaagc 345
           |||||||||||||||||||||
Sbjct: 350 aggagcagagagactttaagc 370
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>emb|Z83117.1|CEM04C7 Caenorhabditis elegans Cosmid M04C7, complete sequence
          Length = 18964

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 508   aaattattattttatttgatg 528
             |||||||||||||||||||||
Sbjct: 12758 aaattattattttatttgatg 12738
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>gb|AC124562.4| Mus musculus BAC clone RP23-175B1 from 13, complete sequence
          Length = 198817

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 168    tatgatgtgagaagtgtcctc 188
              |||||||||||||||||||||
Sbjct: 197724 tatgatgtgagaagtgtcctc 197744
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>gb|AC121808.2| Mus musculus BAC clone RP23-449M23 from 13, complete sequence
          Length = 194020

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   tatgatgtgagaagtgtcctc 188
             |||||||||||||||||||||
Sbjct: 33173 tatgatgtgagaagtgtcctc 33193
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>emb|AL356278.8| Human DNA sequence from clone RP11-515J24 on chromosome 6, complete
             sequence
          Length = 182510

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 501   ctaaattaaattattattttatttg 525
             ||||||||| |||||||||||||||
Sbjct: 10130 ctaaattaatttattattttatttg 10106
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>emb|CR762400.8| Zebrafish DNA sequence from clone DKEYP-46G10 in linkage group 21,
             complete sequence
          Length = 153630

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 504   aattaaattattattttattt 524
             |||||||||||||||||||||
Sbjct: 37064 aattaaattattattttattt 37044
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>emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chromosome 4 Contains a
             phospholipase A2, group XIIA (Pla2g12) pseudogene,
             complete sequence
          Length = 200646

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 330   cagagagactttaagcaccaactaa 354
             |||||||||||||| ||||||||||
Sbjct: 79337 cagagagactttaaccaccaactaa 79361
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>gb|AF362375.2| Dictyostelium discoideum histidine kinase DhkE (dhkE) gene, complete
            cds
          Length = 7079

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 504  aattaaattattattttattt 524
            |||||||||||||||||||||
Sbjct: 6243 aattaaattattattttattt 6263
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>gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, complete sequence
          Length = 159620

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 166    aatatgatgtgagaagtgtcc 186
              |||||||||||||||||||||
Sbjct: 112202 aatatgatgtgagaagtgtcc 112222
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>gb|AC013815.27| Homo sapiens chromosome 8, clone RP11-21J16, complete sequence
          Length = 115281

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 502   taaattaaattattattttatttga 526
             ||||||||||||||||||| |||||
Sbjct: 28541 taaattaaattattattttttttga 28517
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>gb|AC009426.8|AC009426 Homo sapiens, clone RP11-45H19, complete sequence
          Length = 154313

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 501   ctaaattaaattattattttatttg 525
             ||||||||| |||||||||||||||
Sbjct: 52140 ctaaattaatttattattttatttg 52164
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>gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome 13, complete sequence
          Length = 233829

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 168    tatgatgtgagaagtgtcctc 188
              |||||||||||||||||||||
Sbjct: 208588 tatgatgtgagaagtgtcctc 208568
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>emb|AJ438726.1|AMA438726 Agriopis marginaria mitochondrion nd1 gene (partial), 16S rRNA gene
           (partial) and tRNA-Leu gene, isolate DNATAX-00377
          Length = 573

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 504 aattaaattattattttattt 524
           |||||||||||||||||||||
Sbjct: 56  aattaaattattattttattt 76
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>gb|AY742293.1| Malus x domestica 14-3-3 family protein mRNA, complete cds
          Length = 1090

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ggccaacttggccatgtaca 297
           ||||||||||||||||||||
Sbjct: 129 ggccaacttggccatgtaca 110
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>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 505    attaaattattattttattt 524
              ||||||||||||||||||||
Sbjct: 191343 attaaattattattttattt 191362
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>ref|XM_460616.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F06358g)
           partial mRNA
          Length = 816

