| Clone Name | bags11l14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108482.1| Zea mays PCO148683 mRNA sequence Length = 1298 Score = 452 bits (228), Expect = e-124 Identities = 393/448 (87%) Strand = Plus / Plus Query: 42 caaaagggaactggaagagcacgtcatggaacattgcgtggttgtcagtttcgaggaggt 101 ||||| ||||| |||| |||||| ||||||||| |||| ||| |||||||| || ||| Sbjct: 512 caaaaaggaaccggaaaagcacgacatggaacactgcgcggtgcccagtttcgtggtggt 571 Query: 102 gcaactatgcatggcccgaaaccacgaagccatgcattcaagttgcagaagaaagtacga 161 ||||| |||||||| || ||||| |||||||||||| ||||| |||||||||||||||| Sbjct: 572 gcaaccatgcatgggcctaaacctcgaagccatgcaatcaagctgcagaagaaagtacgg 631 Query: 162 cgtctgggacttaagatagccttgtctgctagaacagctgaggggaagctctgcatcttt 221 || ||||| |||||||| |||||||||||| |||| |||||||||||||||| |||||| Sbjct: 632 cggctggggcttaagattgccttgtctgctcgaactgctgaggggaagctcttgatcttt 691 Query: 222 gaggacttagaagtccctagccacaagacgaaaaacatcgtgcagtacataaagcagatg 281 |||||||| ||||| ||||||||||||||||||||||| ||||| ||||| | |||||| Sbjct: 692 gaggacttggaagttcctagccacaagacgaaaaacattgtgcaatacattagacagatg 751 Query: 282 gatgatacgaagaagatattgttggtggatggaggtgacattgataagaagttaaagctg 341 ||||| | |||||| | |||||||||||||||| ||||||||||||||| |||||||| Sbjct: 752 gatgactcaaagaaggttctgttggtggatggaggcgacattgataagaagctaaagctg 811 Query: 342 gctactcaaaatcttcactacgtgaatgtcattccttcgattggcctcaatgtctacagc 401 || |||||||| ||||||||||| || || ||||||| ||||||||||| |||||||| Sbjct: 812 gccactcaaaaccttcactacgttaacgtacttccttccattggcctcaacgtctacagt 871 Query: 402 atcctgcagcatgacacccttgtaatgactcgggacgccatcaacagaatcgttgagcgg 461 ||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||| Sbjct: 872 atcctccagcatgacacccttgtaatgactcgggccgctatcaacagaatcgtcgagcgg 931 Query: 462 atgcacacccccatcagccgctagcaag 489 ||||| |||||||||| ||||||||||| Sbjct: 932 atgcatacccccatcaaccgctagcaag 959
>gb|BT017691.1| Zea mays clone EL01N0444C11.c mRNA sequence Length = 1227 Score = 422 bits (213), Expect = e-115 Identities = 387/445 (86%) Strand = Plus / Plus Query: 42 caaaagggaactggaagagcacgtcatggaacattgcgtggttgtcagtttcgaggaggt 101 ||||| ||||| |||| |||||| ||||||||| |||| ||| |||||||| || ||| Sbjct: 456 caaaaaggaaccggaaaagcacgacatggaacactgcgcggtgcccagtttcgtggtggt 515 Query: 102 gcaactatgcatggcccgaaaccacgaagccatgcattcaagttgcagaagaaagtacga 161 ||||| |||||||| || ||||| ||||| |||| | ||||| |||||||||||||||| Sbjct: 516 gcaaccatgcatgggcctaaacctcgaagtcatgaaatcaagctgcagaagaaagtacgg 575 Query: 162 cgtctgggacttaagatagccttgtctgctagaacagctgaggggaagctctgcatcttt 221 || ||||| |||||||| |||||||||||| |||| |||||||||||||||| |||||| Sbjct: 576 cggctggggcttaagattgccttgtctgctcgaactgctgaggggaagctcttgatcttt 635 Query: 222 gaggacttagaagtccctagccacaagacgaaaaacatcgtgcagtacataaagcagatg 281 |||||||| ||||| ||||||||||||||||||||||| ||||| ||||| | |||||| Sbjct: 636 gaggacttggaagttcctagccacaagacgaaaaacattgtgcaatacattagacagatg 695 Query: 282 gatgatacgaagaagatattgttggtggatggaggtgacattgataagaagttaaagctg 341 ||||| | |||||| | |||||||||||||||| ||||||||||||||| ||||| || Sbjct: 696 gatgactcaaagaaggttctgttggtggatggaggcgacattgataagaagctaaagttg 755 Query: 342 gctactcaaaatcttcactacgtgaatgtcattccttcgattggcctcaatgtctacagc 401 || |||||||| ||||||||||| || || ||||||| ||||||||||| |||||||| Sbjct: 756 gccactcaaaaccttcactacgttaacgtacttccttccattggcctcaacgtctacagt 815 Query: 402 atcctgcagcatgacacccttgtaatgactcgggacgccatcaacagaatcgttgagcgg 461 ||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||| Sbjct: 816 atcctccagcatgacacccttgtaatgactcgggccgctatcaacagaatcgtcgagcgg 875 Query: 462 atgcacacccccatcagccgctagc 486 ||||| |||||||||| |||||||| Sbjct: 876 atgcatacccccatcaaccgctagc 900
