ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187347.2| Oryza sativa (japonica cultivar-group), mRNA 92 4e-16
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 92 4e-16
3dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 92 4e-16
4dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic D... 92 4e-16
5dbj|AK070990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 4e-16
6gb|AY104575.1| Zea mays PCO138774 mRNA sequence 92 4e-16
7dbj|D10660.1|IPBF1ATP Sweet potato mitochondrial F1-ATPase delta... 52 3e-04
8gb|AC124966.33| Medicago truncatula clone mth2-8i15, complete se... 42 0.32
9emb|AJ536587.1|MGL536587 Marthasterias glacialis partial mRNA fo... 40 1.3
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
11dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
12emb|AL162511.5|CNS01RHV Human chromosome 14 DNA sequence BAC R-2... 40 1.3
13ref|NM_117909.1| Arabidopsis thaliana unknown protein AT4G17990 ... 38 5.0
14gb|DQ214444.1| Taeniopygia guttata clone 0058P0026E11 ATP syntha... 38 5.0
15gb|DQ214443.1| Taeniopygia guttata clone 0058P0041C08 ATP syntha... 38 5.0
16gb|DQ214442.1| Taeniopygia guttata clone 0063P0025D01 ATP syntha... 38 5.0
17gb|DQ214441.1| Taeniopygia guttata clone 0063P0025E01 ATP syntha... 38 5.0
18gb|DQ214440.1| Taeniopygia guttata clone 0058P0032F10 ATP syntha... 38 5.0
19gb|DQ214439.1| Taeniopygia guttata clone 0058P0012B10 ATP syntha... 38 5.0
20gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence 38 5.0
21gb|AC091553.15| Trypanosoma brucei chromosome 7 clone RPCI93-10C... 38 5.0
22gb|AC102487.6| Mus musculus chromosome 5, clone RP24-496C22, com... 38 5.0
23gb|BC008273.1| Mus musculus ATP synthase, H+ transporting, mitoc... 38 5.0
24ref|NM_025313.1| Mus musculus ATP synthase, H+ transporting, mit... 38 5.0
25gb|AC137980.4| Mus musculus BAC clone RP24-69K24 from chromosome... 38 5.0
26gb|BT014114.1| Lycopersicon esculentum clone 133218F, mRNA sequence 38 5.0
27emb|CT010177.1| Mus musculus full open reading frame cDNA clone ... 38 5.0
28emb|AL731541.6| Human DNA sequence from clone RP11-472K8 on chro... 38 5.0
29emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, ... 38 5.0
30emb|AL021889.2|ATT6K21 Arabidopsis thaliana DNA chromosome 4, BA... 38 5.0
31gb|AC096951.2| Homo sapiens chromosome 1 clone RP4-739M21, compl... 38 5.0
32dbj|AK151151.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 38 5.0
33dbj|AK155285.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 38 5.0
34dbj|AK165932.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 38 5.0
35dbj|AK002330.1| Mus musculus adult male kidney cDNA, RIKEN full-... 38 5.0
36dbj|AK005082.1| Mus musculus adult male cerebellum cDNA, RIKEN f... 38 5.0
37dbj|AK076064.1| Mus musculus 11 days embryo whole body cDNA, RIK... 38 5.0
38dbj|AK018011.1| Mus musculus adult male thymus cDNA, RIKEN full-... 38 5.0
39dbj|AK180553.1| Mus musculus cDNA, clone:Y0G0114M23, strand:plus... 38 5.0
40gb|AC163704.4| Gallus gallus BAC clone CH261-114A20 from chromos... 38 5.0
41emb|AL929147.7| Mouse DNA sequence from clone RP23-429P18 on chr... 38 5.0 
>ref|NM_187347.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 935

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaagcctggtgttatgnctgtncacgagggaaatgatgttacaaagtactttgtgagca 60
           |||||||||||||| |  | || ||||||||||| ||| | || ||||||||||||||||
Sbjct: 436 tcaagcctggtgttctctcggtacacgagggaaacgatatcaccaagtactttgtgagca 495

                                          
Query: 61  gnggctttgcattcatccatgcaaactccat 91
           | |||||||||||  ||||||||||||||||
Sbjct: 496 gtggctttgcatttgtccatgcaaactccat 526
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1        tcaagcctggtgttatgnctgtncacgagggaaatgatgttacaaagtactttgtgagca 60
                |||||||||||||| |  | || ||||||||||| ||| | || ||||||||||||||||
Sbjct: 18479467 tcaagcctggtgttctctcggtacacgagggaaacgatatcaccaagtactttgtgagca 18479408

