>PF27_MOUSE (P52875) Transmembrane protein PFT27 (TPA-regulated locus protein)|
          Length = 323

 Score =  112 bits (279), Expect = 9e-25
 Identities = 67/167 (40%), Positives = 96/167 (57%), Gaps = 5/167 (2%)
 Frame = +3

Query: 60  SLAMIVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPNLISRKW 239
           ++++I++SE+GDKTFF AAI+AMR+ R  VLAG + AL +MT LS   G+ A  +I R +
Sbjct: 100 AISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATTVIPRVY 158

Query: 240 THHITTLLFFVFGIWSLWEGFKXX-----XXXXXXXXXXXKLDADFXXXXXXXXXXXXAT 404
           T++++T LF +FGI  L EG K                  K D +F              
Sbjct: 159 TYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETG 218

Query: 405 EDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADEN 545
             T   Q+ +L  F SPIF++A ++TF  EWGD+SQ+ TI LAA E+
Sbjct: 219 TSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAARED 264

>YD68_SCHPO (Q10320) Hypothetical UPF0016 protein C17G8.08c in chromosome I|
          Length = 287

 Score =  102 bits (254), Expect = 7e-22
 Identities = 66/185 (35%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
 Frame = +3

Query: 42  LGGLTKSLAMIVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPN 221
           L  L  S++MI   E+GDKTF  AA+LA  + R  V AG  SAL +MT L   LG  AP 
Sbjct: 47  LRSLIFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPL 106

Query: 222 LISRKWTHHITTLLFFVFGIWSLWEGFKXXXXXXXXXXXXXKLDADFXX----------- 368
           L  RK T  +  +LF +FGI  L E  +              +  +              
Sbjct: 107 LFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEG 166

Query: 369 ------XXXXXXXXXXATEDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGL 530
                                K K R  +   FSP+FIKAF++TF  EWGD+SQIATI +
Sbjct: 167 AAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAM 226

Query: 531 AADEN 545
           AA +N
Sbjct: 227 AASDN 231

>Y615_SYNY3 (P52876) Hypothetical UPF0016 protein sll0615|
          Length = 206

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 58/169 (34%), Positives = 84/169 (49%)
 Frame = +3

Query: 39  LLGGLTKSLAMIVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAP 218
           +L   T  L +I +SE+GDKTFF A ILAMR+PR+ VL G +  L  MT LS  +G +  
Sbjct: 1   MLTAFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFT 60

Query: 219 NLISRKWTHHITTLLFFVFGIWSLWEGFKXXXXXXXXXXXXXKLDADFXXXXXXXXXXXX 398
            L +R + ++    LF +FG   LW+  +             K  A+             
Sbjct: 61  FLPTR-YINYAEVALFLIFGTKLLWDARR------------IKATANLEEMEDAEKAIAS 107

Query: 399 ATEDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADEN 545
             +  K   R +       I +++F++TF  EWGD++QIATI LAA  N
Sbjct: 108 GEKKLKIVPRGW------GIVVESFALTFVAEWGDRTQIATIALAASNN 150



 Score = 38.1 bits (87), Expect = 0.016
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +3

Query: 45  GGLTKSLAMIVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPNL 224
           G + +S A+  ++E GD+T  A   LA  +    V AG +   T+   ++   G      
Sbjct: 120 GIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGR 179

Query: 225 ISRKWTHHITTLLFFVFGIWSLW 293
           IS K    I  LLF++F + S W
Sbjct: 180 ISEKTVTLIGGLLFYLFAVVSWW 202

>YB37_YEAST (P38301) Hypothetical UPF0016 protein YBR187w|
          Length = 280

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 15/177 (8%)
 Frame = +3

Query: 60  SLAMIVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPNLISRKW 239
           S++MI LSE+GDKTF  AA++AMRH R LV +   ++L +MT LS  +G  A   +S ++
Sbjct: 45  SVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERY 104

Query: 240 THHITTLLFFVFGIWSLWEGFKXXXXXXXXXXXXXKLD----ADFXXXXXXXXXXXXATE 407
           T     +LF VFG     EG +               +     D                
Sbjct: 105 TAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAY 164

Query: 408 DTKKKQ-----------RPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADEN 545
           D + K            R      FSP++++ F + F GE GD+SQI+ I +A D +
Sbjct: 165 DKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSD 221



 Score = 33.9 bits (76), Expect = 0.31
 Identities = 19/78 (24%), Positives = 39/78 (50%)
 Frame = +3

Query: 69  MIVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPNLISRKWTHH 248
           M+ L E+GD++  +   +A       V+AG +    + + L+   G +    IS +    
Sbjct: 199 MVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITL 258

Query: 249 ITTLLFFVFGIWSLWEGF 302
            ++LLFF+F +  +++ F
Sbjct: 259 ASSLLFFIFALMYIYQAF 276

>XYLE_ECOLI (P0AGF4) D-xylose-proton symporter (D-xylose transporter)|
          Length = 491

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +3

Query: 42  LGGLTKSLAMIVLSEVGDK--TFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVA 215
           LGGL       V+S   +   T F A           +L  C+++  +   +  +LG   
Sbjct: 19  LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYC 78

Query: 216 PNLISRKWTHHITTLLFFVFGIWSLW 293
            N   R+ +  I  +LFF+ G+ S W
Sbjct: 79  SNRFGRRDSLKIAAVLFFISGVGSAW 104

>XYLE_ECO57 (P0AGF5) D-xylose-proton symporter (D-xylose transporter)|
          Length = 491

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +3

Query: 42  LGGLTKSLAMIVLSEVGDK--TFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVA 215
           LGGL       V+S   +   T F A           +L  C+++  +   +  +LG   
Sbjct: 19  LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYC 78

Query: 216 PNLISRKWTHHITTLLFFVFGIWSLW 293
            N   R+ +  I  +LFF+ G+ S W
Sbjct: 79  SNRFGRRDSLKIAAVLFFISGVGSAW 104

>SUHW4_MOUSE (Q68FE8) Suppressor of hairy wing homolog 4|
          Length = 974

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 295 KASKKKESQKTWLNWKQSWMRTLRATKGNQKINQ--RQLRIQRKSKGHFSCSSSHQFLSR 468
           K++  K   K+ ++  Q    TL ++    K+N   R LR++R       CSS  +  + 
Sbjct: 591 KSNGSKSKNKSKVSNMQKKQSTLSSSNKKSKVNTALRNLRLRRGVHECIECSSEVKDFAN 650

Query: 469 HFPS 480
           HFP+
Sbjct: 651 HFPT 654

>RRF_SALPA (Q5PD60) Ribosome recycling factor (Ribosome-releasing factor)|
           (RRF)
          Length = 185

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 226 IRLGATQPREADKAVI----TVNADRQPARTSFRGWRMARIAAAKKVLSPTSESTIMASD 59
           +R G   P   D  V+    T+   RQ A  +    R  +I    + + P  E  IMASD
Sbjct: 27  VRTGRASPSLLDGIVVEYYGTLTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASD 86

Query: 58  LVSPPS 41
           L   PS
Sbjct: 87  LGLNPS 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,069,346
Number of Sequences: 219361
Number of extensions: 904900
Number of successful extensions: 3215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3212
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)