>dbj|AK069751.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030I10, full insert sequence Length = 1218 Score = 383 bits (193), Expect = e-103 Identities = 407/476 (85%), Gaps = 2/476 (0%) Strand = Plus / Plus Query: 12 gagcggcacaggnaagnaaagccttataaacaaaagggaactggaagagcacgtcatgga 71 |||||||||||| ||| ||| ||||| || ||||| |||||||| |||||||| ||||| Sbjct: 481 gagcggcacagg-aagaaaa-ccttacaatcaaaaaggaactggcagagcacgacatggt 538 Query: 72 acattgcgtggttgtcagtttcgaggaggtgcaactatgcatggcccgaaaccacgaagc 131 ||| |||| || ||||||||| || |||||||| |||||||| || ||||||||||| Sbjct: 539 acactgcgcggccctcagtttcgcggtggtgcaaccatgcatgggcctaaaccacgaagt 598 Query: 132 catgcattcaagttgcagaagaaagtacgacgtctgggacttaagatagccttgtctgct 191 ||||| | |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 599 catgcgattaagttgcagaagaaagtacggcgtctgggacttaagatagcattatctgct 658 Query: 192 agaacagctgaggggaagctctgcatctttgaggacttagaagtccctagccacaagacg 251 |||| |||||||| ||||||| ||||||| ||| | ||||| |||||||||||||| Sbjct: 659 cgaaccgctgagggaaagctcttggtctttgatgacctcgaagttcctagccacaagaca 718 Query: 252 aaaaacatcgtgcagtacataaagcagatggatgatacgaagaagatattgttggtggat 311 |||||||| ||||||||||| |||||||| | || |||||| | |||||||| ||| Sbjct: 719 aaaaacattgtgcagtacattggccagatggaaggcacaaagaaggttttgttggtagat 778 Query: 312 ggaggtgacattgataagaagttaaagctggctactcaaaatcttcactacgtgaatgtc 371 ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct: 779 ggaggtgacattgataagaagttaaagctggctacccagaatcttcactatgtgaatgtt 838 Query: 372 attccttcgattggcctcaatgtctacagcatcctgcagcatgacacccttgtaatgact 431 |||| || |||||||| ||||| ||||||||||| || |||||||| |||| |||||| Sbjct: 839 cttccatccattggcctaaatgtatacagcatccttcaacatgacactcttgaaatgacg 898 Query: 432 cgggacgccatcaacagaatcgttgagcggatgcacacccccatcagccgctagca 487 ||| | || ||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 899 cggaatgctatcaatagaattgttgagcgtatgcacacccccatcagccgctagca 954
>gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0480H08, complete sequence Length = 156301 Score = 147 bits (74), Expect = 5e-32 Identities = 134/154 (87%) Strand = Plus / Plus Query: 217 tctttgaggacttagaagtccctagccacaagacgaaaaacatcgtgcagtacataaagc 276 ||||||| ||| | ||||| |||||||||||||| |||||||| ||||||||||| | Sbjct: 46317 tctttgatgacctcgaagttcctagccacaagacaaaaaacattgtgcagtacattggcc 46376 Query: 277 agatggatgatacgaagaagatattgttggtggatggaggtgacattgataagaagttaa 336 ||||||| | || |||||| | |||||||| |||||||||||||||||||||||||||| Sbjct: 46377 agatggaaggcacaaagaaggttttgttggtagatggaggtgacattgataagaagttaa 46436 Query: 337 agctggctactcaaaatcttcactacgtgaatgt 370 |||||||||| || ||||||||||| |||||||| Sbjct: 46437 agctggctacccagaatcttcactatgtgaatgt 46470 Score = 125 bits (63), Expect = 2e-25 Identities = 105/119 (88%) Strand = Plus / Plus Query: 87 cagtttcgaggaggtgcaactatgcatggcccgaaaccacgaagccatgcattcaagttg 146 |||||||| || |||||||| |||||||| || ||||||||||| ||||| | |||||| Sbjct: 45412 cagtttcgcggtggtgcaaccatgcatgggcctaaaccacgaagtcatgcgattaagttg 