ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags11l23 |
|---|---|
| Clone Library Name | barley_pub |
>CACP_YEAST (P32796) Carnitine O-acetyltransferase, mitochondrial precursor (EC| 2.3.1.7) (Carnitine acetylase) Length = 670 Score = 32.3 bits (72), Expect = 0.71 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Frame = +3 Query: 252 KWRRADVPKADSV----------IDYFKNITDANGVIIHPSGVELLIHSSIDELASCYGD 401 KW+ DVP A+ + Y KN + NGV H G++ ++ S+ D++ + D Sbjct: 523 KWQNGDVPIAEKIQALKHSAKEHSTYLKNAANGNGVDRHFFGLKNMLKSNDDQIPPLFKD 582 Query: 402 KQGKKYRSWV 431 +W+ Sbjct: 583 PLFNYSSTWL 592
>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)| (AtRAD23-3) Length = 419 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 267 DVPKADSVIDYFKNITDANGVIIHPSGVELLIH 365 +V DSV+D KNI G ++P+ ++LIH Sbjct: 16 EVKPEDSVVDVKKNIESVQGADVYPAAKQMLIH 48
>DNAJ_LACAC (Q84BU3) Chaperone protein dnaJ| Length = 384 Score = 31.2 bits (69), Expect = 1.6 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C C G C +GT P+ C KC G Sbjct: 154 CETCGGNGCEKGTHPITCDKCHG 176
>LUXQ_VIBHA (P54302) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 859 Score = 30.8 bits (68), Expect = 2.1 Identities = 19/66 (28%), Positives = 31/66 (46%) Frame = +1 Query: 184 FLTSRRTLSSLQRPL*SSMFCTKSGVELMFQRLIQL*TTSKTSQMQMELLFIRLGSNF*S 363 F + RTL ++ RP+ CT GVEL+ + + T Q+++ + L SN Sbjct: 558 FTDTMRTLENIYRPI-----CTNKGVELVIENELDPNVEIFTDQVRLNQILFNLVSNAVK 612 Query: 364 IRPLMS 381 P+ S Sbjct: 613 FTPIGS 618
>DNAJ_PHOLL (Q7N8Y3) Chaperone protein dnaJ| Length = 372 Score = 30.4 bits (67), Expect = 2.7 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C CHG GT+PV C C+G Sbjct: 140 CDICHGSGAKAGTSPVTCSTCQG 162
>PSPB_HUMAN (P07988) Pulmonary surfactant-associated protein B precursor (SP-B)| (6 kDa protein) (Pulmonary surfactant-associated proteolipid SPL(Phe)) (18 kDa pulmonary-surfactant protein) Length = 381 Score = 30.0 bits (66), Expect = 3.5 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +3 Query: 288 VIDYFKNITDANGVIIH 338 VIDYF+N TD+NG+ +H Sbjct: 123 VIDYFQNQTDSNGICMH 139
>DNAJ_CLOPE (Q8XIT1) Chaperone protein dnaJ| Length = 387 Score = 29.6 bits (65), Expect = 4.6 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C CHG GT+P C KC G Sbjct: 157 CETCHGTGAKAGTSPKTCPKCNG 179
>DNAJ_SYMTH (Q67S53) Chaperone protein dnaJ| Length = 386 Score = 29.6 bits (65), Expect = 4.6 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C CHG GT PV C KC G Sbjct: 152 CDTCHGSGARPGTQPVTCPKCGG 174
>DNAJ_BORPA (Q7W520) Chaperone protein dnaJ| Length = 377 Score = 29.3 bits (64), Expect = 6.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C CHG GT+P CR C G Sbjct: 150 CDTCHGSGAKAGTSPKTCRTCGG 172
>DNAJ_BORBR (Q7WGI5) Chaperone protein dnaJ| Length = 373 Score = 29.3 bits (64), Expect = 6.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C CHG GT+P CR C G Sbjct: 146 CDTCHGSGAKAGTSPKTCRTCGG 168
>DNAJ_STRPY (P0C0B5) Chaperone protein dnaJ| Length = 378 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C C G GT PV CRKC G Sbjct: 147 CGTCLGSGAKPGTAPVTCRKCHG 169
>DNAJ_STRP8 (Q8NZM7) Chaperone protein dnaJ| Length = 378 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C C G GT PV CRKC G Sbjct: 147 CGTCLGSGAKPGTAPVTCRKCHG 169
