ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags11m15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-r... 595 e-167
2emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease in... 315 9e-83
3gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown funct... 295 8e-77
4gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds 117 4e-23
5gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown funct... 109 1e-20
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
7dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
8ref|NM_184249.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
9gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sa... 56 1e-04
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
11dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
12dbj|AK070101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
13gb|AY277400.1| Lytechinus variegatus aristaless-like homeobox pr... 44 0.51
14ref|XM_858785.1| PREDICTED: Canis familiaris similar to Serine/t... 42 2.0
15ref|XM_858762.1| PREDICTED: Canis familiaris similar to Serine/t... 42 2.0
16ref|XM_858743.1| PREDICTED: Canis familiaris similar to Serine/t... 42 2.0
17ref|XM_858723.1| PREDICTED: Canis familiaris similar to Serine/t... 42 2.0
18ref|XM_544006.2| PREDICTED: Canis familiaris similar to Serine/t... 42 2.0
19emb|AL358787.12| Human DNA sequence from clone RP11-181F12 on ch... 42 2.0
20gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 2.0
21gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 42 2.0
22gb|AC113493.9| Mus musculus chromosome 15, clone RP23-359H23, co... 40 8.0
23gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 8.0
24ref|XM_615401.2| PREDICTED: Bos taurus similar to serine/threoni... 40 8.0
25ref|NM_001040330.1| Danio rerio zgc:136662 (zgc:136662), mRNA 40 8.0
26gb|AC115055.9| Mus musculus chromosome 3, clone RP24-346I12, com... 40 8.0
27ref|XM_753018.1| Ustilago maydis 521 hypothetical protein (UM019... 40 8.0
28gb|AC117230.3| Mus musculus BAC clone RP23-385F15 from 16, compl... 40 8.0
29ref|NM_001012370.1| Danio rerio exostoses (multiple) 1c (ext1c),... 40 8.0
30gb|BC115216.1| Danio rerio exostoses (multiple) 1c, mRNA (cDNA c... 40 8.0
31gb|AC158922.8| Mus musculus chromosome 15, clone RP23-182C12, co... 40 8.0
32gb|AC090116.15| Homo sapiens 12q BAC RP11-578B16 (Roswell Park C... 40 8.0
33ref|XM_680169.1| PREDICTED: Danio rerio similar to EXT1c (LOC572... 40 8.0
34dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 8.0
35dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.0
36dbj|BS000238.1| Pan troglodytes chromosome 22 clone:PTB-016O01, ... 40 8.0
37gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene... 40 8.0
38emb|AL954242.1|PTB109N16 Pan troglodytes chromosome 22 BAC PTB-1... 40 8.0
39gb|AY734457.1| Danio rerio EXT1c mRNA, complete cds 40 8.0
40emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain... 40 8.0
41gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, comple... 40 8.0
42gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone ... 40 8.0
43emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chr... 40 8.0 
>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein
           (wrsi5-1) mRNA, complete cds
          Length = 608

 Score =  595 bits (300), Expect = e-167
 Identities = 409/443 (92%), Gaps = 3/443 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  accgcacaggtaaagctcgagctttgcgctaagagagttcatcggcagccatgaagagca 74
           ||||||||||| |||   |||||||||||||| || ||||||| |||  |||||||||||
Sbjct: 38  accgcacaggtgaagtgagagctttgcgctaa-agggttcatcagcaagcatgaagagca 96

                                                                       
Query: 75  ccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatcctctcccacg 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 97  ccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatcctctcacacg 156

                                                                       
Query: 135 ttaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacg 194
           | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 157 tgaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctccggggtcgacg 216

                                                                       
Query: 195 tctgcgacgacgcccacccccagtgccccaagggctgctccgcctgccgcgtggtgaccc 254
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 217 tctgcgacgacgcccacccccagtgccccaagggctgctcggcctgccgcgtggtgacgc 276

                                                                       
Query: 255 cgagccctcacaagacgttccgctgcgccgacatgaagagcaccgtcgacggcacctgcg 314
           | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 277 ccagccctcacaagacgttccggtgcgccgacatgaagagcaccgtcgatggcacctgcg 336