45471 Query: 147 cagaagaaagtacgacgtctgggacttaagatagccttgtctgctagaacagctgaggg 205 |||||||||||||| |||||||||||||||||||| || |||||| |||| |||||||| Sbjct: 45472 cagaagaaagtacggcgtctgggacttaagatagcattatctgctcgaaccgctgaggg 45530 Score = 111 bits (56), Expect = 3e-21 Identities = 92/104 (88%) Strand = Plus / Plus Query: 384 ggcctcaatgtctacagcatcctgcagcatgacacccttgtaatgactcgggacgccatc 443 ||||| ||||| ||||||||||| || |||||||| ||||||||||| ||| | || ||| Sbjct: 46583 ggcctaaatgtatacagcatccttcaacatgacactcttgtaatgacgcggaatgctatc 46642 Query: 444 aacagaatcgttgagcggatgcacacccccatcagccgctagca 487 || ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 46643 aatagaattgttgagcgtatgcacacccccatcagccgctagca 46686
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 147 bits (74), Expect = 5e-32 Identities = 134/154 (87%) Strand = Plus / Plus Query: 217 tctttgaggacttagaagtccctagccacaagacgaaaaacatcgtgcagtacataaagc 276 ||||||| ||| | ||||| |||||||||||||| |||||||| ||||||||||| | Sbjct: 21288845 tctttgatgacctcgaagttcctagccacaagacaaaaaacattgtgcagtacattggcc 21288904 Query: 277 agatggatgatacgaagaagatattgttggtggatggaggtgacattgataagaagttaa 336 ||||||| | || |||||| | |||||||| |||||||||||||||||||||||||||| Sbjct: 21288905 agatggaaggcacaaagaaggttttgttggtagatggaggtgacattgataagaagttaa 21288964 Query: 337 agctggctactcaaaatcttcactacgtgaatgt 370 |||||||||| || ||||||||||| |||||||| Sbjct: 21288965 agctggctacccagaatcttcactatgtgaatgt 21288998 Score = 125 bits (63), Expect = 2e-25 Identities = 105/119 (88%) Strand = Plus / Plus Query: 87 cagtttcgaggaggtgcaactatgcatggcccgaaaccacgaagccatgcattcaagttg 146 |||||||| || |||||||| |||||||| || ||||||||||| ||||| | |||||| Sbjct: 21287940 cagtttcgcggtggtgcaaccatgcatgggcctaaaccacgaagtcatgcgattaagttg 21287999 Query: 147 cagaagaaagtacgacgtctgggacttaagatagccttgtctgctagaacagctgaggg 205 |||||||||||||| |||||||||||||||||||| || |||||| |||| |||||||| Sbjct: 21288000 cagaagaaagtacggcgtctgggacttaagatagcattatctgctcgaaccgctgaggg 21288058 Score = 111 bits (56), Expect = 3e-21 Identities = 92/104 (88%) Strand = Plus / Plus Query: 384 ggcctcaatgtctacagcatcctgcagcatgacacccttgtaatgactcgggacgccatc 443 ||||| ||||| ||||||||||| || |||||||| ||||||||||| ||| | || ||| Sbjct: 21289111 ggcctaaatgtatacagcatccttcaacatgacactcttgtaatgacgcggaatgctatc 21289170 Query: 444 aacagaatcgttgagcggatgcacacccccatcagccgctagca 487 || ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 21289171 aatagaattgttgagcgtatgcacacccccatcagccgctagca 21289214
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 147 bits (74), Expect = 5e-32 Identities = 134/154 (87%) Strand = Plus / Plus Query: 217 tctttgaggacttagaagtccctagccacaagacgaaaaacatcgtgcagtacataaagc 276 ||||||| ||| | ||||| |||||||||||||| |||||||| ||||||||||| | Sbjct: 21599044 tctttgatgacctcgaagttcctagccacaagacaaaaaacattgtgcagtacattggcc 21599103 Query: 277 agatggatgatacgaagaagatattgttggtggatggaggtgacattgataagaagttaa 336 ||||||| | || |||||| | |||||||| |||||||||||||||||||||||||||| Sbjct: 21599104 agatggaaggcacaaagaaggttttgttggtagatggaggtgacattgataagaagttaa 21599163 Query: 337 agctggctactcaaaatcttcactacgtgaatgt 370 |||||||||| || ||||||||||| |||||||| Sbjct: 21599164 agctggctacccagaatcttcactatgtgaatgt 21599197 Score = 125 bits (63), Expect = 2e-25 Identities = 105/119 (88%) Strand = Plus / Plus Query: 87 cagtttcgaggaggtgcaactatgcatggcccgaaaccacgaagccatgcattcaagttg 146 |||||||| || |||||||| |||||||| || ||||||||||| ||||| | |||||| Sbjct: 21598139 cagtttcgcggtggtgcaaccatgcatgggcctaaaccacgaagtcatgcgattaagttg 21598198 Query: 147 cagaagaaagtacgacgtctgggacttaagatagccttgtctgctagaacagctgaggg 205 |||||||||||||| |||||||||||||||||||| || |||||| |||| |||||||| Sbjct: 21598199 cagaagaaagtacggcgtctgggacttaagatagcattatctgctcgaaccgctgaggg 21598257 Score = 111 bits (56), Expect = 3e-21 Identities = 92/104 (88%) Strand = Plus / Plus Query: 384 ggcctcaatgtctacagcatcctgcagcatgacacccttgtaatgactcgggacgccatc 443 ||||| ||||| ||||||||||| || |||||||| ||||||||||| ||| | || ||| Sbjct: 21599310 ggcctaaatgtatacagcatccttcaacatgacactcttgtaatgacgcggaatgctatc 21599369 Query: 444 aacagaatcgttgagcggatgcacacccccatcagccgctagca 487 || ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 21599370 aatagaattgttgagcgtatgcacacccccatcagccgctagca 21599413
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 127 bits (64), Expect = 5e-26 Identities = 94/104 (90%) Strand = Plus / Plus Query: 87 cagtttcgaggaggtgcaactatgcatggcccgaaaccacgaagccatgcattcaagttg 146 |||||||| || ||||||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 18345327 cagtttcgtggtggtgcaactatgcatggacctaaaccacgaagccatgcaatcaagttg 18345386 Query: 147 cagaagaaagtacgacgtctgggacttaagatagccttgtctgc 190 || ||||| || || ||||||||||| ||||||||||||||||| Sbjct: 18345387 caaaagaaggtccgtcgtctgggactgaagatagccttgtctgc 18345430 Score = 95.6 bits (48), Expect = 2e-16 Identities = 138/168 (82%) Strand = Plus / Plus Query: 217 tctttgaggacttagaagtccctagccacaagacgaaaaacatcgtgcagtacataaagc 276 ||||||||||||| ||||| ||||||||||||||||| ||| | ||| || |||| | Sbjct: 18346119 tctttgaggacttggaagttcctagccacaagacgaagaacgttgtgagctatataagcc 18346178 Query: 277 agatggatgatacgaagaagatattgttggtggatggaggtgacattgataagaagttaa 336 ||||||| || || ||||| | | |||| |||||||| || || ||||| ||| ||| Sbjct: 18346179 agatggaggacacaaagaaagtgctactggttgatggaggcgatatcgataaaaagctaa 18346238 Query: 337 agctggctactcaaaatcttcactacgtgaatgtcattccttcgattg 384 ||||||||||||||||||| |||||||||||||| ||||||| |||| Sbjct: 18346239 agctggctactcaaaatctccactacgtgaatgtgcttccttcaattg 18346286 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 29 aaagccttataaacaaaagggaactggaagagcacgtcatggaacattgcgtggt 83 ||||||||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 18345160 aaagccttacaagcaaaaaggaactggaagagcacgtcatggaacattgcgtggt 18345214 Score = 79.8 bits (40), Expect = 1e-11 Identities = 85/100 (85%) Strand = Plus / Plus Query: 387 ctcaatgtctacagcatcctgcagcatgacacccttgtaatgactcgggacgccatcaac 446 ||||| |||||||||||||| |||||||||||||| ||||||||||| || || | || Sbjct: 18346427 ctcaacgtctacagcatcctccagcatgacaccctcgtaatgactcgcgatgctgtgaat 18346486 Query: 447 agaatcgttgagcggatgcacacccccatcagccgctagc 486 | || |||||||| ||||| |||||||||| |||||||| Sbjct: 18346487 cggattgttgagcgaatgcatacccccatcaaccgctagc 18346526