>DNAJ_STRP6 (Q5XAD7) Chaperone protein dnaJ| Length = 378 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C C G GT PV CRKC G Sbjct: 147 CGTCLGSGAKPGTAPVTCRKCHG 169
>DNAJ_STRP3 (Q8K625) Chaperone protein dnaJ| Length = 378 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C C G GT PV CRKC G Sbjct: 147 CGTCLGSGAKPGTAPVTCRKCHG 169
>DNAJ_STRP1 (P0C0B6) Chaperone protein dnaJ| Length = 378 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C C G GT PV CRKC G Sbjct: 147 CGTCLGSGAKPGTAPVTCRKCHG 169
>DNAJ_BORPE (Q7VVY3) Chaperone protein dnaJ| Length = 385 Score = 29.3 bits (64), Expect = 6.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C CHG GT+P CR C G Sbjct: 158 CDTCHGSGAKAGTSPKTCRTCGG 180
>LRP2_RAT (P98158) Low-density lipoprotein receptor-related protein 2 precursor| (Megalin) (Glycoprotein 330) (gp330) Length = 4660 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = +2 Query: 200 GPFQAYSGHC---EVLCSVRKVA*S*CSKG*FSYRLLQKHHRCK 322 G FQ G+C + LC+ R+ C+ G R+L +HHRC+ Sbjct: 3558 GQFQCRDGNCTSPQALCNARQD----CADGSDEDRVLCEHHRCE 3597
>DNAJ_STRA5 (Q8E298) Chaperone protein dnaJ| Length = 379 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C C G GT+PV C+KC G Sbjct: 148 CHTCSGSGAKPGTSPVTCQKCHG 170
>DNAJ_STRA3 (Q8E7Q7) Chaperone protein dnaJ| Length = 379 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C C G GT+PV C+KC G Sbjct: 148 CHTCSGSGAKPGTSPVTCQKCHG 170
>DNAJ_LEGPN (P50025) Chaperone protein dnaJ| Length = 379 Score = 28.9 bits (63), Expect = 7.8 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 CT C G +GT+P C C+G Sbjct: 148 CTVCEGSGAKKGTSPKTCETCQG 170
>DNAJ_LEGPL (Q5WV16) Chaperone protein dnaJ| Length = 379 Score = 28.9 bits (63), Expect = 7.8 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 CT C G +GT+P C C+G Sbjct: 148 CTVCEGSGAKKGTSPKTCETCQG 170
>DNAJ_LEGPH (Q5ZTY4) Chaperone protein dnaJ| Length = 379 Score = 28.9 bits (63), Expect = 7.8 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 CT C G +GT+P C C+G Sbjct: 148 CTVCEGSGAKKGTSPKTCETCQG 170
>DNAJ_LEGPA (Q5X3M8) Chaperone protein dnaJ| Length = 379 Score = 28.9 bits (63), Expect = 7.8 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 CT C G +GT+P C C+G Sbjct: 148 CTVCEGSGAKKGTSPKTCETCQG 170
>DNAJ_STRMU (Q8DWH2) Chaperone protein dnaJ| Length = 377 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 11 CTWCHG*QCPRGTTPVACRKCEG 79 C C+G GT+PV C KC G Sbjct: 146 CHTCNGSGAKPGTSPVTCSKCHG 168
>IQG1_YEAST (Q12280) Ras GTPase-activating-like protein IQG1 (IQGAP-related| protein 1) (Cytokinesis protein 1) Length = 1495 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 150 LGPNVTPRDDVFPYVKEDPFKPTAAIVKFYVLYEKWRRADVPKADSVIDYFKNITDAN 323 LG N+ + P E+P + + ++K + K+ R ++P + +I KNITDAN Sbjct: 258 LGTNI----NTAPASPEEPKEKRSGLIKDF---NKFERPNIPVEEILITPRKNITDAN 308 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,334,171 Number of Sequences: 219361 Number of extensions: 1429776 Number of successful extensions: 3685 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3619 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3685 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
