ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags11m08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470859.1| Oryza sativa (japonica cultivar-group), predic... 123 7e-25
2gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome... 123 7e-25
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 123 7e-25
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
5dbj|AK063311.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
6gb|BT018889.1| Zea mays clone EL01T0205H07.d mRNA sequence 52 0.002
7gb|AY107502.1| Zea mays PCO085297 mRNA sequence 52 0.002
8gb|AC102944.2| Homo sapiens chromosome 8, clone CTD2-3082P9, com... 46 0.13
9gb|AC091560.6| Homo sapiens chromosome 8, clone RP11-104D16, com... 46 0.13
10gb|AC151520.3| Medicago truncatula chromosome 2 BAC clone mte1-3... 42 2.0
11gb|AC153954.3| Mus musculus 10 BAC RP24-236E2 (Roswell Park Canc... 42 2.0
12dbj|AP000388.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.0
13gb|AC016368.3| Drosophila melanogaster clone BACR36A03, complete... 40 8.0
14gb|AC008257.6| Drosophila melanogaster clone BACR08A11, complete... 40 8.0
15gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genom... 40 8.0
16gb|AC185538.1| Drosophila melanogaster clone BACR04D19, complete... 40 8.0
17gb|AC121971.3| Mus musculus BAC clone RP24-275H22 from chromosom... 40 8.0
18emb|Z98256.1|HS309I22 Human DNA sequence from clone RP1-309I22 o... 40 8.0
19gb|AC175467.3| Pan troglodytes BAC clone CH251-302C22 from chrom... 40 8.0
20gb|AC183302.2| Pan troglodytes BAC clone CH251-258O5 from chromo... 40 8.0
21gb|AC068781.19| Homo sapiens 3 BAC RP11-457K10 (Roswell Park Can... 40 8.0
22gb|AE003789.5| Drosophila melanogaster chromosome 2R, section 6 ... 40 8.0 
>ref|XM_470859.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 7041

 Score =  123 bits (62), Expect = 7e-25
 Identities = 196/237 (82%), Gaps = 14/237 (5%)
 Strand = Plus / Plus

                                                                        
Query: 362  tccaagccacaccagtcttcattaccatcggatcaacagttcaaacatccagttaataat 421
            |||||||| ||||| ||||||| | |||||| |||||||| | |||||| ||||||||||
Sbjct: 6661 tccaagccccaccaatcttcatcatcatcgggtcaacagtaccaacatcaagttaataat 6720

                                                                        
Query: 422  aatcaggatcgtccggccagggttacccaaaggactggaactgtgaatgaatggcaacgt 481
               || ||||||| | |  |||| ||||||| ||||||| |||| |||||||||||||| 
Sbjct: 6721 ---caagatcgtcggtctcgggtgacccaaaagactggagctgtcaatgaatggcaacgc 6777

                                                                        
Query: 482  cggtcaggatacccaggga--gaagc-----tccggttccgacaagaaatatggcactgg 534
            || |||||||||| |||||  ||| |     |||||||| |||||||| |  ||||||||
Sbjct: 6778 cgttcaggatacc-agggaaggaatcaaaattccggttctgacaagaacttgggcactgg 6836

                                                                     
Query: 535  taggatgaagcagatctatgtcgccaaatcatcat---caagtagccatgccccatc 588
            ||||||||||||||||||||| || ||||||||||   ||||| |||||||||||||
Sbjct: 6837 taggatgaagcagatctatgttgcaaaatcatcatcagcaagtggccatgccccatc 6893



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                        
Query: 235  tgttaaacagccagtctcaagcagttcagatgctcgaactgttgagccttcatttgtccg 294
            |||| ||||||||| ||| |  |||||| |||||| ||||||| ||||||| |||| |||
Sbjct: 6468 tgttgaacagccagcctccacaagttcaaatgctcaaactgttcagccttcgtttgcccg 6527

                                          
Query: 295  gataggtgttatcggcaatgaagtcccaaa 324
            | ||||  | ||| ||||||||||||||||
Sbjct: 6528 ggtaggcatgatcagcaatgaagtcccaaa 6557
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>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0004M10, complete sequence
          Length = 152423

 Score =  123 bits (62), Expect = 7e-25
 Identities = 196/237 (82%), Gaps = 14/237 (5%)
 Strand = Plus / Plus

                                                                         
Query: 362   tccaagccacaccagtcttcattaccatcggatcaacagttcaaacatccagttaataat 421
             |||||||| ||||| ||||||| | |||||| |||||||| | |||||| ||||||||||
Sbjct: 65927 tccaagccccaccaatcttcatcatcatcgggtcaacagtaccaacatcaagttaataat 65986

