ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12a14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PI5K1_ORYSA (Q6EX42) Phosphatidylinositol-4-phosphate 5-kinase 1... 29 9.2
2ZN619_HUMAN (Q8N2I2) Zinc finger protein 619 29 9.2
3PYC_PICAN (Q8X1T3) Pyruvate carboxylase (EC 6.4.1.1) (Pyruvic ca... 29 9.2

>PI5K1_ORYSA (Q6EX42) Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (EC|
           2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase)
           (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide
           kinase)
          Length = 801

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +1

Query: 187 VVQKLLLN-----FVRRPQIPSNDSHPVFSDDGGPGVLQRVGS 300
           ++QKL  N     F+ RP+  SN + PVF D+ G  + Q V S
Sbjct: 257 LLQKLCKNWRLRRFLHRPRRISNGTTPVFDDNSGSHLCQDVSS 299



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>ZN619_HUMAN (Q8N2I2) Zinc finger protein 619|
          Length = 560

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 CSAYSDPLPKMHLNERVHSNRRCLHE*FNYQCQGC 506
           C +Y +P    HL++RVH+N +       Y C+ C
Sbjct: 193 CGSYYNPHSDFHLHQRVHTNEK------PYTCKEC 221



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>PYC_PICAN (Q8X1T3) Pyruvate carboxylase (EC 6.4.1.1) (Pyruvic carboxylase)|
           (PCB)
          Length = 1175

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
 Frame = +1

Query: 232 PSNDSHPVFSDDGGPGVLQRVGSAAANFVLLPYYTFNYFVSASAEGATSQLADNSLLVLL 411
           P      V+   GG GV    G+  A  ++ P+Y  +  V  S  G+  ++A   ++  L
Sbjct: 377 PDTGKIEVYRSSGGNGVRLDGGNGFAGAIISPHYD-SMLVKCSTSGSNYEIARRKMIRAL 435

Query: 412 ILIHYRKCISMNESIP------TDGVYMSDS--TTNVKDAPAFHE 522
           +    R    +  +IP      T   ++S    TT + D P+  E
Sbjct: 436 VEFRIR---GVKTNIPFLLALLTHPTFVSGDCWTTFIDDTPSLFE 477


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,456,723
Number of Sequences: 219361
Number of extensions: 1241446
Number of successful extensions: 2845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2845
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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