                                                                       
Query: 315 gtggcccatgcaaaaagcactgatcgcttcagggcttcaggctcggacgaggtgtgccgc 374
           | || ||||||||||||||||||||  ||||||||||||| ||| ||||||| |||||||
Sbjct: 337 gcgggccatgcaaaaagcactgatccgttcagggcttcagtctcagacgaggggtgccgc 396

                                                                       
Query: 375 ctagaataaagctcagatgagatgagcagtcatcgtgttgctatgtttgtgtgtgggccg 434
           ||| ||||||||||||||||||||||||||||| | |   ||||| || | |||||| ||
Sbjct: 397 ctaaaataaagctcagatgagatgagcagtcatggcg--cctatgcttctctgtgggtcg 454

                                  
Query: 435 tgctatacggccaacaatatgta 457
           |||||||||||||||||||||||
Sbjct: 455 tgctatacggccaacaatatgta 477
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>emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor
          Length = 498

 Score =  315 bits (159), Expect = 9e-83
 Identities = 257/289 (88%), Gaps = 3/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 54  catcggcagccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctgg 113
           |||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1   catcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctgg 60

                                                                       
Query: 114 tcatggggatcctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgca 173
           |||||||  ||||||| ||||| ||||||| ||  ||||||| |||||||||||||||||
Sbjct: 61  tcatgggagtcctctcgcacgtgaacgccgtctatttccccacgtgctgcaacaactgca 120

                                                                       
Query: 174 ggtccttctcgggggtcgacgtctgcgacgacgcccacccccagtgccccaagggctgct 233
           |||||||||| |||||||||||||||||||||||||| || ||||||||||  |||||||
Sbjct: 121 ggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgct 180

                                                                       
Query: 234 ccgcctgccgcgtggtgaccccgagccctcacaagacgttccgctgcgccgacatgaaga 293
           | || ||||||||||||||| ||| |||   | |||||||||||||||||||||||||  
Sbjct: 181 cggcgtgccgcgtggtgaccacgaaccc---ccagacgttccgctgcgccgacatgaaag 237

                                                            
Query: 294 gcaccgtcgacggcacctgcggtggcccatgcaaaaagcactgatcgct 342
            ||||||||||||||||||||| || |||||||| ||| ||||||||||
Sbjct: 238 ccaccgtcgacggcacctgcggcgggccatgcaagaagtactgatcgct 286
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>gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown function (wali5) mRNA,
           complete cds
          Length = 520

 Score =  295 bits (149), Expect = 8e-77
 Identities = 250/283 (88%), Gaps = 3/283 (1%)
 Strand = Plus / Plus

                                                                       
Query: 63  ccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggga 122
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 71  ccatgaagggcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggac 130

                                                                       
Query: 123 tcctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgcaggtccttct 182
           ||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 131 tcctctcacacgtgaacgccgattttttccccaagtgctgcaacaactgcaggtccttct 190

                                                                       
Query: 183 cgggggtcgacgtctgcgacgacgcccacccccagtgccccaagggctgctccgcctgcc 242
           |||||||||||||||||||||||||||||||| |||| ||| |||||||||| || ||||
Sbjct: 191 cgggggtcgacgtctgcgacgacgcccaccccaagtgtccccagggctgctcggcgtgcc 250

                                                                       
Query: 243 gcgtggtgaccccgagccctcacaagacgttccgctgcgccgacatgaagagcaccgtcg 302
           |||||||| |  |||||||   | | | ||  |||||||| || |||||   ||||||||
Sbjct: 251 gcgtggtgtcgacgagccc---cgaaatgtggcgctgcgcggatatgaaatccaccgtcg 307

                                                      
Query: 303 acggcacctgcggtggcccatgcaaaaagcactgatcgcttca 345
           |||||||||||||||| || ||||| ||| |||||||| ||||
Sbjct: 308 acggcacctgcggtggaccctgcaagaagtactgatcggttca 350



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 467 tcgtcactgtgttttctctctcgagaaaaagctggtgttgcttgttg 513
           ||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 467 tcgtcgctgtgttttctctctcgagaaaaagttggtgttgcttgttg 513
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>gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds
          Length = 585

 Score =  117 bits (59), Expect = 4e-23
 Identities = 133/157 (84%), Gaps = 3/157 (1%)
 Strand = Plus / Plus

