ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags11l15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450625.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2027 Score = 38.2 bits (19), Expect = 0.78 Identities = 28/31 (90%) Strand = Plus / Plus Query: 1 acactgatgtcaagaacaacccggcagttac 31 |||||||||||||||| ||||| || ||||| Sbjct: 1396 acactgatgtcaagaagaaccctgcggttac 1426
>emb|BX842615.1| Neurospora crassa DNA linkage group V BAC clone B4B2 Length = 70741 Score = 38.2 bits (19), Expect = 0.78 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 tgtcaagaacaacccggca 26 ||||||||||||||||||| Sbjct: 15715 tgtcaagaacaacccggca 15697
>dbj|AK049493.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430017F13 product:unclassifiable, full insert sequence Length = 3109 Score = 38.2 bits (19), Expect = 0.78 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acactgatgtcaagaacaa 19 ||||||||||||||||||| Sbjct: 2284 acactgatgtcaagaacaa 2266
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 0.78 Identities = 28/31 (90%) Strand = Plus / Minus Query: 1 acactgatgtcaagaacaacccggcagttac 31 |||||||||||||||| ||||| || ||||| Sbjct: 11867872 acactgatgtcaagaagaaccctgcggttac 11867842
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 38.2 bits (19), Expect = 0.78 Identities = 28/31 (90%) Strand = Plus / Minus Query: 1 acactgatgtcaagaacaacccggcagttac 31 |||||||||||||||| ||||| || ||||| Sbjct: 49362 acactgatgtcaagaagaaccctgcggttac 49332
>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1506_A04 Length = 114998 Score = 38.2 bits (19), Expect = 0.78 Identities = 28/31 (90%) Strand = Plus / Minus Query: 1 acactgatgtcaagaacaacccggcagttac 31 |||||||||||||||| ||||| || ||||| Sbjct: 110690 acactgatgtcaagaagaaccctgcggttac 110660
>dbj|AK072899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148B06, full insert sequence Length = 2027 Score = 38.2 bits (19), Expect = 0.78 Identities = 28/31 (90%) Strand = Plus / Plus Query: 1 acactgatgtcaagaacaacccggcagttac 31 |||||||||||||||| ||||| || ||||| Sbjct: 1396 acactgatgtcaagaagaaccctgcggttac 1426
>gb|AC123548.4| Mus musculus BAC clone RP23-441J16 from 6, complete sequence Length = 178488 Score = 38.2 bits (19), Expect = 0.78 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 acactgatgtcaagaacaa 19 ||||||||||||||||||| Sbjct: 122771 acactgatgtcaagaacaa 122789
>ref|XM_365426.1| Magnaporthe grisea 70-15 hypothetical protein (MG02128.4) partial mRNA Length = 1176 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 gatgtcaagaacaacccg 23 |||||||||||||||||| Sbjct: 589 gatgtcaagaacaacccg 606
>emb|AJ249340.1|CLU249340 Erwinia carotovora ompA gene for putative outer-membrane protein A Length = 1104 Score = 36.2 bits (18), Expect = 3.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 1 acactgatgtcaagaacaaccc 22 ||||||||||||| |||||||| Sbjct: 146 acactgatgtcaacaacaaccc 167
>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome Length = 1395502 Score = 36.2 bits (18), Expect = 3.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 9 gtcaagaacaacccggcagtta 30 |||||||| ||||||||||||| Sbjct: 877752 gtcaagaataacccggcagtta 877773
>emb|AL844571.8| Mouse DNA sequence from clone RP23-224C23 on chromosome 2, complete sequence Length = 182273 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acactgatgtcaagaaca 18 |||||||||||||||||| Sbjct: 141313 acactgatgtcaagaaca 141330 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 157,487 Number of Sequences: 3902068 Number of extensions: 157487 Number of successful extensions: 39012 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38977 Number of HSP's gapped (non-prelim): 35 length of query: 34 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 14 effective length of database: 17,155,003,908 effective search space: 240170054712 effective search space used: 240170054712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