                                                                         
Query: 422   aatcaggatcgtccggccagggttacccaaaggactggaactgtgaatgaatggcaacgt 481
                || ||||||| | |  |||| ||||||| ||||||| |||| |||||||||||||| 
Sbjct: 65987 ---caagatcgtcggtctcgggtgacccaaaagactggagctgtcaatgaatggcaacgc 66043

                                                                         
Query: 482   cggtcaggatacccaggga--gaagc-----tccggttccgacaagaaatatggcactgg 534
             || |||||||||| |||||  ||| |     |||||||| |||||||| |  ||||||||
Sbjct: 66044 cgttcaggatacc-agggaaggaatcaaaattccggttctgacaagaacttgggcactgg 66102

                                                                      
Query: 535   taggatgaagcagatctatgtcgccaaatcatcat---caagtagccatgccccatc 588
             ||||||||||||||||||||| || ||||||||||   ||||| |||||||||||||
Sbjct: 66103 taggatgaagcagatctatgttgcaaaatcatcatcagcaagtggccatgccccatc 66159



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                         
Query: 235   tgttaaacagccagtctcaagcagttcagatgctcgaactgttgagccttcatttgtccg 294
             |||| ||||||||| ||| |  |||||| |||||| ||||||| ||||||| |||| |||
Sbjct: 65734 tgttgaacagccagcctccacaagttcaaatgctcaaactgttcagccttcgtttgcccg 65793

                                           
Query: 295   gataggtgttatcggcaatgaagtcccaaa 324
             | ||||  | ||| ||||||||||||||||
Sbjct: 65794 ggtaggcatgatcagcaatgaagtcccaaa 65823
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  123 bits (62), Expect = 7e-25
 Identities = 196/237 (82%), Gaps = 14/237 (5%)
 Strand = Plus / Plus

                                                                            
Query: 362      tccaagccacaccagtcttcattaccatcggatcaacagttcaaacatccagttaataat 421
                |||||||| ||||| ||||||| | |||||| |||||||| | |||||| ||||||||||
Sbjct: 15804127 tccaagccccaccaatcttcatcatcatcgggtcaacagtaccaacatcaagttaataat 15804186

                                                                            
Query: 422      aatcaggatcgtccggccagggttacccaaaggactggaactgtgaatgaatggcaacgt 481
                   || ||||||| | |  |||| ||||||| ||||||| |||| |||||||||||||| 
Sbjct: 15804187 ---caagatcgtcggtctcgggtgacccaaaagactggagctgtcaatgaatggcaacgc 15804243

                                                                            
Query: 482      cggtcaggatacccaggga--gaagc-----tccggttccgacaagaaatatggcactgg 534
                || |||||||||| |||||  ||| |     |||||||| |||||||| |  ||||||||
Sbjct: 15804244 cgttcaggatacc-agggaaggaatcaaaattccggttctgacaagaacttgggcactgg 15804302

                                                                         
Query: 535      taggatgaagcagatctatgtcgccaaatcatcat---caagtagccatgccccatc 588
                ||||||||||||||||||||| || ||||||||||   ||||| |||||||||||||
Sbjct: 15804303 taggatgaagcagatctatgttgcaaaatcatcatcagcaagtggccatgccccatc 15804359



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                            
Query: 235      tgttaaacagccagtctcaagcagttcagatgctcgaactgttgagccttcatttgtccg 294
                |||| ||||||||| ||| |  |||||| |||||| ||||||| ||||||| |||| |||
Sbjct: 15803934 tgttgaacagccagcctccacaagttcaaatgctcaaactgttcagccttcgtttgcccg 15803993

                                              
Query: 295      gataggtgttatcggcaatgaagtcccaaa 324
                | ||||  | ||| ||||||||||||||||
Sbjct: 15803994 ggtaggcatgatcagcaatgaagtcccaaa 15804023



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 61       ctctgtcccattatcagtgcagct 84
                |||||||||||||| |||||||||
Sbjct: 20644707 ctctgtcccattataagtgcagct 20644730
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  123 bits (62), Expect = 7e-25
 Identities = 196/237 (82%), Gaps = 14/237 (5%)
 Strand = Plus / Plus

                                                                            
Query: 362      tccaagccacaccagtcttcattaccatcggatcaacagttcaaacatccagttaataat 421
                |||||||| ||||| ||||||| | |||||| |||||||| | |||||| ||||||||||
Sbjct: 15798661 tccaagccccaccaatcttcatcatcatcgggtcaacagtaccaacatcaagttaataat 15798720