                                                                       
Query: 65  atgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatc 124
           |||||||| | || ||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct: 76  atgaagagtagcacgctcgtggcgatcctgattctccaggccgtcctggtcatgggaatc 135

                                                                       
Query: 125 ctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctcg 184
           ||||| || |  ||||||||    ||||| || |||||| |||||||||||| |||||||
Sbjct: 136 ctctcacaggcgaacgccga---gttcccgaaatgctgcgacaactgcaggttcttctcg 192

                                                
Query: 185 ggggtcgacgtctgcgacgacgcccacccccagtgcc 221
           |||| ||  |||||||||||||||  |||| ||||||
Sbjct: 193 ggggccgtggtctgcgacgacgccggccccaagtgcc 229
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>gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown function (wali3) mRNA,
           complete cds
          Length = 564

 Score =  109 bits (55), Expect = 1e-20
 Identities = 114/133 (85%), Gaps = 3/133 (2%)
 Strand = Plus / Plus

                                                                       
Query: 89  atcctgatcctccaggccgtcctggtcatggggatcctctcccacgttaacgccgacttc 148
           ||||||||||| |||||||||||||||||||| |||||||| || |  |||||||| |||
Sbjct: 79  atcctgatccttcaggccgtcctggtcatgggaatcctctcacaggcgaacgccgagttc 138

                                                                       
Query: 149 ttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacgtctgcgacgacgcc 208
              |||||||||||| |||||||||||| ||||||||||| ||  |||||||| ||||||
Sbjct: 139 ---cccaagtgctgcgacaactgcaggttcttctcgggggccgtggtctgcgatgacgcc 195

                        
Query: 209 cacccccagtgcc 221
             |||| ||||||
Sbjct: 196 ggccccaagtgcc 208
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                           
Query: 62      gccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggg 121
               ||||||||||||| || ||||  || ||||||| | ||||||||||||||||||||||||
Sbjct: 1757733 gccatgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatgggg 1757674

                 
Query: 122     at 123
               ||
Sbjct: 1757673 at 1757672
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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504H10
          Length = 143515

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 62     gccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggg 121
              ||||||||||||| || ||||  || ||||||| | ||||||||||||||||||||||||
Sbjct: 100076 gccatgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatgggg 100017

                
Query: 122    at 123
              ||
Sbjct: 100016 at 100015
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>ref|NM_184249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 65  atgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggat 123
           |||||||||| || ||||  || ||||||| | ||||||||||||||||||||||||||
Sbjct: 1   atgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatggggat 59
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>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete
             sequence; splicing factor SF2-like protein (SF2) and
             universal stress protein (USP1) genes and Hv
             receptor-kinase-like pseudogene, complete cds; and
             retrotransposons Sandra6 and Sandra7, complete sequence
          Length = 82293

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 96    tcctccaggccgtcctggtcatggggatcctctccc 131
             ||||||||||| ||||||||||||| ||||||||||
Sbjct: 71810 tcctccaggccatcctggtcatgggaatcctctccc 71845
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 108      tcctggtcatggggatcctctcc 130
                |||||||||||||||||||||||
Sbjct: 25930562 tcctggtcatggggatcctctcc 25930540
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>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0017B12
          Length = 157424

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 108   tcctggtcatggggatcctctcc 130
             |||||||||||||||||||||||
Sbjct: 85660 tcctggtcatggggatcctctcc 85638
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>dbj|AK070101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044I16, full
           insert sequence
          Length = 2261

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 108 tcctggtcatggggatcctctcc 130
           |||||||||||||||||||||||
Sbjct: 818 tcctggtcatggggatcctctcc 840
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>gb|AY277400.1| Lytechinus variegatus aristaless-like homeobox protein mRNA, complete
            cds
          Length = 5321

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 546  tcatcaaaaacatgaaaatcagttct 571
            ||||||||||||||||||| ||||||
Sbjct: 5161 tcatcaaaaacatgaaaattagttct 5136
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>ref|XM_858785.1| PREDICTED: Canis familiaris similar to Serine/threonine-protein
            kinase 10 (Lymphocyte-oriented kinase), transcript
            variant 5 (LOC486876), mRNA
          Length = 4759