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 127 bits (64), Expect = 5e-26 Identities = 94/104 (90%) Strand = Plus / Plus Query: 87 cagtttcgaggaggtgcaactatgcatggcccgaaaccacgaagccatgcattcaagttg 146 |||||||| || ||||||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 18271648 cagtttcgtggtggtgcaactatgcatggacctaaaccacgaagccatgcaatcaagttg 18271707 Query: 147 cagaagaaagtacgacgtctgggacttaagatagccttgtctgc 190 || ||||| || || ||||||||||| ||||||||||||||||| Sbjct: 18271708 caaaagaaggtccgtcgtctgggactgaagatagccttgtctgc 18271751 Score = 95.6 bits (48), Expect = 2e-16 Identities = 138/168 (82%) Strand = Plus / Plus Query: 217 tctttgaggacttagaagtccctagccacaagacgaaaaacatcgtgcagtacataaagc 276 ||||||||||||| ||||| ||||||||||||||||| ||| | ||| || |||| | Sbjct: 18272440 tctttgaggacttggaagttcctagccacaagacgaagaacgttgtgagctatataagcc 18272499 Query: 277 agatggatgatacgaagaagatattgttggtggatggaggtgacattgataagaagttaa 336 ||||||| || || ||||| | | |||| |||||||| || || ||||| ||| ||| Sbjct: 18272500 agatggaggacacaaagaaagtgctactggttgatggaggcgatatcgataaaaagctaa 18272559 Query: 337 agctggctactcaaaatcttcactacgtgaatgtcattccttcgattg 384 ||||||||||||||||||| |||||||||||||| ||||||| |||| Sbjct: 18272560 agctggctactcaaaatctccactacgtgaatgtgcttccttcaattg 18272607 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 29 aaagccttataaacaaaagggaactggaagagcacgtcatggaacattgcgtggt 83 ||||||||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 18271481 aaagccttacaagcaaaaaggaactggaagagcacgtcatggaacattgcgtggt 18271535 Score = 79.8 bits (40), Expect = 1e-11 Identities = 85/100 (85%) Strand = Plus / Plus Query: 387 ctcaatgtctacagcatcctgcagcatgacacccttgtaatgactcgggacgccatcaac 446 ||||| |||||||||||||| |||||||||||||| ||||||||||| || || | || Sbjct: 18272748 ctcaacgtctacagcatcctccagcatgacaccctcgtaatgactcgcgatgctgtgaat 18272807 Query: 447 agaatcgttgagcggatgcacacccccatcagccgctagc 486 | || |||||||| ||||| |||||||||| |||||||| Sbjct: 18272808 cggattgttgagcgaatgcatacccccatcaaccgctagc 18272847
>emb|AL831799.3|CNS08CAC Oryza sativa chromosome 12, . BAC OSJNBa0087A02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 177034 Score = 127 bits (64), Expect = 5e-26 Identities = 94/104 (90%) Strand = Plus / Minus Query: 87 cagtttcgaggaggtgcaactatgcatggcccgaaaccacgaagccatgcattcaagttg 146 |||||||| || ||||||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 25667 cagtttcgtggtggtgcaactatgcatggacctaaaccacgaagccatgcaatcaagttg 25608 Query: 147 cagaagaaagtacgacgtctgggacttaagatagccttgtctgc 190 || ||||| || || ||||||||||| ||||||||||||||||| Sbjct: 25607 caaaagaaggtccgtcgtctgggactgaagatagccttgtctgc 25564 Score = 95.6 bits (48), Expect = 2e-16 Identities = 138/168 (82%) Strand = Plus / Minus Query: 217 tctttgaggacttagaagtccctagccacaagacgaaaaacatcgtgcagtacataaagc 276 ||||||||||||| ||||| ||||||||||||||||| ||| | ||| || |||| | Sbjct: 24875 tctttgaggacttggaagttcctagccacaagacgaagaacgttgtgagctatataagcc 24816 Query: 277 agatggatgatacgaagaagatattgttggtggatggaggtgacattgataagaagttaa 336 ||||||| || || ||||| | | |||| |||||||| || || ||||| ||| ||| Sbjct: 24815 agatggaggacacaaagaaagtgctactggttgatggaggcgatatcgataaaaagctaa 24756 Query: 337 agctggctactcaaaatcttcactacgtgaatgtcattccttcgattg 384 ||||||||||||||||||| |||||||||||||| ||||||| |||| Sbjct: 24755 agctggctactcaaaatctccactacgtgaatgtgcttccttcaattg 24708 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 29 aaagccttataaacaaaagggaactggaagagcacgtcatggaacattgcgtggt 83 ||||||||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 25834 aaagccttacaagcaaaaaggaactggaagagcacgtcatggaacattgcgtggt 25780 Score = 79.8 bits (40), Expect = 1e-11 Identities = 85/100 (85%) Strand = Plus / Minus Query: 387 ctcaatgtctacagcatcctgcagcatgacacccttgtaatgactcgggacgccatcaac 446 ||||| |||||||||||||| |||||||||||||| ||||||||||| || || | || Sbjct: 24567 ctcaacgtctacagcatcctccagcatgacaccctcgtaatgactcgcgatgctgtgaat 24508 Query: 447 agaatcgttgagcggatgcacacccccatcagccgctagc 486 | || |||||||| ||||| |||||||||| |||||||| Sbjct: 24507 cggattgttgagcgaatgcatacccccatcaaccgctagc 24468
