ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags11l20 |
|---|---|
| Clone Library Name | barley_pub |
>SYT_TROWT (Q83GK5) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 640 Score = 29.6 bits (65), Expect = 1.9 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 11/105 (10%) Frame = +3 Query: 36 HYLGR-KPWLCFRDYDC----NWNVPILREF----ASDIAHTRXWKVHDKMPKKLQSYC- 185 HY G PWL + ++P L EF +S + R + D++PKK++SY Sbjct: 519 HYAGAFPPWLSPEQVVALPVTSAHIPYLEEFVSRFSSRLIRARVDYMQDRLPKKIRSYVK 578 Query: 186 -LLRSRLKAGLEWERRQAEKANFTDGHWKRNITDKRLKICFEKFC 317 + L AG + F DG I+D ++ CF+ C Sbjct: 579 EKIPFVLVAGDRDLTNRTVAIRFRDG---TQISDLPIQKCFDGIC 620
>SYT_TROW8 (Q83HM3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 640 Score = 29.6 bits (65), Expect = 1.9 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 11/105 (10%) Frame = +3 Query: 36 HYLGR-KPWLCFRDYDC----NWNVPILREF----ASDIAHTRXWKVHDKMPKKLQSYC- 185 HY G PWL + ++P L EF +S + R + D++PKK++SY Sbjct: 519 HYAGAFPPWLSPEQVVALPVTSAHIPYLEEFVSRFSSRLIRARVDYMQDRLPKKIRSYVK 578 Query: 186 -LLRSRLKAGLEWERRQAEKANFTDGHWKRNITDKRLKICFEKFC 317 + L AG + F DG I+D ++ CF+ C Sbjct: 579 EKIPFVLVAGDRDLTNRTVAIRFRDG---TQISDLPIQKCFDGIC 620
>XYLT2_PANTR (Q5QQ51) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)| (Peptide O-xylosyltransferase 2) Length = 865 Score = 29.3 bits (64), Expect = 2.5 Identities = 9/28 (32%), Positives = 18/28 (64%) Frame = +3 Query: 159 MPKKLQSYCLLRSRLKAGLEWERRQAEK 242 MPK + +C L ++ G++W+ QA++ Sbjct: 198 MPKAVPRHCQLTGKMSPGIQWDESQAQQ 225
>XYLT2_HUMAN (Q9H1B5) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)| (xylT-II) (XT-II) (Peptide O-xylosyltransferase 1) Length = 865 Score = 29.3 bits (64), Expect = 2.5 Identities = 9/28 (32%), Positives = 18/28 (64%) Frame = +3 Query: 159 MPKKLQSYCLLRSRLKAGLEWERRQAEK 242 MPK + +C L ++ G++W+ QA++ Sbjct: 198 MPKAVPRHCQLTGKMSPGIQWDESQAQQ 225
>ASPM_SAIBB (P62296) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3469 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +3 Query: 9 ANPPILYVLHYLGRKPWLCFRD 74 A+PP+L++ H+ R P+LCF D Sbjct: 34 ASPPVLFLSHFC-RSPFLCFGD 54
>XYLT2_MOUSE (Q9EPL0) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)| (Peptide O-xylosyltransferase 2) Length = 865 Score = 28.1 bits (61), Expect = 5.5 Identities = 9/28 (32%), Positives = 18/28 (64%) Frame = +3 Query: 159 MPKKLQSYCLLRSRLKAGLEWERRQAEK 242 MPK + +C L ++ G++WE +A++ Sbjct: 198 MPKSVPRHCQLAGKMSPGVQWEEIRAQQ 225
>XYLT2_RAT (Q9EPI0) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)| (Peptide O-xylosyltransferase 2) Length = 864 Score = 28.1 bits (61), Expect = 5.5 Identities = 9/28 (32%), Positives = 18/28 (64%) Frame = +3 Query: 159 MPKKLQSYCLLRSRLKAGLEWERRQAEK 242 MPK + +C L ++ G++WE +A++ Sbjct: 198 MPKSVPRHCQLAGKVSPGIQWEEVRAQQ 225
>YA2F_SCHPO (Q09705) Hypothetical protein C2F7.15 in chromosome I| Length = 258 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +3 Query: 153 DKMPKKLQSYCLLRSRLKAGLEWERRQAEKAN---FTDGHWKRNITDKRL 293 DK LQ+ L L + +E +R AEK + GHWK DKR+ Sbjct: 171 DKYSSALQNKYHLIKILTSLIEESKRNAEKFSHVPLNTGHWKYKKCDKRM 220