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 547  catcaaaaacatgaaaatcag 567
            |||||||||||||||||||||
Sbjct: 2555 catcaaaaacatgaaaatcag 2575
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>ref|XM_858762.1| PREDICTED: Canis familiaris similar to Serine/threonine-protein
            kinase 10 (Lymphocyte-oriented kinase), transcript
            variant 4 (LOC486876), mRNA
          Length = 4744

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 547  catcaaaaacatgaaaatcag 567
            |||||||||||||||||||||
Sbjct: 2540 catcaaaaacatgaaaatcag 2560
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>ref|XM_858743.1| PREDICTED: Canis familiaris similar to Serine/threonine-protein
            kinase 10 (Lymphocyte-oriented kinase), transcript
            variant 3 (LOC486876), mRNA
          Length = 4876

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 547  catcaaaaacatgaaaatcag 567
            |||||||||||||||||||||
Sbjct: 2672 catcaaaaacatgaaaatcag 2692
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>ref|XM_858723.1| PREDICTED: Canis familiaris similar to Serine/threonine-protein
            kinase 10 (Lymphocyte-oriented kinase), transcript
            variant 2 (LOC486876), mRNA
          Length = 4777

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 547  catcaaaaacatgaaaatcag 567
            |||||||||||||||||||||
Sbjct: 2573 catcaaaaacatgaaaatcag 2593
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>ref|XM_544006.2| PREDICTED: Canis familiaris similar to Serine/threonine-protein
            kinase 10 (Lymphocyte-oriented kinase), transcript
            variant 1 (LOC486876), mRNA
          Length = 5632

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 547  catcaaaaacatgaaaatcag 567
            |||||||||||||||||||||
Sbjct: 3428 catcaaaaacatgaaaatcag 3448
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>emb|AL358787.12| Human DNA sequence from clone RP11-181F12 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 118034

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 496   agctggtgttgcttgttgaat 516
             |||||||||||||||||||||
Sbjct: 45458 agctggtgttgcttgttgaat 45438
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 83      gcggcgatcctgatcctccaggccg 107
               |||||||||||||||||||| ||||
Sbjct: 1946744 gcggcgatcctgatcctccacgccg 1946720
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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 288    tgaagagcaccgtcgacggca 308
              |||||||||||||||||||||
Sbjct: 634902 tgaagagcaccgtcgacggca 634922
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>gb|AC113493.9| Mus musculus chromosome 15, clone RP23-359H23, complete sequence
          Length = 207687

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 551  aaaaacatgaaaatcagttc 570
            ||||||||||||||||||||
Sbjct: 1737 aaaaacatgaaaatcagttc 1756
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 154     caagtgctgcaacaactgca 173
               ||||||||||||||||||||
Sbjct: 2027891 caagtgctgcaacaactgca 2027872
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>ref|XM_615401.2| PREDICTED: Bos taurus similar to serine/threonine kinase 2
            (LOC535342), partial mRNA
          Length = 3692

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 547  catcaaaaacatgaaaatca 566
            ||||||||||||||||||||
Sbjct: 3235 catcaaaaacatgaaaatca 3254
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>ref|NM_001040330.1| Danio rerio zgc:136662 (zgc:136662), mRNA
          Length = 2659

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  gcaccgtcgacggcacctgc 313
            ||||||||||||||||||||
Sbjct: 1408 gcaccgtcgacggcacctgc 1389
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>gb|AC115055.9| Mus musculus chromosome 3, clone RP24-346I12, complete sequence
          Length = 204367

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   tgttgctatgtttgtgtgtg 429
             ||||||||||||||||||||
Sbjct: 91892 tgttgctatgtttgtgtgtg 91873
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>ref|XM_753018.1| Ustilago maydis 521 hypothetical protein (UM01964.1) partial mRNA
          Length = 1812

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 58  ggcagccatgaagagcacca 77
           ||||||||||||||||||||
Sbjct: 267 ggcagccatgaagagcacca 248
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>gb|AC117230.3| Mus musculus BAC clone RP23-385F15 from 16, complete sequence
          Length = 184556

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 500   ggtgttgcttgttgaataaa 519
             ||||||||||||||||||||
Sbjct: 83198 ggtgttgcttgttgaataaa 83217
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>ref|NM_001012370.1| Danio rerio exostoses (multiple) 1c (ext1c), mRNA
          Length = 2214