>emb|AJ293490.1|SHY293490 Saccharum hybrid cultivar R570 microsatellite DNA, clone mSSCIR18 Length = 659 Score = 115 bits (58), Expect = 2e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 408 cagcatgacacccttgtaatgactcgggacgccatcaacagaatcgttgagcggatgcac 467 |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 657 cagcatgacacccttgtaatgactcgggctgctatcaacagaatcgtcgagcggatgcat 598 Query: 468 acccccatcagccgctagcaag 489 |||||||||| ||||||||||| Sbjct: 597 acccccatcaaccgctagcaag 576
>gb|BT012933.1| Lycopersicon esculentum clone 114096R, mRNA sequence Length = 1349 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 66 catggaacattgcgtggttgtcagtttcgaggaggtgcaactatgcatggcccgaaacca 125 ||||||||| |||||||| |||||||||||| ||||| ||||||||||| || ||||| Sbjct: 649 catggaacactgcgtggtcctcagtttcgaggtggtgccactatgcatggtccaaaaccg 708 Query: 126 cgaagccatgcattcaa 142 ||||| |||||| |||| Sbjct: 709 cgaagtcatgcaatcaa 725
>gb|AC080068.6| Homo sapiens BAC clone RP11-97L4 from 7, complete sequence Length = 62623 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Minus Query: 347 tcaaaatcttcactacgtgaatgt 370 |||||||||||||||||||||||| Sbjct: 6016 tcaaaatcttcactacgtgaatgt 5993
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 30 aagccttataaacaaaagggaactgg 55 ||||||| |||||||||||||||||| Sbjct: 279994 aagccttttaaacaaaagggaactgg 280019
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 580 agcaggccaaagtgcagcccaa 601 |||||||||||||||||||||| Sbjct: 71931 agcaggccaaagtgcagcccaa 71910
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 580 agcaggccaaagtgcagcccaa 601 |||||||||||||||||||||| Sbjct: 18279239 agcaggccaaagtgcagcccaa 18279260
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 580 agcaggccaaagtgcagcccaa 601 |||||||||||||||||||||| Sbjct: 18288492 agcaggccaaagtgcagcccaa 18288513
>gb|AC120856.6| Mus musculus chromosome 1, clone RP23-284B21, complete sequence Length = 261249 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 aagatattgttggtggatgga 314 ||||||||||||||||||||| Sbjct: 114096 aagatattgttggtggatgga 114076
>gb|AC154121.6| Mus musculus chromosome 1, clone RP24-93A17, complete sequence Length = 228353 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 aagatattgttggtggatgga 314 ||||||||||||||||||||| Sbjct: 51364 aagatattgttggtggatgga 51384
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tacataaagcagatggatga 286 |||||||||||||||||||| Sbjct: 3005447 tacataaagcagatggatga 3005428
>gb|AC160992.2| Mus musculus BAC clone RP23-147I23 from chromosome 9, complete sequence Length = 215980 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ccttataaacaaaagggaac 52 |||||||||||||||||||| Sbjct: 94900 ccttataaacaaaagggaac 94881
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 atacgaagaagatattgttg 305 |||||||||||||||||||| Sbjct: 1227830 atacgaagaagatattgttg 1227849