                                                                            
Query: 422      aatcaggatcgtccggccagggttacccaaaggactggaactgtgaatgaatggcaacgt 481
                   || ||||||| | |  |||| ||||||| ||||||| |||| |||||||||||||| 
Sbjct: 15798721 ---caagatcgtcggtctcgggtgacccaaaagactggagctgtcaatgaatggcaacgc 15798777

                                                                            
Query: 482      cggtcaggatacccaggga--gaagc-----tccggttccgacaagaaatatggcactgg 534
                || |||||||||| |||||  ||| |     |||||||| |||||||| |  ||||||||
Sbjct: 15798778 cgttcaggatacc-agggaaggaatcaaaattccggttctgacaagaacttgggcactgg 15798836

                                                                         
Query: 535      taggatgaagcagatctatgtcgccaaatcatcat---caagtagccatgccccatc 588
                ||||||||||||||||||||| || ||||||||||   ||||| |||||||||||||
Sbjct: 15798837 taggatgaagcagatctatgttgcaaaatcatcatcagcaagtggccatgccccatc 15798893



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                            
Query: 235      tgttaaacagccagtctcaagcagttcagatgctcgaactgttgagccttcatttgtccg 294
                |||| ||||||||| ||| |  |||||| |||||| ||||||| ||||||| |||| |||
Sbjct: 15798468 tgttgaacagccagcctccacaagttcaaatgctcaaactgttcagccttcgtttgcccg 15798527

                                              
Query: 295      gataggtgttatcggcaatgaagtcccaaa 324
                | ||||  | ||| ||||||||||||||||
Sbjct: 15798528 ggtaggcatgatcagcaatgaagtcccaaa 15798557



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 61       ctctgtcccattatcagtgcagct 84
                |||||||||||||| |||||||||
Sbjct: 20637736 ctctgtcccattataagtgcagct 20637759
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>dbj|AK063311.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G03, full
            insert sequence
          Length = 2690

 Score =  123 bits (62), Expect = 7e-25
 Identities = 196/237 (82%), Gaps = 14/237 (5%)
 Strand = Plus / Plus

                                                                        
Query: 362  tccaagccacaccagtcttcattaccatcggatcaacagttcaaacatccagttaataat 421
            |||||||| ||||| ||||||| | |||||| |||||||| | |||||| ||||||||||
Sbjct: 2042 tccaagccccaccaatcttcatcatcatcgggtcaacagtaccaacatcaagttaataat 2101

                                                                        
Query: 422  aatcaggatcgtccggccagggttacccaaaggactggaactgtgaatgaatggcaacgt 481
               || ||||||| | |  |||| ||||||| ||||||| |||| |||||||||||||| 
Sbjct: 2102 ---caagatcgtcggtctcgggtgacccaaaagactggagctgtcaatgaatggcaacgc 2158

                                                                        
Query: 482  cggtcaggatacccaggga--gaagc-----tccggttccgacaagaaatatggcactgg 534
            || |||||||||| |||||  ||| |     |||||||| |||||||| |  ||||||||
Sbjct: 2159 cgttcaggatacc-agggaaggaatcaaaattccggttctgacaagaacttgggcactgg 2217

                                                                     
Query: 535  taggatgaagcagatctatgtcgccaaatcatcat---caagtagccatgccccatc 588
            ||||||||||||||||||||| || ||||||||||   ||||| |||||||||||||
Sbjct: 2218 taggatgaagcagatctatgttgcaaaatcatcatcagcaagtggccatgccccatc 2274



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                        
Query: 235  tgttaaacagccagtctcaagcagttcagatgctcgaactgttgagccttcatttgtccg 294
            |||| ||||||||| ||| |  |||||| |||||| ||||||| ||||||| |||| |||
Sbjct: 1849 tgttgaacagccagcctccacaagttcaaatgctcaaactgttcagccttcgtttgcccg 1908

                                          
Query: 295  gataggtgttatcggcaatgaagtcccaaa 324
            | ||||  | ||| ||||||||||||||||
Sbjct: 1909 ggtaggcatgatcagcaatgaagtcccaaa 1938
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>gb|BT018889.1| Zea mays clone EL01T0205H07.d mRNA sequence
          Length = 1720

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                      
Query: 527  ggcactggtaggatgaagcagatcta 552
            ||||||||||||||||||||||||||
Sbjct: 1317 ggcactggtaggatgaagcagatcta 1342
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>gb|AY107502.1| Zea mays PCO085297 mRNA sequence
          Length = 504

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 527 ggcactggtaggatgaagcagatcta 552
           ||||||||||||||||||||||||||
Sbjct: 417 ggcactggtaggatgaagcagatcta 392
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>gb|AC102944.2| Homo sapiens chromosome 8, clone CTD2-3082P9, complete sequence
          Length = 144383