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 554 agacaagtctttatcaataa 573
           ||||||||||||||||||||
Sbjct: 144 agacaagtctttatcaataa 125
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>gb|AC149069.2| X. tropicalis BAC clone ISB1-177L8 containing the iro1 gene, complete
             sequence
          Length = 94486

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 505   attaaattattattttatttgatg 528
             ||||||||||| ||||||||||||
Sbjct: 87882 attaaattatttttttatttgatg 87905
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 566      atcaataattactctattag 585
                ||||||||||||||||||||
Sbjct: 14462287 atcaataattactctattag 14462268
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>gb|AC115680.3| Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4,
             complete sequence
          Length = 90373

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   ttaaattattattttatttg 525
             ||||||||||||||||||||
Sbjct: 77330 ttaaattattattttatttg 77349
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>gb|AC152067.21| Medicago truncatula clone mth2-22g24, complete sequence
          Length = 86972

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 503   aaattaaattattattttat 522
             ||||||||||||||||||||
Sbjct: 29857 aaattaaattattattttat 29876
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>emb|CR450710.5| Zebrafish DNA sequence from clone CH211-197O6 in linkage group 2,
              complete sequence
          Length = 201624

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    taaattaaattattatttta 521
              ||||||||||||||||||||
Sbjct: 190957 taaattaaattattatttta 190938
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>emb|AL512410.14| Human DNA sequence from clone RP11-100E6 on chromosome 6, complete
              sequence
          Length = 160891

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 503    aaattaaattattattttat 522
              ||||||||||||||||||||
Sbjct: 140786 aaattaaattattattttat 140767
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>emb|AL357569.12| Human DNA sequence from clone RP13-137O14 on chromosome X, complete
            sequence
          Length = 92522

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 509  aattattattttatttgatg 528
            ||||||||||||||||||||
Sbjct: 9073 aattattattttatttgatg 9092
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>emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in linkage group 21,
              complete sequence
          Length = 243457

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 501    ctaaattaaattattattttattt 524
              |||||||| |||||||||||||||
Sbjct: 213747 ctaaattatattattattttattt 213724
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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
              hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 554    agacaagtctttatcaataa 573
              ||||||||||||||||||||
Sbjct: 530860 agacaagtctttatcaataa 530841
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     aattattattttatttgatg 528
               ||||||||||||||||||||
Sbjct: 1037652 aattattattttatttgatg 1037671
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>emb|AL391711.1|ATT19L5 Arabidopsis thaliana DNA chromosome 5, BAC clone T19L5 (ESSA project)
          Length = 82207

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 548   ttgtcaagacaagtctttat 567
             ||||||||||||||||||||
Sbjct: 33131 ttgtcaagacaagtctttat 33150
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>emb|AL138664.1|ATT5C2 Arabidopsis thaliana DNA chromosome 3, BAC clone T5C2
          Length = 103098

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   ctaaattaaattattatttt 520
             ||||||||||||||||||||
Sbjct: 93641 ctaaattaaattattatttt 93622
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>emb|AL035475.7|PFMAL4P2 Plasmodium falciparum MAL4P2
          Length = 234081

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 503   aaattaaattattattttat 522
             ||||||||||||||||||||
Sbjct: 54356 aaattaaattattattttat 54375
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>emb|BX908767.8| Zebrafish DNA sequence from clone DKEY-66B12 in linkage group 3,
             complete sequence
          Length = 177868

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   attaaattattattttattt 524
             ||||||||||||||||||||
Sbjct: 61111 attaaattattattttattt 61130
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>gb|AC153914.5| Mus musculus 10 BAC RP23-297H17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 174199

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 565    tatcaataattactctatta 584
              ||||||||||||||||||||
Sbjct: 151238 tatcaataattactctatta 151219
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>emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f20, COMPLETE SEQUENCE
          Length = 149149

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   tattattttatttgatgcaa 531
             ||||||||||||||||||||
Sbjct: 30436 tattattttatttgatgcaa 30455
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>gb|AC079073.7| Homo sapiens chromosome 11, clone RP11-72A10, complete sequence
          Length = 173119