>MMP2_CHICK (Q90611) 72 kDa type IV collagenase precursor (EC 3.4.24.24) (72| kDa gelatinase) (Matrix metalloproteinase-2) (MMP-2) (Gelatinase A) Length = 663 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = +3 Query: 162 PKKLQSYCLLRS--RLKAGLEWERRQAEKANFTDGHWKRNITDKRLKICFEKF 314 PKKL S L R+ A W R + D +WK N K++++ KF Sbjct: 556 PKKLTSLGLPPDVQRIDAAFNWGRNKKTYIFSGDRYWKYNEEKKKMELATPKF 608
>TAF12_YEAST (Q03761) Transcription initiation factor TFIID subunit 12| (TBP-associated factor 12) (TBP-associated factor 61 kDa) (TAFII-61) (TAFII61) (TAFII-68) (TAFII68) Length = 539 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +3 Query: 84 NWNVPILREFASDIAHTRXWKVHDKMPKKLQS 179 NWN+ I A +I TR W +KLQS Sbjct: 485 NWNIRIPGYSADEIRSTRKWNPSQNYNQKLQS 516
>LRP6_MOUSE (O88572) Low-density lipoprotein receptor-related protein 6| precursor Length = 1613 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/49 (32%), Positives = 20/49 (40%) Frame = +3 Query: 216 EWERRQAEKANFTDGHWKRNITDKRLKICFEKFCFWESMLWHWGEAPNS 362 +W RR E+AN T G R I L + F S W E +S Sbjct: 849 DWSRRSIERANKTSGQ-NRTIIQGHLDYVMDILVFHSSRQAGWNECASS 896
>LRP6_HUMAN (O75581) Low-density lipoprotein receptor-related protein 6| precursor Length = 1613 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/49 (32%), Positives = 20/49 (40%) Frame = +3 Query: 216 EWERRQAEKANFTDGHWKRNITDKRLKICFEKFCFWESMLWHWGEAPNS 362 +W RR E+AN T G R I L + F S W E +S Sbjct: 849 DWSRRSIERANKTSGQ-NRTIIQGHLDYVMDILVFHSSRQSGWNECASS 896
>ASPM_MACMU (P62292) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3479 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +3 Query: 9 ANPPILYVLHYLGRKPWLCFRD 74 ++PP+L++ H+ R P+LCF D Sbjct: 34 SSPPVLFLSHFC-RSPFLCFGD 54
>YIBD_ECOLI (P11290) Putative glycosyl transferase yibD (EC 2.-.-.-)| Length = 344 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +3 Query: 249 FTDGHWKRNITDKR-LKICFEKFCFWESMLWHWGEAPNS 362 FT G +KR IT+ R +K+ ++ W LW W + S Sbjct: 295 FTSGMYKRLITNVRSVKVGYQAL-LWSFRLWQWRDKTRS 332
>POLG_HCVVO (O92531) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3015 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 15/66 (22%) Frame = +1 Query: 13 THRSSTSSTTWAANHG---------------YASGTMTATGTFRYCGSLPATLRTPGGGR 147 T R + TW AN + M +TG + CG+ P R G G Sbjct: 518 TDRKGLPTYTWGANESDVFLLRSTRPPRGSWFGCTWMNSTGFVKTCGAPPCNTRPVGSGN 577 Query: 148 CMTRCP 165 CP Sbjct: 578 DTLVCP 583
>GASA2_ARATH (P46688) Gibberellin-regulated protein 2 precursor| Length = 99 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +1 Query: 139 GGRCMTRCPRSSRATAC 189 GGRC RC +SSR C Sbjct: 42 GGRCKDRCSKSSRTKLC 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,974,632 Number of Sequences: 219361 Number of extensions: 694775 Number of successful extensions: 2227 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2098 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2221 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