>ref|XM_744313.1| Aspergillus fumigatus Af293 60S ribosomal protein Rlp24 (Afu2g02710) partial mRNA Length = 567 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 attgttggtggatggaggtg 318 |||||||||||||||||||| Sbjct: 522 attgttggtggatggaggtg 541
>gb|AY208121.1| Sus scrofa myostatin gene, complete cds Length = 167404 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ttcaagttgcagaagaaagt 157 |||||||||||||||||||| Sbjct: 22430 ttcaagttgcagaagaaagt 22411
>emb|BX511184.11| Zebrafish DNA sequence from clone DKEY-103A3 in linkage group 24, complete sequence Length = 209735 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cttgtctgctagaacagctg 201 |||||||||||||||||||| Sbjct: 135323 cttgtctgctagaacagctg 135342
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gatgatacgaagaagatatt 301 |||||||||||||||||||| Sbjct: 1646342 gatgatacgaagaagatatt 1646323
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 546 ttttggtacaacagctctgatcac 569 |||||||||||||||||| ||||| Sbjct: 4366849 ttttggtacaacagctcttatcac 4366826
>gb|AC023399.4|AC023399 Homo sapiens chromosome 17, clone RP11-780O8, complete sequence Length = 175446 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 gaagaagatattgttggtgg 309 |||||||||||||||||||| Sbjct: 40359 gaagaagatattgttggtgg 40340
>gb|AC124283.11| Homo sapiens chromosome 17, clone RP13-638C3, complete sequence Length = 143744 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gataagaagttaaagctggc 343 |||||||||||||||||||| Sbjct: 41774 gataagaagttaaagctggc 41793
>gb|AC005177.1|AC005177 Homo sapiens chromosome 17, clone HCIT462L7, complete sequence Length = 142278 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 gaagaagatattgttggtgg 309 |||||||||||||||||||| Sbjct: 58515 gaagaagatattgttggtgg 58534
>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1279D09 Length = 134793 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 546 ttttggtacaacagctctgatcac 569 |||||||||||||||||| ||||| Sbjct: 69667 ttttggtacaacagctcttatcac 69644
>emb|CT025751.20| Mouse DNA sequence from clone RP24-365A12 on chromosome 9, complete sequence Length = 176584 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 gaacagctgaggggaagctctgca 216 |||||||||||| ||||||||||| Sbjct: 155653 gaacagctgaggtgaagctctgca 155676
>gb|AF091008.1|AF091008 Tick-borne encephalitis virus strain Crimea polyprotein gene, partial cds Length = 1488 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 aacagctgaggggaagctct 213 |||||||||||||||||||| Sbjct: 99 aacagctgaggggaagctct 118
>emb|CT030635.8| Mouse DNA sequence from clone RP23-94N7 on chromosome 9, complete sequence Length = 228508 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ccttataaacaaaagggaac 52 |||||||||||||||||||| Sbjct: 219980 ccttataaacaaaagggaac 219961 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,632,142 Number of Sequences: 3902068 Number of extensions: 4632142 Number of successful extensions: 75921 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75613 Number of HSP's gapped (non-prelim): 304 length of query: 614 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 591 effective length of database: 17,143,297,704 effective search space: 10131688943064 effective search space used: 10131688943064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)