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 521   aaatatggcactggtaggatgaa 543
             |||||||||||||||||||||||
Sbjct: 54589 aaatatggcactggtaggatgaa 54567
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>gb|AC091560.6| Homo sapiens chromosome 8, clone RP11-104D16, complete sequence
          Length = 190283

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 521   aaatatggcactggtaggatgaa 543
             |||||||||||||||||||||||
Sbjct: 74290 aaatatggcactggtaggatgaa 74312
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>gb|AC151520.3| Medicago truncatula chromosome 2 BAC clone mte1-34o12, complete
             sequence
          Length = 105113

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 439   cagggttacccaaaggactggaact 463
             ||||||||||| |||||||||||||
Sbjct: 89911 cagggttaccctaaggactggaact 89887
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>gb|AC153954.3| Mus musculus 10 BAC RP24-236E2 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 151818

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   gaactgttgagccttcatttg 290
             |||||||||||||||||||||
Sbjct: 76593 gaactgttgagccttcatttg 76573
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>dbj|AP000388.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MRI12
          Length = 18212

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 138   caattgacaagtcaggtacaa 158
             |||||||||||||||||||||
Sbjct: 11918 caattgacaagtcaggtacaa 11898
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>gb|AC016368.3| Drosophila melanogaster clone BACR36A03, complete sequence
          Length = 165876

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    acaggtgcaaccttgttggccacg 48
             ||||||||| ||||||||||||||
Sbjct: 67982 acaggtgcagccttgttggccacg 68005
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>gb|AC008257.6| Drosophila melanogaster clone BACR08A11, complete sequence
          Length = 170478

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 25     acaggtgcaaccttgttggccacg 48
              ||||||||| ||||||||||||||
Sbjct: 166138 acaggtgcagccttgttggccacg 166161
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>gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete
             sequence
          Length = 152417

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    ctctgtcccattatcagtgcagct 84
             |||||||||||||| |||||||||
Sbjct: 58464 ctctgtcccattataagtgcagct 58487
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>gb|AC185538.1| Drosophila melanogaster clone BACR04D19, complete sequence
          Length = 159597

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    acaggtgcaaccttgttggccacg 48
             ||||||||| ||||||||||||||
Sbjct: 20424 acaggtgcagccttgttggccacg 20447
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>gb|AC121971.3| Mus musculus BAC clone RP24-275H22 from chromosome 7, complete sequence
          Length = 195611

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   gagttctcagcatcagatag 192
             ||||||||||||||||||||
Sbjct: 37896 gagttctcagcatcagatag 37877
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>emb|Z98256.1|HS309I22 Human DNA sequence from clone RP1-309I22 on chromosome 22q12.1-13.2
             Contains the 3' end of the TIMP3 gene for tissue inhibitor
             of metalloproteinase 3 (Sorsby fundus dystrophy,
             pseudoinflammatory), a novel pseudogene, a pseudogene
             similar to part of Cytochrome B and part of the SYN3 gene
             for Synapsin III, complete sequence
          Length = 97684

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    gcaacagcatccaatagatg 104
             ||||||||||||||||||||
Sbjct: 54801 gcaacagcatccaatagatg 54820
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>gb|AC175467.3| Pan troglodytes BAC clone CH251-302C22 from chromosome unknown,
            complete sequence
          Length = 186532

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   gcaacagcatccaatagatg 104
            ||||||||||||||||||||
Sbjct: 5809 gcaacagcatccaatagatg 5828
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>gb|AC183302.2| Pan troglodytes BAC clone CH251-258O5 from chromosome unknown, complete
             sequence
          Length = 211208

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    gcaacagcatccaatagatg 104
             ||||||||||||||||||||
Sbjct: 94701 gcaacagcatccaatagatg 94682
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>gb|AC068781.19| Homo sapiens 3 BAC RP11-457K10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 197893

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 544   gcagatctatgtcgccaaatcatc 567
             ||||| ||||||||||||||||||
Sbjct: 12189 gcagagctatgtcgccaaatcatc 12166
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>gb|AE003789.5| Drosophila melanogaster chromosome 2R, section 6 of 73 of the complete
             sequence
          Length = 415717

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    acaggtgcaaccttgttggccacg 48
             ||||||||| ||||||||||||||
Sbjct: 37650 acaggtgcagccttgttggccacg 37673


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,888,701
Number of Sequences: 3902068
Number of extensions: 4888701
Number of successful extensions: 79414
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79202
Number of HSP's gapped (non-prelim): 207
length of query: 591
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 568
effective length of database: 17,143,297,704
effective search space: 9737393095872
effective search space used: 9737393095872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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