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   catgtacaacgagcacacca 309
             ||||||||||||||||||||
Sbjct: 56421 catgtacaacgagcacacca 56402
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>emb|BX649495.8| Zebrafish DNA sequence from clone DKEY-177B16 in linkage group 2,
            complete sequence
          Length = 81705

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 505  attaaattattattttattt 524
            ||||||||||||||||||||
Sbjct: 5026 attaaattattattttattt 5045
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>gb|AC069444.17| Homo sapiens 3 BAC RP11-169N13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165093

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 558    aagtctttatcaataattac 577
              ||||||||||||||||||||
Sbjct: 130018 aagtctttatcaataattac 129999
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>gb|AF364606.1| Homo sapiens orphan nuclear receptors (NR1I2) gene, complete cds,
             alternatively spliced
          Length = 86081

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 558   aagtctttatcaataattac 577
             ||||||||||||||||||||
Sbjct: 23812 aagtctttatcaataattac 23831
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 508     aaattattattttatttgat 527
               ||||||||||||||||||||
Sbjct: 1117442 aaattattattttatttgat 1117423
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     aattattattttatttgatg 528
               ||||||||||||||||||||
Sbjct: 1085350 aattattattttatttgatg 1085369
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>gb|AC007112.6| Arabidopsis thaliana chromosome 2 clone F24C20 map mi398, complete
             sequence
          Length = 96371

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   attaaattattattttattt 524
             ||||||||||||||||||||
Sbjct: 27791 attaaattattattttattt 27772
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>gb|AC002387.3| Arabidopsis thaliana chromosome 2 clone F4L23 map CIC02E07, complete
             sequence
          Length = 122928

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   taaattaaattattatttta 521
             ||||||||||||||||||||
Sbjct: 75449 taaattaaattattatttta 75430
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>gb|AC092663.2| Homo sapiens BAC clone RP11-517B1 from 4, complete sequence
          Length = 110158

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 504   aattaaattattattttatt 523
             ||||||||||||||||||||
Sbjct: 11121 aattaaattattattttatt 11102
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     aattattattttatttgatg 528
               ||||||||||||||||||||
Sbjct: 1048626 aattattattttatttgatg 1048645
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>emb|AL772329.14| Zebrafish DNA sequence from clone CH211-150D5 in linkage group 3,
            complete sequence
          Length = 163559

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 505  attaaattattattttattt 524
            ||||||||||||||||||||
Sbjct: 8068 attaaattattattttattt 8087
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>emb|BX511216.7| Zebrafish DNA sequence from clone DKEY-27F16 in linkage group 1,
             complete sequence
          Length = 169841

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   attaaattattattttattt 524
             ||||||||||||||||||||
Sbjct: 62613 attaaattattattttattt 62632
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>emb|BX470204.13| Zebrafish DNA sequence from clone CH211-63C23 in linkage group 10,
              complete sequence
          Length = 185190

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 503    aaattaaattattattttat 522
              ||||||||||||||||||||
Sbjct: 144990 aaattaaattattattttat 145009
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 509    aattattattttatttgatg 528
              ||||||||||||||||||||
Sbjct: 945015 aattattattttatttgatg 945034
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     aattattattttatttgatg 528
               ||||||||||||||||||||
Sbjct: 1025152 aattattattttatttgatg 1025171
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 566      atcaataattactctattag 585
                ||||||||||||||||||||
Sbjct: 25573685 atcaataattactctattag 25573704
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 566      atcaataattactctattag 585
                ||||||||||||||||||||
Sbjct: 14457262 atcaataattactctattag 14457243
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>gb|AC105384.3| Homo sapiens BAC clone RP11-89B16 from 4, complete sequence
          Length = 155324