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  gcaccgtcgacggcacctgc 313
            ||||||||||||||||||||
Sbjct: 1156 gcaccgtcgacggcacctgc 1137
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>gb|BC115216.1| Danio rerio exostoses (multiple) 1c, mRNA (cDNA clone MGC:136662
            IMAGE:8000407), complete cds
          Length = 2659

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  gcaccgtcgacggcacctgc 313
            ||||||||||||||||||||
Sbjct: 1408 gcaccgtcgacggcacctgc 1389
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>gb|AC158922.8| Mus musculus chromosome 15, clone RP23-182C12, complete sequence
          Length = 201723

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 551   aaaaacatgaaaatcagttc 570
             ||||||||||||||||||||
Sbjct: 48580 aaaaacatgaaaatcagttc 48561
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>gb|AC090116.15| Homo sapiens 12q BAC RP11-578B16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 162004

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   agctcagatgagatgagcag 403
             ||||||||||||||||||||
Sbjct: 86131 agctcagatgagatgagcag 86150
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>ref|XM_680169.1| PREDICTED: Danio rerio similar to EXT1c (LOC572763), partial mRNA
          Length = 240

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 gcaccgtcgacggcacctgc 313
           ||||||||||||||||||||
Sbjct: 136 gcaccgtcgacggcacctgc 117
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     tgcggtggcccatgcaaaaa 330
               ||||||||||||||||||||
Sbjct: 1357655 tgcggtggcccatgcaaaaa 1357636
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    gttccgctgcgccgacatga 290
              ||||||||||||||||||||
Sbjct: 807673 gttccgctgcgccgacatga 807692
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>dbj|BS000238.1| Pan troglodytes chromosome 22 clone:PTB-016O01, map 22, complete
              sequences
          Length = 168017

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    acgcccacccccagtgcccc 223
              ||||||||||||||||||||
Sbjct: 156620 acgcccacccccagtgcccc 156639
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>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF),
            panthotenate metabolism flavoprotein (dfp),
            deoxyuridine-triphosphatase (dut), putative sensor
            protein (bdfA), GalF-like (galF), hypothetical protein
            genes, complete cds; putative helicase 2 gene, partial
            cds; and unknown genes
          Length = 13289

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  gttccgctgcgccgacatga 290
            ||||||||||||||||||||
Sbjct: 8366 gttccgctgcgccgacatga 8347
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>emb|AL954242.1|PTB109N16 Pan troglodytes chromosome 22 BAC PTB-109N16, complete sequence
          Length = 190477

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   acgcccacccccagtgcccc 223
             ||||||||||||||||||||
Sbjct: 61446 acgcccacccccagtgcccc 61465
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>gb|AY734457.1| Danio rerio EXT1c mRNA, complete cds
          Length = 2214

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  gcaccgtcgacggcacctgc 313
            ||||||||||||||||||||
Sbjct: 1156 gcaccgtcgacggcacctgc 1137
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>emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain 364
          Length = 526707

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 60     cagccatgaagagcaccaagctcg 83
              ||||||||||||| ||||||||||
Sbjct: 158311 cagccatgaagaggaccaagctcg 158334
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>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence
          Length = 179548

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 522    cctctgatggttgtgcgtgt 541
              ||||||||||||||||||||
Sbjct: 135462 cctctgatggttgtgcgtgt 135481
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>gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone rp23-117o7, complete
             sequence
          Length = 209737

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   tgtttgtgtgtgggccgtgc 437
             ||||||||||||||||||||
Sbjct: 97290 tgtttgtgtgtgggccgtgc 97271
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>emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chromosome 4, complete
            sequence
          Length = 194554

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 418  tgtttgtgtgtgggccgtgc 437
            ||||||||||||||||||||
Sbjct: 8226 tgtttgtgtgtgggccgtgc 8245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,598,196
Number of Sequences: 3902068
Number of extensions: 4598196
Number of successful extensions: 95667
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95316
Number of HSP's gapped (non-prelim): 347
length of query: 586
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 563
effective length of database: 17,143,297,704
effective search space: 9651676607352
effective search space used: 9651676607352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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