                                               
Query: 61       gnggctttgcattcatccatgcaaactccat 91
                | |||||||||||  ||||||||||||||||
Sbjct: 18479407 gtggctttgcatttgtccatgcaaactccat 18479377
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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1457_D07
          Length = 103688

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1    tcaagcctggtgttatgnctgtncacgagggaaatgatgttacaaagtactttgtgagca 60
            |||||||||||||| |  | || ||||||||||| ||| | || ||||||||||||||||
Sbjct: 8223 tcaagcctggtgttctctcggtacacgagggaaacgatatcaccaagtactttgtgagca 8164

                                           
Query: 61   gnggctttgcattcatccatgcaaactccat 91
            | |||||||||||  ||||||||||||||||
Sbjct: 8163 gtggctttgcatttgtccatgcaaactccat 8133
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>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_B11
          Length = 102824

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     tcaagcctggtgttatgnctgtncacgagggaaatgatgttacaaagtactttgtgagca 60
             |||||||||||||| |  | || ||||||||||| ||| | || ||||||||||||||||
Sbjct: 71315 tcaagcctggtgttctctcggtacacgagggaaacgatatcaccaagtactttgtgagca 71256

                                            
Query: 61    gnggctttgcattcatccatgcaaactccat 91
             | |||||||||||  ||||||||||||||||
Sbjct: 71255 gtggctttgcatttgtccatgcaaactccat 71225
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>dbj|AK070990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078O13, full
           insert sequence
          Length = 935

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaagcctggtgttatgnctgtncacgagggaaatgatgttacaaagtactttgtgagca 60
           |||||||||||||| |  | || ||||||||||| ||| | || ||||||||||||||||
Sbjct: 436 tcaagcctggtgttctctcggtacacgagggaaacgatatcaccaagtactttgtgagca 495

                                          
Query: 61  gnggctttgcattcatccatgcaaactccat 91
           | |||||||||||  ||||||||||||||||
Sbjct: 496 gtggctttgcatttgtccatgcaaactccat 526
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>gb|AY104575.1| Zea mays PCO138774 mRNA sequence
          Length = 1041

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 93/110 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaagcctggtgttatgnctgtncacgagggaaatgatgttacaaagtactttgtgagca 60
           |||||||||||||| |  | || || ||||| || ||||| || ||||||||||||||||
Sbjct: 453 tcaagcctggtgttctctcagtacatgaggggaacgatgtgaccaagtactttgtgagca 512

                                                             
Query: 61  gnggctttgcattcatccatgcaaactccattactgatgttgtggntgtt 110
           | || ||||| ||| ||||||||||||||||| ||||| |||||| ||||
Sbjct: 513 gtggatttgctttcgtccatgcaaactccattgctgatattgtggctgtt 562
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>dbj|D10660.1|IPBF1ATP Sweet potato mitochondrial F1-ATPase delta subunit mRNA, complete
           cds
          Length = 936

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                       
Query: 3   aagcctggtgttatgnctgtncacgagggaaatgatgttacaaagtactttgtgagcagn 62
           ||||||||||| ||| | || ||||| || ||||||||  | || |||||||||||  | 
Sbjct: 425 aagcctggtgtcatgtcggttcacgaaggtaatgatgtgtccaaatactttgtgagtggc 484

                                  
Query: 63  ggctttgcattcatccatgcaaa 85
           ||||| || ||||||||||||||
Sbjct: 485 ggcttcgctttcatccatgcaaa 507
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>gb|AC124966.33| Medicago truncatula clone mth2-8i15, complete sequence
          Length = 121141

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 45    aagtactttgtgagcagnggctttgcattcatccatgcaaactc 88
             ||||| ||||| ||||| ||||| || ||| |||||||||||||
Sbjct: 89883 aagtattttgtaagcagtggcttcgctttcgtccatgcaaactc 89926
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>emb|AJ536587.1|MGL536587 Marthasterias glacialis partial mRNA for extracellular
           signal-regulated protein kinase (erk gene)
          Length = 1247

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  tcatccatgcaaactccatt 92
           ||||||||||||||||||||
Sbjct: 344 tcatccatgcaaactccatt 363
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 86       ctccattactgatgttgtgg 105
                ||||||||||||||||||||
Sbjct: 29804324 ctccattactgatgttgtgg 29804305
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>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0683B11
          Length = 155955