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 489    cagatcaagaggctaaattaaatt 512
              ||||||||||||||||| ||||||
Sbjct: 112429 cagatcaagaggctaaaataaatt 112452
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>dbj|AB125313.1| Nannochloris bacillaris NbrbcS1-2, GAMM1, Mut2 genes for
             ribulose-1,5-bisphosphate carboxyase/oxygenase small
             subunit, GAMM1 protein-like protein, DNA mismatch repair
             protein Mut2-like protein and genes for trypsin,
             peptidyl-prolyl cis-trans isomerase, complete cds
          Length = 12642

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   gcaccaccagctctgctgga 440
             ||||||||||||||||||||
Sbjct: 12353 gcaccaccagctctgctgga 12334
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>gb|AC144800.3| Mus musculus BAC clone RP24-257N2 from chromosome 10, complete sequence
          Length = 170671

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    ttaaattattattttatttg 525
              ||||||||||||||||||||
Sbjct: 164728 ttaaattattattttatttg 164709
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>gb|AC013469.8| Homo sapiens BAC clone RP11-463B12 from 2, complete sequence
          Length = 171419

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   attaaattattattttattt 524
             ||||||||||||||||||||
Sbjct: 90857 attaaattattattttattt 90876
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>gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4,
              complete sequence
          Length = 405682

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 505    attaaattattattttattt 524
              ||||||||||||||||||||
Sbjct: 153338 attaaattattattttattt 153357
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>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete
             sequence
          Length = 135594

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   atcaataattactctattag 585
             ||||||||||||||||||||
Sbjct: 79094 atcaataattactctattag 79113
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     aattattattttatttgatg 528
               ||||||||||||||||||||
Sbjct: 1008929 aattattattttatttgatg 1008948
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     aattattattttatttgatg 528
               ||||||||||||||||||||
Sbjct: 1009022 aattattattttatttgatg 1009041
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>emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, complete sequence
          Length = 194853

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   taaattaaattattatttta 521
             ||||||||||||||||||||
Sbjct: 76832 taaattaaattattatttta 76851
to top
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0523F01
          Length = 146419

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   atcaataattactctattag 585
             ||||||||||||||||||||
Sbjct: 92002 atcaataattactctattag 92021
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>emb|AL844186.7| Zebrafish DNA sequence from clone DKEY-265G24, complete sequence
          Length = 221158

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    attaaattattattttattt 524
              ||||||||||||||||||||
Sbjct: 132974 attaaattattattttattt 132955
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>emb|CR388166.7| Zebrafish DNA sequence from clone DKEY-17E16 in linkage group 21,
             complete sequence
          Length = 220882

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 504   aattaaattattattttatt 523
             ||||||||||||||||||||
Sbjct: 23905 aattaaattattattttatt 23886
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     aattattattttatttgatg 528
               ||||||||||||||||||||
Sbjct: 1049546 aattattattttatttgatg 1049565
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>dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-812L3, complete
             sequences
          Length = 169152

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 507   taaattattattttatttga 526
             ||||||||||||||||||||
Sbjct: 22875 taaattattattttatttga 22894
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>emb|CT009687.10| Zebrafish DNA sequence from clone DKEY-5I20 in linkage group 14, complete
              sequence
          Length = 189137

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 504    aattaaattattattttatt 523
              ||||||||||||||||||||
Sbjct: 151518 aattaaattattattttatt 151537
to top
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 509    aattattattttatttgatg 528
              ||||||||||||||||||||
Sbjct: 975821 aattattattttatttgatg 975840
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>gb|AC153551.4| Mus musculus 10 BAC RP23-383A7 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 216106

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 565  tatcaataattactctatta 584
            ||||||||||||||||||||
Sbjct: 3755 tatcaataattactctatta 3736
to top
>gb|AC116860.15| Mus musculus chromosome 10, clone RP24-407B18, complete sequence
          Length = 193505

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 506    ttaaattattattttatttg 525
              ||||||||||||||||||||
Sbjct: 136488 ttaaattattattttatttg 136507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,640,585
Number of Sequences: 3902068
Number of extensions: 5640585
Number of successful extensions: 144427
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143804
Number of HSP's gapped (non-prelim): 623
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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