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    ctccattactgatgttgtgg 105
             ||||||||||||||||||||
Sbjct: 48419 ctccattactgatgttgtgg 48400
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>emb|AL162511.5|CNS01RHV Human chromosome 14 DNA sequence BAC R-259K15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165126

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    tgcaaactccattactgatg 99
             ||||||||||||||||||||
Sbjct: 88197 tgcaaactccattactgatg 88178
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>ref|NM_117909.1| Arabidopsis thaliana unknown protein AT4G17990 mRNA, complete cds
          Length = 798

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  ttgcattcatccatgcaaa 85
           |||||||||||||||||||
Sbjct: 540 ttgcattcatccatgcaaa 558
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>gb|DQ214444.1| Taeniopygia guttata clone 0058P0026E11 ATP synthase H+ transporting
           mitochondrial F1 complex delta subunit variant-like
           mRNA, complete sequence
          Length = 534

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 168 aagtactttgtgagcagcggct 189
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>gb|DQ214443.1| Taeniopygia guttata clone 0058P0041C08 ATP synthase H+ transporting
           mitochondrial F1 complex delta subunit variant-like
           mRNA, complete sequence
          Length = 534

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 168 aagtactttgtgagcagcggct 189
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>gb|DQ214442.1| Taeniopygia guttata clone 0063P0025D01 ATP synthase H+ transporting
           mitochondrial F1 complex delta subunit-like mRNA,
           complete sequence
          Length = 678

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 311 aagtactttgtgagcagcggct 332
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>gb|DQ214441.1| Taeniopygia guttata clone 0063P0025E01 ATP synthase H+ transporting
           mitochondrial F1 complex delta subunit-like mRNA,
           complete sequence
          Length = 677

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 311 aagtactttgtgagcagcggct 332
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>gb|DQ214440.1| Taeniopygia guttata clone 0058P0032F10 ATP synthase H+ transporting
           mitochondrial F1 complex delta subunit-like mRNA,
           complete sequence
          Length = 676

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 311 aagtactttgtgagcagcggct 332
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>gb|DQ214439.1| Taeniopygia guttata clone 0058P0012B10 ATP synthase H+ transporting
           mitochondrial F1 complex delta subunit-like mRNA,
           complete sequence
          Length = 677

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 311 aagtactttgtgagcagcggct 332
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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 42      acaaagtactttgtgagca 60
               |||||||||||||||||||
Sbjct: 1492460 acaaagtactttgtgagca 1492442
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>gb|AC091553.15| Trypanosoma brucei chromosome 7 clone RPCI93-10C21, complete sequence
          Length = 166619

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 42     acaaagtactttgtgagca 60
              |||||||||||||||||||
Sbjct: 105555 acaaagtactttgtgagca 105573
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>gb|AC102487.6| Mus musculus chromosome 5, clone RP24-496C22, complete sequence
          Length = 167936

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 43     caaagtactttgtgagcag 61
              |||||||||||||||||||
Sbjct: 109120 caaagtactttgtgagcag 109102
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>gb|BC008273.1| Mus musculus ATP synthase, H+ transporting, mitochondrial F1
           complex, delta subunit, mRNA (cDNA clone MGC:6312
           IMAGE:2811419), complete cds
          Length = 849

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 346 aagtactttgtgagcagcggct 367
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>ref|NM_025313.1| Mus musculus ATP synthase, H+ transporting, mitochondrial F1
           complex, delta subunit (Atp5d), mRNA
          Length = 874

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 387 aagtactttgtgagcagcggct 408
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>gb|AC137980.4| Mus musculus BAC clone RP24-69K24 from chromosome 9, complete sequence
          Length = 221263

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     ttgcattcatccatgcaaa 85
              |||||||||||||||||||
Sbjct: 153624 ttgcattcatccatgcaaa 153642
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>gb|BT014114.1| Lycopersicon esculentum clone 133218F, mRNA sequence
          Length = 937

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 24  cacgagggaaatgatgttacaaagtactttgtgag 58
           |||||||| |||||||| |  ||||||||||||||
Sbjct: 457 cacgagggcaatgatgtgaacaagtactttgtgag 491
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>emb|CT010177.1| Mus musculus full open reading frame cDNA clone RZPDo836B1150D for
           gene Atp5d, ATP synthase, H+ transporting, mitochondrial
           F1 complex, delta subunit; complete cds, incl. stopcodon
          Length = 507

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 286 aagtactttgtgagcagcggct 307
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>emb|AL731541.6| Human DNA sequence from clone RP11-472K8 on chromosome 10 Contains the
             3' end of the CDH23 gene for cadherin related 23, a novel
             gene (FLJ00041 PP2135), the 3' end of the PSAP gene for
             prosaposin (variant Gaucher disease and variant
             metachromatic leukodystrophy) (GLBA, SAP1), a novel gene
             (FLJ00245) and a CpG island, complete sequence
          Length = 178254

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    attcatccatgcaaactcc 89
             |||||||||||||||||||
Sbjct: 72944 attcatccatgcaaactcc 72962
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>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47
          Length = 198067

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 67     ttgcattcatccatgcaaa 85
              |||||||||||||||||||
Sbjct: 145244 ttgcattcatccatgcaaa 145226
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>emb|AL021889.2|ATT6K21 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project)
          Length = 99643

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    ttgcattcatccatgcaaa 85
             |||||||||||||||||||
Sbjct: 68863 ttgcattcatccatgcaaa 68845
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>gb|AC096951.2| Homo sapiens chromosome 1 clone RP4-739M21, complete sequence
          Length = 102599

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 87    tccattactgatgttgtgg 105
             |||||||||||||||||||
Sbjct: 11027 tccattactgatgttgtgg 11009
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>dbj|AK151151.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830026B01 product:ATP synthase,
           H+ transporting, mitochondrial F1 complex, delta
           subunit, full insert sequence
          Length = 859

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 372 aagtactttgtgagcagcggct 393
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>dbj|AK155285.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630214F16
           product:ATP synthase, H+ transporting, mitochondrial F1
           complex, delta subunit, full insert sequence
          Length = 908

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 421 aagtactttgtgagcagcggct 442
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>dbj|AK165932.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
           library, clone:G730021J15 product:ATP synthase, H+
           transporting, mitochondrial F1 complex, delta subunit,
           full insert sequence
          Length = 874

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 386 aagtactttgtgagcagcggct 407
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>dbj|AK002330.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
           library, clone:0610008F14 product:ATP SYNTHASE DELTA
           CHAIN, MITOCHONDRIAL PRECURSOR (EC 3.6.3.14) homolog
           [Rattus norvegicus], full insert sequence
          Length = 874

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 387 aagtactttgtgagcagcggct 408
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>dbj|AK005082.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched
           library, clone:1500000I11 product:ATP SYNTHASE DELTA
           CHAIN, MITOCHONDRIAL PRECURSOR (EC 3.6.3.14) homolog
           [Rattus norvegicus], full insert sequence
          Length = 868

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 381 aagtactttgtgagcagcggct 402
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>dbj|AK076064.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2700060J05 product:ATP SYNTHASE
           DELTA CHAIN, MITOCHONDRIAL PRECURSOR (EC 3.6.3.14)
           homolog [Rattus norvegicus], full insert sequence
          Length = 846

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 362 aagtactttgtgagcagcggct 383
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>dbj|AK018011.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830454F19 product:ATP SYNTHASE DELTA
           CHAIN, MITOCHONDRIAL PRECURSOR (EC 3.6.3.14) homolog
           [Rattus norvegicus], full insert sequence
          Length = 870

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 383 aagtactttgtgagcagcggct 404
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>dbj|AK180553.1| Mus musculus cDNA, clone:Y0G0114M23, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000003669, based on BLAT search
          Length = 449

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 45  aagtactttgtgagcagnggct 66
           ||||||||||||||||| ||||
Sbjct: 108 aagtactttgtgagcagcggct 87
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>gb|AC163704.4| Gallus gallus BAC clone CH261-114A20 from chromosome ul, complete
             sequence
          Length = 198816

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tgttacaaagtactttgtg 56
             |||||||||||||||||||
Sbjct: 75586 tgttacaaagtactttgtg 75604
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>emb|AL929147.7| Mouse DNA sequence from clone RP23-429P18 on chromosome 2, complete
             sequence
          Length = 155602

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    tgatgttacaaagtacttt 53
             |||||||||||||||||||
Sbjct: 30951 tgatgttacaaagtacttt 30933


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 760,938
Number of Sequences: 3902068
Number of extensions: 760938
Number of successful extensions: 90788
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90708
Number of HSP's gapped (non-prelim): 80
length of query: 110
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 89
effective length of database: 17,151,101,840
effective search space: 1526448063760
effective search space used: 1526448063760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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